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Record Information
Version5.0
StatusDetected and Quantified
Creation Date2006-10-25 08:58:52 UTC
Update Date2022-03-07 02:49:25 UTC
HMDB IDHMDB0005073
Secondary Accession Numbers
  • HMDB05073
Metabolite Identification
Common NameLeukotriene B5
DescriptionLeukotriene B5 (LTB5) is a 5-lipoxygenase metabolite of arachidonic (AA) and eicosapentaenoic acid (EPA), involved in numerous inflammatory diseases and possesses a substantially less potent inflammatory effect than LTB4. Binding of LTB5 to human neutrophil LTB4 high affinity binding sites is lower than that of LTB4. Polymorphonuclear leukocytes isolated from volunteers who ingested eicosapentaenoic acid (EPA) form LTB5. Enrichment of human neutrophils with EPA, by dietary supplementation for at least 3 weeks, reduces their formation of LTB4 ex vivo. LTB5 is catabolized to 20-OH-LTB5, which in turn is metabolized to 20-COOH-LTB5. Presumably the same enzyme systems are involved in the catabolism of LTB5 that are responsible for catabolism of LTB4. Fish oil supplementation has a protective effect on exercise-induced bronchoconstriction (EIB) in elite athletes, which may be attributed to its antiinflammatory properties due to a significant reduction in LTB4 and a significant increase in LTB5 generation from activated polymorphonuclear leukocytes (PMNLs). (PMID: 1964169 , 15866528 , 2538061 , 16424411 ). Leukotrienes are eicosanoids. The eicosanoids consist of the prostaglandins (PGs), thromboxanes (TXs), leukotrienes (LTs), and lipoxins (LXs). The PGs and TXs are collectively identified as prostanoids. Prostaglandins were originally shown to be synthesized in the prostate gland, thromboxanes from platelets (thrombocytes), and leukotrienes from leukocytes, hence the derivation of their names. All mammalian cells except erythrocytes synthesize eicosanoids. These molecules are extremely potent, able to cause profound physiological effects at very dilute concentrations. All eicosanoids function locally at the site of synthesis, through receptor-mediated G-protein linked signalling pathways.
Structure
Data?1582752343
Synonyms
ValueSource
(5S,6Z,8E,10E,12R,14Z)-5,12-Dihydroxy-6,8,10,14,17-eicosapentaenoic acidChEBI
5,12-DiHEPEChEBI
LTB5ChEBI
(5S,6Z,8E,10E,12R,14Z)-5,12-Dihydroxy-6,8,10,14,17-eicosapentaenoateGenerator
5,12-Dihydroxy-6-trans-leukotriene b(5)HMDB
5,12-Dihydroxy-6E-LTB5HMDB
5,12-Dihydroxy-6,8,10,14,17-eicosapentaenoic acidHMDB
LTB 5HMDB
Leukotriene b5MeSH
Chemical FormulaC20H30O4
Average Molecular Weight334.4498
Monoisotopic Molecular Weight334.214409448
IUPAC Name(5S,6Z,8E,10E,12R,14Z,17Z)-5,12-dihydroxyicosa-6,8,10,14,17-pentaenoic acid
Traditional Nameleukotriene B5
CAS Registry Number80445-66-5
SMILES
CC\C=C/C\C=C/C[C@@H](O)\C=C\C=C\C=C/[C@@H](O)CCCC(O)=O
InChI Identifier
InChI=1S/C20H30O4/c1-2-3-4-5-6-9-13-18(21)14-10-7-8-11-15-19(22)16-12-17-20(23)24/h3-4,6-11,14-15,18-19,21-22H,2,5,12-13,16-17H2,1H3,(H,23,24)/b4-3-,8-7+,9-6-,14-10+,15-11-/t18-,19-/m1/s1
InChI KeyBISQPGCQOHLHQK-HDNPQISLSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hydroxyeicosapentaenoic acids. These are eicosanoic acids with an attached hydroxyl group and five CC double bonds.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassEicosanoids
Direct ParentHydroxyeicosapentaenoic acids
Alternative Parents
Substituents
  • Hydroxyeicosapentaenoic acid
  • Long-chain fatty acid
  • Hydroxy fatty acid
  • Fatty acid
  • Unsaturated fatty acid
  • Secondary alcohol
  • Carboxylic acid derivative
  • Carboxylic acid
  • Monocarboxylic acid or derivatives
  • Organic oxide
  • Organic oxygen compound
  • Alcohol
  • Hydrocarbon derivative
  • Carbonyl group
  • Organooxygen compound
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogP2.895Not Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.016 g/LALOGPS
logP4.68ALOGPS
logP3.76ChemAxon
logS-4.3ALOGPS
pKa (Strongest Acidic)4.65ChemAxon
pKa (Strongest Basic)-1.3ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area77.76 ŲChemAxon
Rotatable Bond Count13ChemAxon
Refractivity104.1 m³·mol⁻¹ChemAxon
Polarizability38.28 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+186.64731661259
DarkChem[M-H]-183.87231661259
DeepCCS[M+H]+189.94430932474
DeepCCS[M-H]-187.58630932474
DeepCCS[M-2H]-221.86430932474
DeepCCS[M+Na]+197.09330932474
AllCCS[M+H]+189.632859911
AllCCS[M+H-H2O]+186.732859911
AllCCS[M+NH4]+192.332859911
AllCCS[M+Na]+193.032859911
AllCCS[M-H]-186.032859911
AllCCS[M+Na-2H]-187.832859911
AllCCS[M+HCOO]-189.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Leukotriene B5CC\C=C/C\C=C/C[C@@H](O)\C=C\C=C\C=C/[C@@H](O)CCCC(O)=O4749.1Standard polar33892256
Leukotriene B5CC\C=C/C\C=C/C[C@@H](O)\C=C\C=C\C=C/[C@@H](O)CCCC(O)=O2654.0Standard non polar33892256
Leukotriene B5CC\C=C/C\C=C/C[C@@H](O)\C=C\C=C\C=C/[C@@H](O)CCCC(O)=O2884.0Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Leukotriene B5,1TMS,isomer #1CC/C=C\C/C=C\C[C@H](/C=C/C=C/C=C\[C@@H](O)CCCC(=O)O)O[Si](C)(C)C3013.7Semi standard non polar33892256
Leukotriene B5,1TMS,isomer #2CC/C=C\C/C=C\C[C@@H](O)/C=C/C=C/C=C\[C@H](CCCC(=O)O)O[Si](C)(C)C3005.5Semi standard non polar33892256
Leukotriene B5,1TMS,isomer #3CC/C=C\C/C=C\C[C@@H](O)/C=C/C=C/C=C\[C@@H](O)CCCC(=O)O[Si](C)(C)C2897.3Semi standard non polar33892256
Leukotriene B5,2TMS,isomer #1CC/C=C\C/C=C\C[C@H](/C=C/C=C/C=C\[C@H](CCCC(=O)O)O[Si](C)(C)C)O[Si](C)(C)C3059.3Semi standard non polar33892256
Leukotriene B5,2TMS,isomer #2CC/C=C\C/C=C\C[C@H](/C=C/C=C/C=C\[C@@H](O)CCCC(=O)O[Si](C)(C)C)O[Si](C)(C)C2963.6Semi standard non polar33892256
Leukotriene B5,2TMS,isomer #3CC/C=C\C/C=C\C[C@@H](O)/C=C/C=C/C=C\[C@H](CCCC(=O)O[Si](C)(C)C)O[Si](C)(C)C2960.2Semi standard non polar33892256
Leukotriene B5,3TMS,isomer #1CC/C=C\C/C=C\C[C@H](/C=C/C=C/C=C\[C@H](CCCC(=O)O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C2994.0Semi standard non polar33892256
Leukotriene B5,1TBDMS,isomer #1CC/C=C\C/C=C\C[C@H](/C=C/C=C/C=C\[C@@H](O)CCCC(=O)O)O[Si](C)(C)C(C)(C)C3254.8Semi standard non polar33892256
Leukotriene B5,1TBDMS,isomer #2CC/C=C\C/C=C\C[C@@H](O)/C=C/C=C/C=C\[C@H](CCCC(=O)O)O[Si](C)(C)C(C)(C)C3251.5Semi standard non polar33892256
Leukotriene B5,1TBDMS,isomer #3CC/C=C\C/C=C\C[C@@H](O)/C=C/C=C/C=C\[C@@H](O)CCCC(=O)O[Si](C)(C)C(C)(C)C3140.2Semi standard non polar33892256
Leukotriene B5,2TBDMS,isomer #1CC/C=C\C/C=C\C[C@H](/C=C/C=C/C=C\[C@H](CCCC(=O)O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3508.7Semi standard non polar33892256
Leukotriene B5,2TBDMS,isomer #2CC/C=C\C/C=C\C[C@H](/C=C/C=C/C=C\[C@@H](O)CCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3438.0Semi standard non polar33892256
Leukotriene B5,2TBDMS,isomer #3CC/C=C\C/C=C\C[C@@H](O)/C=C/C=C/C=C\[C@H](CCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3434.3Semi standard non polar33892256
Leukotriene B5,3TBDMS,isomer #1CC/C=C\C/C=C\C[C@H](/C=C/C=C/C=C\[C@H](CCCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C3734.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Leukotriene B5 GC-MS (Non-derivatized) - 70eV, Positivesplash10-066r-5976000000-1308051082500b532d7b2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Leukotriene B5 GC-MS (3 TMS) - 70eV, Positivesplash10-002u-9114550000-fb98f8ad419bf0e2f1eb2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Leukotriene B5 GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - Leukotriene B5 LC-ESI-QIT , negative-QTOFsplash10-001i-0009000000-9449fd58f9fde96204812017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Leukotriene B5 LC-ESI-QIT , negative-QTOFsplash10-001i-0009000000-a9ad07c18d3c052b63ac2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Leukotriene B5 LC-ESI-QIT , negative-QTOFsplash10-001i-0209000000-a818cc05c0ef95e2ad4d2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Leukotriene B5 LC-ESI-QIT , negative-QTOFsplash10-001j-0829000000-0a8e49082c2592c2e26d2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Leukotriene B5 LC-ESI-QIT , negative-QTOFsplash10-0002-0912000000-00b3332ca1c15daab1052017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Leukotriene B5 LC-ESI-QIT , negative-QTOFsplash10-0gwb-0911000000-58f74003122760d3bd4d2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Leukotriene B5 LC-ESI-QIT , negative-QTOFsplash10-0ir0-0900000000-d4d5e65bf183ee1dd84a2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Leukotriene B5 LC-ESI-QIT , negative-QTOFsplash10-0dpi-2900000000-87002df340696b3389062017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Leukotriene B5 LC-ESI-QIT , negative-QTOFsplash10-0abc-9800000000-487240d905b7a6f046a42017-09-14HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 10V, Positive-QTOFsplash10-014j-0089000000-945a81862277ca8ffccd2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 20V, Positive-QTOFsplash10-00kk-3492000000-1307f5bf34685a04ff672017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 40V, Positive-QTOFsplash10-0a4u-9550000000-dd3a21bd0ec9a9c3281b2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 10V, Negative-QTOFsplash10-00lr-0029000000-aea24fc310a30c0083f42017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 20V, Negative-QTOFsplash10-0159-2359000000-2767c62677c595b5c6212017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 40V, Negative-QTOFsplash10-0a4l-9440000000-c5ad6a89519cdea928ca2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 10V, Negative-QTOFsplash10-001i-0009000000-1274a6f8c3d97ed0286e2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 20V, Negative-QTOFsplash10-00lr-2749000000-7d9e79b3bd2b6189e4d92021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 40V, Negative-QTOFsplash10-052u-5291000000-b78f6f5274e60d632da22021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 10V, Positive-QTOFsplash10-014k-0297000000-fc321826f71b083a009b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 20V, Positive-QTOFsplash10-0002-2592000000-7c86093f3b19ba95ffbe2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Leukotriene B5 40V, Positive-QTOFsplash10-05r0-9410000000-35baf3784e923e732e212021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified0.000079 +/- 0.000006 uMAdult (>18 years old)Both
Normal
details
BloodDetected and Quantified0.000079 +/- 0.0000056 uMAdult (>18 years old)Both
Normal
details
BloodDetected and Quantified<0.0001 uMAdult (>18 years old)Both
Normal
details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB023616
KNApSAcK IDNot Available
Chemspider ID4446249
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5283125
PDB IDNot Available
ChEBI ID88493
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. von Schacky C, Fahrer C, Fischer S: Catabolism of leukotriene B5 in humans. J Lipid Res. 1990 Oct;31(10):1831-8. [PubMed:1964169 ]
  2. Panchaud A, Avois L, Roulet M, Pilet M, Hug C, Saugy M, Decosterd LA: A validated liquid chromatography-mass spectrometry method for the determination of leukotrienes B4 and B5 produced by stimulated human polymorphonuclear leukocytes. Anal Biochem. 2005 Jun 1;341(1):58-68. [PubMed:15866528 ]
  3. Heidel JR, Taylor SM, Laegreid WW, Silflow RM, Liggitt HD, Leid RW: In vivo chemotaxis of bovine neutrophils induced by 5-lipoxygenase metabolites of arachidonic and eicosapentaenoic acid. Am J Pathol. 1989 Mar;134(3):671-6. [PubMed:2538061 ]
  4. Mickleborough TD, Lindley MR, Ionescu AA, Fly AD: Protective effect of fish oil supplementation on exercise-induced bronchoconstriction in asthma. Chest. 2006 Jan;129(1):39-49. [PubMed:16424411 ]
  5. Lipid Maps (LMFA03020010) [Link]