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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:43:32 UTC
Update Date2022-03-07 02:52:59 UTC
HMDB IDHMDB0031471
Secondary Accession Numbers
  • HMDB31471
Metabolite Identification
Common NameDiplodiatoxin
DescriptionDiplodiatoxin belongs to the class of organic compounds known as gamma-keto acids and derivatives. These are organic compounds containing an aldehyde substituted with a keto group on the C4 carbon atom. Based on a literature review very few articles have been published on Diplodiatoxin.
Structure
Data?1563862130
Synonyms
ValueSource
1,2,4a,5,6,7,8,8a-Octahydro-1-(3-hydroxy-1-oxopropyl)-1,3,6,8-tetramethyl-2-naphthalenecarboxylic acid, 9ciHMDB
1-(3-Hydroxypropanoyl)-1,3,6,8-tetramethyl-1,2,4a,5,6,7,8,8a-octahydronaphthalene-2-carboxylateHMDB
DiplodiatoxinMeSH
Chemical FormulaC18H28O4
Average Molecular Weight308.4125
Monoisotopic Molecular Weight308.198759384
IUPAC Name1-(3-hydroxypropanoyl)-1,3,6,8-tetramethyl-1,2,4a,5,6,7,8,8a-octahydronaphthalene-2-carboxylic acid
Traditional Name1-(3-hydroxypropanoyl)-1,3,6,8-tetramethyl-4a,5,6,7,8,8a-hexahydro-2H-naphthalene-2-carboxylic acid
CAS Registry Number41060-01-9
SMILES
CC1CC(C)C2C(C1)C=C(C)C(C(O)=O)C2(C)C(=O)CCO
InChI Identifier
InChI=1S/C18H28O4/c1-10-7-11(2)15-13(8-10)9-12(3)16(17(21)22)18(15,4)14(20)5-6-19/h9-11,13,15-16,19H,5-8H2,1-4H3,(H,21,22)
InChI KeySFTQDPVLDKOILY-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as gamma-keto acids and derivatives. These are organic compounds containing an aldehyde substituted with a keto group on the C4 carbon atom.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassKeto acids and derivatives
Sub ClassGamma-keto acids and derivatives
Direct ParentGamma-keto acids and derivatives
Alternative Parents
Substituents
  • Gamma-keto acid
  • Beta-hydroxy ketone
  • Ketone
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary alcohol
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point187 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.13 g/LALOGPS
logP2.82ALOGPS
logP2.87ChemAxon
logS-3.4ALOGPS
pKa (Strongest Acidic)4.6ChemAxon
pKa (Strongest Basic)-2.4ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area74.6 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity85.53 m³·mol⁻¹ChemAxon
Polarizability34.41 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+171.7931661259
DarkChem[M-H]-168.87731661259
DeepCCS[M+H]+176.85430932474
DeepCCS[M-H]-174.49630932474
DeepCCS[M-2H]-208.02830932474
DeepCCS[M+Na]+183.25530932474
AllCCS[M+H]+173.332859911
AllCCS[M+H-H2O]+170.232859911
AllCCS[M+NH4]+176.232859911
AllCCS[M+Na]+177.032859911
AllCCS[M-H]-179.632859911
AllCCS[M+Na-2H]-180.132859911
AllCCS[M+HCOO]-180.932859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.5.81 minutes32390414
Predicted by Siyang on May 30, 202213.0396 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.25 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2301.5 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid256.3 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid173.1 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid165.8 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid133.9 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid543.0 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid535.4 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)70.7 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1042.7 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid471.6 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1339.1 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid339.0 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid411.9 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate219.6 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA188.1 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water36.5 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
DiplodiatoxinCC1CC(C)C2C(C1)C=C(C)C(C(O)=O)C2(C)C(=O)CCO3321.6Standard polar33892256
DiplodiatoxinCC1CC(C)C2C(C1)C=C(C)C(C(O)=O)C2(C)C(=O)CCO2251.6Standard non polar33892256
DiplodiatoxinCC1CC(C)C2C(C1)C=C(C)C(C(O)=O)C2(C)C(=O)CCO2267.1Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Diplodiatoxin,1TMS,isomer #1CC1=CC2CC(C)CC(C)C2C(C)(C(=O)CCO)C1C(=O)O[Si](C)(C)C2396.0Semi standard non polar33892256
Diplodiatoxin,1TMS,isomer #2CC1=CC2CC(C)CC(C)C2C(C)(C(=O)CCO[Si](C)(C)C)C1C(=O)O2453.1Semi standard non polar33892256
Diplodiatoxin,1TMS,isomer #3CC1=CC2CC(C)CC(C)C2C(C)(C(=CCO)O[Si](C)(C)C)C1C(=O)O2433.9Semi standard non polar33892256
Diplodiatoxin,2TMS,isomer #1CC1=CC2CC(C)CC(C)C2C(C)(C(=O)CCO[Si](C)(C)C)C1C(=O)O[Si](C)(C)C2394.4Semi standard non polar33892256
Diplodiatoxin,2TMS,isomer #2CC1=CC2CC(C)CC(C)C2C(C)(C(=CCO)O[Si](C)(C)C)C1C(=O)O[Si](C)(C)C2417.6Semi standard non polar33892256
Diplodiatoxin,2TMS,isomer #3CC1=CC2CC(C)CC(C)C2C(C)(C(=CCO[Si](C)(C)C)O[Si](C)(C)C)C1C(=O)O2448.1Semi standard non polar33892256
Diplodiatoxin,3TMS,isomer #1CC1=CC2CC(C)CC(C)C2C(C)(C(=CCO[Si](C)(C)C)O[Si](C)(C)C)C1C(=O)O[Si](C)(C)C2466.1Semi standard non polar33892256
Diplodiatoxin,3TMS,isomer #1CC1=CC2CC(C)CC(C)C2C(C)(C(=CCO[Si](C)(C)C)O[Si](C)(C)C)C1C(=O)O[Si](C)(C)C2452.2Standard non polar33892256
Diplodiatoxin,1TBDMS,isomer #1CC1=CC2CC(C)CC(C)C2C(C)(C(=O)CCO)C1C(=O)O[Si](C)(C)C(C)(C)C2655.3Semi standard non polar33892256
Diplodiatoxin,1TBDMS,isomer #2CC1=CC2CC(C)CC(C)C2C(C)(C(=O)CCO[Si](C)(C)C(C)(C)C)C1C(=O)O2709.1Semi standard non polar33892256
Diplodiatoxin,1TBDMS,isomer #3CC1=CC2CC(C)CC(C)C2C(C)(C(=CCO)O[Si](C)(C)C(C)(C)C)C1C(=O)O2679.3Semi standard non polar33892256
Diplodiatoxin,2TBDMS,isomer #1CC1=CC2CC(C)CC(C)C2C(C)(C(=O)CCO[Si](C)(C)C(C)(C)C)C1C(=O)O[Si](C)(C)C(C)(C)C2884.5Semi standard non polar33892256
Diplodiatoxin,2TBDMS,isomer #2CC1=CC2CC(C)CC(C)C2C(C)(C(=CCO)O[Si](C)(C)C(C)(C)C)C1C(=O)O[Si](C)(C)C(C)(C)C2871.7Semi standard non polar33892256
Diplodiatoxin,2TBDMS,isomer #3CC1=CC2CC(C)CC(C)C2C(C)(C(=CCO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C1C(=O)O2920.8Semi standard non polar33892256
Diplodiatoxin,3TBDMS,isomer #1CC1=CC2CC(C)CC(C)C2C(C)(C(=CCO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C1C(=O)O[Si](C)(C)C(C)(C)C3122.8Semi standard non polar33892256
Diplodiatoxin,3TBDMS,isomer #1CC1=CC2CC(C)CC(C)C2C(C)(C(=CCO[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)C1C(=O)O[Si](C)(C)C(C)(C)C3078.7Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Diplodiatoxin GC-MS (Non-derivatized) - 70eV, Positivesplash10-00di-7490000000-47e1af9ccd48809fc7172017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Diplodiatoxin GC-MS (2 TMS) - 70eV, Positivesplash10-000i-4627900000-ae378e374fc1a8df727a2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Diplodiatoxin GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 10V, Positive-QTOFsplash10-052f-0092000000-a242e107af3cb81ea9692016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 20V, Positive-QTOFsplash10-02fw-0090000000-c3cb5bd74dcc22e0443c2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 40V, Positive-QTOFsplash10-05n1-4890000000-79afafb57c5a4ffe962b2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 10V, Negative-QTOFsplash10-0a4i-0097000000-26824f8c6e3079565de12016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 20V, Negative-QTOFsplash10-06us-1091000000-45475d1acea3038b50e12016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 40V, Negative-QTOFsplash10-001m-4090000000-00195eb7627c09c25f982016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 10V, Negative-QTOFsplash10-0a4i-0069000000-5dae78425edfd33d873f2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 20V, Negative-QTOFsplash10-014i-0191000000-7d08fb6377b01f1b76612021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 40V, Negative-QTOFsplash10-014l-3290000000-1ab64a7d5bb79879e1192021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 10V, Positive-QTOFsplash10-0006-0191000000-24e26cad99222e1eff012021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 20V, Positive-QTOFsplash10-0a4i-1951000000-c1682a23815b1c0ffc802021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Diplodiatoxin 40V, Positive-QTOFsplash10-0aor-5940000000-5e03d79b67793597e5bf2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB008044
KNApSAcK IDC00057382
Chemspider ID35013371
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound12309246
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .