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Human Metabolome Database Version 2.5

 

Downloads

HMDB is offered to the public as a freely available resource. Use and re-distribution of the data, in whole or in part, for commercial purposes requires explicit permission of the authors and explicit acknowledgment of the source material (HMDB) and the original publication (see below). We ask that users who download significant portions of the database cite the HMDB paper in any resulting publications.



Protein/Gene Sequences (in FASTA Format)

Metabolizing Enzyme Sequences

Data Set Protein Sequences Gene Sequences
All Metabolite Metabolizing Enzymes Download Download

Structures (in SDF Format)

Metabolite Structures

Data Set SDF File
Metabolite Structures Download

Flat Files (in MetaboCard Format)

MetaboCard Flat Files

Data Set MetaboCard File
All Metabolites Download (zip file)

Spectra

Data Set MetaboCard File
Mass Spectra Image Files Download (zip file)
GC/MS Peak Lists Download (zip file)
NMR Spectra FIDS Files Download (zip file)
NMR Spectra Peaklist Files Download (zip file)
13C NMR and 1H NMR Spectra Files in HTML format Download (zip file)
Mass Spectra and NMR Spectra Files in HTML format Download (zip file)