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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:44:48 UTC
Update Date2022-03-07 02:53:04 UTC
HMDB IDHMDB0031680
Secondary Accession Numbers
  • HMDB31680
Metabolite Identification
Common Name1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol
Description1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol belongs to the class of organic compounds known as glycosyldiacylglycerols. These are diacylglycerols that carry a saccharide moiety linked to the glycerol. Based on a literature review a small amount of articles have been published on 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol.
Structure
Data?1563862156
Synonyms
ValueSource
1-O-b-D-Glucopyranosyl-2,3-di-O-palmitoylglycerolGenerator
1-O-Β-D-glucopyranosyl-2,3-di-O-palmitoylglycerolGenerator
1-(Hexadecanoyloxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}propan-2-yl hexadecanoic acidGenerator
Chemical FormulaC41H78O10
Average Molecular Weight731.052
Monoisotopic Molecular Weight730.559498716
IUPAC Name1-(hexadecanoyloxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}propan-2-yl hexadecanoate
Traditional Name1-(hexadecanoyloxy)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}propan-2-yl hexadecanoate
CAS Registry NumberNot Available
SMILES
CCCCCCCCCCCCCCCC(=O)OCC(COC1OC(CO)C(O)C(O)C1O)OC(=O)CCCCCCCCCCCCCCC
InChI Identifier
InChI=1S/C41H78O10/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-36(43)48-32-34(33-49-41-40(47)39(46)38(45)35(31-42)51-41)50-37(44)30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h34-35,38-42,45-47H,3-33H2,1-2H3
InChI KeyDFUALJIUMYYHRG-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as glycosyldiacylglycerols. These are diacylglycerols that carry a saccharide moiety linked to the glycerol.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassGlycerolipids
Sub ClassGlycosylglycerols
Direct ParentGlycosyldiacylglycerols
Alternative Parents
Substituents
  • Glycosyldiacylglycerol
  • Fatty acyl glycoside
  • Fatty acyl glycoside of mono- or disaccharide
  • Hexose monosaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Fatty acid ester
  • Fatty acyl
  • Dicarboxylic acid or derivatives
  • Monosaccharide
  • Oxane
  • Carboxylic acid ester
  • Secondary alcohol
  • Polyol
  • Acetal
  • Organoheterocyclic compound
  • Oxacycle
  • Carboxylic acid derivative
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Primary alcohol
  • Carbonyl group
  • Alcohol
  • Organooxygen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00038 g/LALOGPS
logP8.29ALOGPS
logP10.23ChemAxon
logS-6.3ALOGPS
pKa (Strongest Acidic)12.21ChemAxon
pKa (Strongest Basic)-3ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area151.98 ŲChemAxon
Rotatable Bond Count37ChemAxon
Refractivity200.11 m³·mol⁻¹ChemAxon
Polarizability90.69 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+282.49931661259
DarkChem[M-H]-267.58631661259
DeepCCS[M+H]+278.55330932474
DeepCCS[M-H]-276.15830932474
DeepCCS[M-2H]-309.04130932474
DeepCCS[M+Na]+284.86530932474
AllCCS[M+H]+285.732859911
AllCCS[M+H-H2O]+285.732859911
AllCCS[M+NH4]+285.732859911
AllCCS[M+Na]+285.732859911
AllCCS[M-H]-271.932859911
AllCCS[M+Na-2H]-276.232859911
AllCCS[M+HCOO]-281.132859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. 10.27 minutes32390414
Predicted by Siyang on May 30, 202228.8613 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20222.3 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid79.8 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid5476.6 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid350.6 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid338.5 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid189.4 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid948.7 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid1373.1 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid1291.4 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)240.3 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid2941.3 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid1037.7 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid2981.5 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid1056.4 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid719.3 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate505.4 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA433.7 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water9.1 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerolCCCCCCCCCCCCCCCC(=O)OCC(COC1OC(CO)C(O)C(O)C1O)OC(=O)CCCCCCCCCCCCCCC3554.0Standard polar33892256
1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerolCCCCCCCCCCCCCCCC(=O)OCC(COC1OC(CO)C(O)C(O)C1O)OC(=O)CCCCCCCCCCCCCCC4651.5Standard non polar33892256
1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerolCCCCCCCCCCCCCCCC(=O)OCC(COC1OC(CO)C(O)C(O)C1O)OC(=O)CCCCCCCCCCCCCCC5212.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol,1TBDMS,isomer #4CCCCCCCCCCCCCCCC(=O)OCC(COC1OC(CO)C(O)C(O)C1O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCCCCCCCC5487.8Semi standard non polar33892256
1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol,1TBDMS,isomer #4CCCCCCCCCCCCCCCC(=O)OCC(COC1OC(CO)C(O)C(O)C1O[Si](C)(C)C(C)(C)C)OC(=O)CCCCCCCCCCCCCCC5105.1Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TMS_1_4) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TMS_2_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TMS_2_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TMS_2_4) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TMS_2_5) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TMS_2_6) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-10-18Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 10V, Positive-QTOFsplash10-03gr-0161910800-4d8e7278eb2c6e6b01f72016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 20V, Positive-QTOFsplash10-03g0-0497543100-324e7b7ce53348cae4ea2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 40V, Positive-QTOFsplash10-03dj-1974747100-00bcb28a452a0fe94f702016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 10V, Negative-QTOFsplash10-0a70-1291310300-ade3fcfde9ed0458f0fe2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 20V, Negative-QTOFsplash10-0bt9-1390100000-c4bff48d53bfa3551ff12016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 40V, Negative-QTOFsplash10-0a4i-5291000000-341eeaef35b9a242f4f92016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 10V, Positive-QTOFsplash10-01q9-8002310900-15dfe58d7c71527e54812021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 20V, Positive-QTOFsplash10-08gl-9022012200-d1d843a5590c22255d802021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 40V, Positive-QTOFsplash10-052f-9101000000-4243968404955577fbe42021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 10V, Negative-QTOFsplash10-056r-0590500800-1c5f13cb96b99c783e052021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 20V, Negative-QTOFsplash10-05r0-6391843500-231f29417fd56c80fdee2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 1-O-beta-D-Glucopyranosyl-2,3-di-O-palmitoylglycerol 40V, Negative-QTOFsplash10-0a4i-6194100000-cbdfca1a7720b49b9c8a2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB008340
KNApSAcK IDNot Available
Chemspider ID8638063
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound10462651
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. Ghosh S, Strum JC, Bell RM: Lipid biochemistry: functions of glycerolipids and sphingolipids in cellular signaling. FASEB J. 1997 Jan;11(1):45-50. [PubMed:9034165 ]
  6. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  7. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.