Hmp_logo

Human Metabolome Database Version 3.5

HMDB has recently undergone some major changes, if you are experiencing problems please click here to provide us with feedback.

Downloads

Protein/Gene Sequences (in FASTA Format)

Data Set Protein Sequences Gene Sequences
All Metabolite Metabolizing Enzymes — —

Structures (in SDF Format)

Data Set SDF File
Metabolite Structures Download

Flat Files (in MetaboCard Format)

Data Set MetaboCard File
All Metabolites Download (gzip file)

Spectra

Data Set MetaboCard File
Mass Spectra Image Files Download (gzip file)
GC/MS Peak Lists Download (gzip file)
NMR Spectra FIDS Files Download (gzip file)
NMR Spectra Peaklist Files Download (gzip file)
13C NMR and 1H NMR Spectra Files in HTML format Download (gzip file)
Mass Spectra and NMR Spectra Files in HTML format Download (gzip file)

Protein/Gene Sequences (in FASTA Format)

Data Set Protein Sequences Gene Sequences
All Metabolite Metabolizing Enzymes Download Download

Structures (in SDF Format)

Data Set SDF File
Metabolite Structures Download

Flat Files (in MetaboCard Format)

Data Set MetaboCard File
All Metabolites Download (zip file)

Spectra

Data Set MetaboCard File
Mass Spectra Image Files Download (zip file)
GC/MS Peak Lists Download (zip file)
NMR Spectra FIDS Files Download (zip file)
NMR Spectra Peaklist Files Download (zip file)
13C NMR and 1H NMR Spectra Files in HTML format Download (zip file)
Mass Spectra and NMR Spectra Files in HTML format Download (zip file)

Protein/Gene Sequences (in FASTA Format)

Data Set Protein Sequences Gene Sequences
All Metabolite Metabolizing Enzymes Download Download

Structures (in SDF Format)

Data Set SDF File
Metabolite Structures Download

Metabolite and Protein Data (in XML format)

Data Set MetaboCard File
All Metabolites Download (zip file)
All Proteins Download (zip file)

Spectra

Data Set Download Link
Mass Spectra Image Files Download (zip file)
GC/MS Peak Lists Download (zip file)
NMR Spectra FIDS Files Download (zip file)
NMR Spectra Peaklist Files Download (zip file)
Spectra information (in XML format) Download (zip file)