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Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:30:44 UTC
Update Date2022-03-07 02:52:11 UTC
HMDB IDHMDB0029493
Secondary Accession Numbers
  • HMDB29493
Metabolite Identification
Common NameFormononetin 7-(6''-malonylglucoside)
DescriptionFormononetin 7-(6''-malonylglucoside) belongs to the class of organic compounds known as isoflavonoid o-glycosides. These are o-glycosylated derivatives of isoflavonoids, which are natural products derived from 3-phenylchromen-4-one. Formononetin 7-(6''-malonylglucoside) has been detected, but not quantified in, several different foods, such as chickpeas (Cicer arietinum), black tea, herbs and spices, red tea, and teas (Camellia sinensis). This could make formononetin 7-(6''-malonylglucoside) a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Formononetin 7-(6''-malonylglucoside).
Structure
Data?1582753426
Synonyms
ValueSource
Formononetin 7-O-(6''-malonylglucoside)HMDB
Formononetin 7-O-glucoside-6''-malonateHMDB
3-oxo-3-[(3,4,5-Trihydroxy-6-{[3-(4-methoxyphenyl)-4-oxo-4H-chromen-7-yl]oxy}oxan-2-yl)methoxy]propanoateGenerator
Chemical FormulaC25H24O12
Average Molecular Weight516.4509
Monoisotopic Molecular Weight516.126776232
IUPAC Name3-oxo-3-[(3,4,5-trihydroxy-6-{[3-(4-methoxyphenyl)-4-oxo-4H-chromen-7-yl]oxy}oxan-2-yl)methoxy]propanoic acid
Traditional Name3-oxo-3-[(3,4,5-trihydroxy-6-{[3-(4-methoxyphenyl)-4-oxochromen-7-yl]oxy}oxan-2-yl)methoxy]propanoic acid
CAS Registry Number34232-16-1
SMILES
COC1=CC=C(C=C1)C1=COC2=CC(OC3OC(COC(=O)CC(O)=O)C(O)C(O)C3O)=CC=C2C1=O
InChI Identifier
InChI=1S/C25H24O12/c1-33-13-4-2-12(3-5-13)16-10-34-17-8-14(6-7-15(17)21(16)29)36-25-24(32)23(31)22(30)18(37-25)11-35-20(28)9-19(26)27/h2-8,10,18,22-25,30-32H,9,11H2,1H3,(H,26,27)
InChI KeyRDTAGQKYPGLCBK-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as isoflavonoid o-glycosides. These are o-glycosylated derivatives of isoflavonoids, which are natural products derived from 3-phenylchromen-4-one.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassIsoflavonoids
Sub ClassIsoflavonoid O-glycosides
Direct ParentIsoflavonoid O-glycosides
Alternative Parents
Substituents
  • Isoflavonoid o-glycoside
  • Isoflavonoid-7-o-glycoside
  • 4p-o-methylisoflavone
  • Isoflavone
  • Phenolic glycoside
  • Chromone
  • Glycosyl compound
  • O-glycosyl compound
  • Benzopyran
  • 1-benzopyran
  • Phenoxy compound
  • Anisole
  • Methoxybenzene
  • Phenol ether
  • Alkyl aryl ether
  • Pyranone
  • Monocyclic benzene moiety
  • Dicarboxylic acid or derivatives
  • Benzenoid
  • 1,3-dicarbonyl compound
  • Monosaccharide
  • Pyran
  • Oxane
  • Heteroaromatic compound
  • Carboxylic acid ester
  • Secondary alcohol
  • Polyol
  • Organoheterocyclic compound
  • Ether
  • Acetal
  • Oxacycle
  • Carboxylic acid
  • Carboxylic acid derivative
  • Alcohol
  • Organic oxide
  • Carbonyl group
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organic oxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.27 g/LALOGPS
logP0.97ALOGPS
logP0.94ChemAxon
logS-3.3ALOGPS
pKa (Strongest Acidic)3.38ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count11ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area178.28 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity121.82 m³·mol⁻¹ChemAxon
Polarizability50.39 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+218.57331661259
DarkChem[M-H]-215.53131661259
DeepCCS[M+H]+213.03730932474
DeepCCS[M-H]-210.67930932474
DeepCCS[M-2H]-243.56530932474
DeepCCS[M+Na]+219.64430932474
AllCCS[M+H]+216.532859911
AllCCS[M+H-H2O]+214.732859911
AllCCS[M+NH4]+218.132859911
AllCCS[M+Na]+218.532859911
AllCCS[M-H]-212.332859911
AllCCS[M+Na-2H]-213.632859911
AllCCS[M+HCOO]-215.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Formononetin 7-(6''-malonylglucoside)COC1=CC=C(C=C1)C1=COC2=CC(OC3OC(COC(=O)CC(O)=O)C(O)C(O)C3O)=CC=C2C1=O5771.4Standard polar33892256
Formononetin 7-(6''-malonylglucoside)COC1=CC=C(C=C1)C1=COC2=CC(OC3OC(COC(=O)CC(O)=O)C(O)C(O)C3O)=CC=C2C1=O4141.9Standard non polar33892256
Formononetin 7-(6''-malonylglucoside)COC1=CC=C(C=C1)C1=COC2=CC(OC3OC(COC(=O)CC(O)=O)C(O)C(O)C3O)=CC=C2C1=O4807.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Formononetin 7-(6''-malonylglucoside),1TMS,isomer #1COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C)C(O)C(O)C4O)=CC=C3C2=O)C=C14529.2Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),1TMS,isomer #2COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O[Si](C)(C)C)C(O)C4O)=CC=C3C2=O)C=C14584.3Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),1TMS,isomer #3COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O)C(O[Si](C)(C)C)C4O)=CC=C3C2=O)C=C14568.3Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),1TMS,isomer #4COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O)C(O)C4O[Si](C)(C)C)=CC=C3C2=O)C=C14589.4Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TMS,isomer #1COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C)C(O[Si](C)(C)C)C(O)C4O)=CC=C3C2=O)C=C14386.1Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TMS,isomer #2COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C)C(O)C(O[Si](C)(C)C)C4O)=CC=C3C2=O)C=C14380.6Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TMS,isomer #3COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C)C(O)C(O)C4O[Si](C)(C)C)=CC=C3C2=O)C=C14378.5Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TMS,isomer #4COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C4O)=CC=C3C2=O)C=C14453.4Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TMS,isomer #5COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O[Si](C)(C)C)C(O)C4O[Si](C)(C)C)=CC=C3C2=O)C=C14479.7Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TMS,isomer #6COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O)C(O[Si](C)(C)C)C4O[Si](C)(C)C)=CC=C3C2=O)C=C14449.4Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),3TMS,isomer #1COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C4O)=CC=C3C2=O)C=C14303.6Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),3TMS,isomer #2COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C)C(O[Si](C)(C)C)C(O)C4O[Si](C)(C)C)=CC=C3C2=O)C=C14325.8Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),3TMS,isomer #3COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C)C(O)C(O[Si](C)(C)C)C4O[Si](C)(C)C)=CC=C3C2=O)C=C14295.3Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),3TMS,isomer #4COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C4O[Si](C)(C)C)=CC=C3C2=O)C=C14412.2Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),4TMS,isomer #1COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C)C(O[Si](C)(C)C)C(O[Si](C)(C)C)C4O[Si](C)(C)C)=CC=C3C2=O)C=C14261.2Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),1TBDMS,isomer #1COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C(C)(C)C)C(O)C(O)C4O)=CC=C3C2=O)C=C14818.2Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),1TBDMS,isomer #2COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O[Si](C)(C)C(C)(C)C)C(O)C4O)=CC=C3C2=O)C=C14866.0Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),1TBDMS,isomer #3COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O)C(O[Si](C)(C)C(C)(C)C)C4O)=CC=C3C2=O)C=C14871.6Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),1TBDMS,isomer #4COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O)C(O)C4O[Si](C)(C)C(C)(C)C)=CC=C3C2=O)C=C14872.5Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TBDMS,isomer #1COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O)C4O)=CC=C3C2=O)C=C14948.2Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TBDMS,isomer #2COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C(C)(C)C)C(O)C(O[Si](C)(C)C(C)(C)C)C4O)=CC=C3C2=O)C=C14933.4Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TBDMS,isomer #3COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C(C)(C)C)C(O)C(O)C4O[Si](C)(C)C(C)(C)C)=CC=C3C2=O)C=C14938.9Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TBDMS,isomer #4COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C4O)=CC=C3C2=O)C=C15001.4Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TBDMS,isomer #5COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O[Si](C)(C)C(C)(C)C)C(O)C4O[Si](C)(C)C(C)(C)C)=CC=C3C2=O)C=C15013.6Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),2TBDMS,isomer #6COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O)C(O[Si](C)(C)C(C)(C)C)C4O[Si](C)(C)C(C)(C)C)=CC=C3C2=O)C=C14991.1Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),3TBDMS,isomer #1COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C4O)=CC=C3C2=O)C=C15059.1Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),3TBDMS,isomer #2COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C(O)C4O[Si](C)(C)C(C)(C)C)=CC=C3C2=O)C=C15093.8Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),3TBDMS,isomer #3COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O[Si](C)(C)C(C)(C)C)C(O)C(O[Si](C)(C)C(C)(C)C)C4O[Si](C)(C)C(C)(C)C)=CC=C3C2=O)C=C15057.9Semi standard non polar33892256
Formononetin 7-(6''-malonylglucoside),3TBDMS,isomer #4COC1=CC=C(C2=COC3=CC(OC4OC(COC(=O)CC(=O)O)C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)C4O[Si](C)(C)C(C)(C)C)=CC=C3C2=O)C=C15145.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Formononetin 7-(6''-malonylglucoside) GC-MS (Non-derivatized) - 70eV, Positivesplash10-000b-9333500000-c57efcd457e0b204f3b62017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Formononetin 7-(6''-malonylglucoside) GC-MS (2 TMS) - 70eV, Positivesplash10-0072-9525417000-928614684c91bda5acbd2017-10-06Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 6V, Positive-QTOFsplash10-014i-0290030000-d317486b73cac242c2902021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 6V, Positive-QTOFsplash10-014i-0090020000-87a0cb1abab493c85f9a2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 6V, Positive-QTOFsplash10-014i-0090000000-227e7fe04171a434997f2021-09-20HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 10V, Positive-QTOFsplash10-014i-2080920000-670dc6d8d89519b8ecf92016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 20V, Positive-QTOFsplash10-014i-1090100000-89a6cbc718c1002f8fbe2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 40V, Positive-QTOFsplash10-014i-2390000000-8b0c4b04a7399e2dfdba2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 10V, Negative-QTOFsplash10-0gc0-9761640000-d64b35fc32fad848d43e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 20V, Negative-QTOFsplash10-0gb9-7590300000-8ea4a05023f7e65f13802016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 40V, Negative-QTOFsplash10-0159-5490000000-943e37208cd1ae6490582016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 10V, Positive-QTOFsplash10-014i-0090120000-23f8d64381714d061d122021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 20V, Positive-QTOFsplash10-014i-0090000000-bfbf6980bd4079612de62021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 40V, Positive-QTOFsplash10-01b9-5595200000-a0fc5cb65e88053f93682021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 10V, Negative-QTOFsplash10-014i-0090300000-0521367064b2d588a1662021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 20V, Negative-QTOFsplash10-014i-3091700000-33b09f67dae1da5184032021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Formononetin 7-(6''-malonylglucoside) 40V, Negative-QTOFsplash10-014l-4190000000-ba8d7bba7588eaf7b1c52021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB000626
KNApSAcK IDC00010083
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound131750877
PDB IDNot Available
ChEBI ID176205
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .