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Showing metabocard for cis-5-Octenoic acid (HMDB0032207)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:48:29 UTC
Update Date2023-02-21 17:21:44 UTC
HMDB IDHMDB0032207
Secondary Accession Numbers
  • HMDB32207
Metabolite Identification
Common Namecis-5-Octenoic acid
Descriptioncis-5-Octenoic acid, also known as cis-5-octenoate or (Z)-oct-5-enoic acid, belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms. Based on a literature review a significant number of articles have been published on cis-5-Octenoic acid.
Structure
Data?1677000104
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0032207 (cis-5-Octenoic acid)


  Mrv0541 05061306242D          

 10  9  0  0  0  0            999 V2000
   -1.6204    2.3645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  2  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  2  0  0  0  0
 10  8  1  0  0  0  0
M  END
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3D MOL for HMDB0032207 (cis-5-Octenoic acid)

HMDB0032207
     RDKit          3D
cis-5-Octenoic acid
 24 23  0  0  0  0  0  0  0  0999 V2000
   -3.4938    0.6352    0.5936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1534    0.9206   -0.0556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0268    0.7712    0.8499 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0618   -0.1132    0.6160 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0178   -1.0313   -0.5292 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2233   -0.8043   -1.3579 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5656   -0.9980   -0.7809 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9439   -0.1464    0.3589 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3013   -0.6364    1.4677 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9084    1.2244    0.2106 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5237   -0.3374    1.1057 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7114    1.4076    1.3606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2534    0.7506   -0.1985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2132    2.0416   -0.2887 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1243    0.4509   -1.0215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9510    1.3990    1.7621 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7308   -0.1438    1.3824 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0153   -2.0870   -0.0873 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8609   -0.9651   -1.1977 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2164    0.2272   -1.8156 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1855   -1.4675   -2.2892 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3677   -0.7825   -1.5633 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7776   -2.0810   -0.5318 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1201    1.7656    0.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
  1 11  1  0
  1 12  1  0
  1 13  1  0
  2 14  1  0
  2 15  1  0
  3 16  1  0
  4 17  1  0
  5 18  1  0
  5 19  1  0
  6 20  1  0
  6 21  1  0
  7 22  1  0
  7 23  1  0
 10 24  1  0
M  END
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3D SDF for HMDB0032207 (cis-5-Octenoic acid)


  Mrv0541 05061306242D          

 10  9  0  0  0  0            999 V2000
   -1.6204    2.3645    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059    1.9520    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9059    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1914    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5230    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2375    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9520    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664    0.7145    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3809    1.1270    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.6664   -0.1105    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  2  1  1  0  0  0  0
  3  2  1  0  0  0  0
  4  3  2  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  2  0  0  0  0
 10  8  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0032207

> <DATABASE_NAME>
hmdb

> <SMILES>
CC\C=C/CCCC(O)=O

> <INCHI_IDENTIFIER>
InChI=1S/C8H14O2/c1-2-3-4-5-6-7-8(9)10/h3-4H,2,5-7H2,1H3,(H,9,10)/b4-3-

> <INCHI_KEY>
RRGOKSYVAZDNKR-ARJAWSKDSA-N

> <FORMULA>
C8H14O2

> <MOLECULAR_WEIGHT>
142.1956

> <EXACT_MASS>
142.099379692

> <JCHEM_ACCEPTOR_COUNT>
2

> <JCHEM_AVERAGE_POLARIZABILITY>
16.32469436320992

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
1

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
(5Z)-oct-5-enoic acid

> <ALOGPS_LOGP>
2.46

> <JCHEM_LOGP>
2.3381118009999997

> <ALOGPS_LOGS>
-2.05

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
0

> <JCHEM_PHYSIOLOGICAL_CHARGE>
-1

> <JCHEM_PKA_STRONGEST_ACIDIC>
5.11235379484467

> <JCHEM_POLAR_SURFACE_AREA>
37.3

> <JCHEM_REFRACTIVITY>
41.3922

> <JCHEM_ROTATABLE_BOND_COUNT>
5

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
1.27e+00 g/l

> <JCHEM_TRADITIONAL_IUPAC>
cis-5-octenoic acid

> <JCHEM_VEBER_RULE>
1

$$$$
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3D-SDF for HMDB0032207 (cis-5-Octenoic acid)

HMDB0032207
     RDKit          3D
cis-5-Octenoic acid
 24 23  0  0  0  0  0  0  0  0999 V2000
   -3.4938    0.6352    0.5936 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1534    0.9206   -0.0556 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0268    0.7712    0.8499 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0618   -0.1132    0.6160 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0178   -1.0313   -0.5292 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2233   -0.8043   -1.3579 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5656   -0.9980   -0.7809 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9439   -0.1464    0.3589 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.3013   -0.6364    1.4677 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9084    1.2244    0.2106 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5237   -0.3374    1.1057 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7114    1.4076    1.3606 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2534    0.7506   -0.1985 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2132    2.0416   -0.2887 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1243    0.4509   -1.0215 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9510    1.3990    1.7621 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7308   -0.1438    1.3824 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0153   -2.0870   -0.0873 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8609   -0.9651   -1.1977 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2164    0.2272   -1.8156 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.1855   -1.4675   -2.2892 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3677   -0.7825   -1.5633 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.7776   -2.0810   -0.5318 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1201    1.7656    0.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  2  0
  8 10  1  0
  1 11  1  0
  1 12  1  0
  1 13  1  0
  2 14  1  0
  2 15  1  0
  3 16  1  0
  4 17  1  0
  5 18  1  0
  5 19  1  0
  6 20  1  0
  6 21  1  0
  7 22  1  0
  7 23  1  0
 10 24  1  0
M  END
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PDB for HMDB0032207 (cis-5-Octenoic acid)

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      -3.025   4.414   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -1.691   3.644   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0      -1.691   2.104   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      -0.357   1.334   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       0.976   2.104   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       2.310   1.334   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       3.644   2.104   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.977   1.334   0.000  0.00  0.00           C+0
HETATM    9  O   UNK     0       6.311   2.104   0.000  0.00  0.00           O+0
HETATM   10  O   UNK     0       4.977  -0.206   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9   10                                                  
CONECT    9    8                                                            
CONECT   10    8                                                            
MASTER        0    0    0    0    0    0    0    0   10    0   18    0
END
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3D PDB for HMDB0032207 (cis-5-Octenoic acid)

COMPND    HMDB0032207
HETATM    1  C1  UNL     1      -3.494   0.635   0.594  1.00  0.00           C  
HETATM    2  C2  UNL     1      -2.153   0.921  -0.056  1.00  0.00           C  
HETATM    3  C3  UNL     1      -1.027   0.771   0.850  1.00  0.00           C  
HETATM    4  C4  UNL     1      -0.062  -0.113   0.616  1.00  0.00           C  
HETATM    5  C5  UNL     1       0.018  -1.031  -0.529  1.00  0.00           C  
HETATM    6  C6  UNL     1       1.223  -0.804  -1.358  1.00  0.00           C  
HETATM    7  C7  UNL     1       2.566  -0.998  -0.781  1.00  0.00           C  
HETATM    8  C8  UNL     1       2.944  -0.146   0.359  1.00  0.00           C  
HETATM    9  O1  UNL     1       3.301  -0.636   1.468  1.00  0.00           O  
HETATM   10  O2  UNL     1       2.908   1.224   0.211  1.00  0.00           O  
HETATM   11  H1  UNL     1      -3.524  -0.337   1.106  1.00  0.00           H  
HETATM   12  H2  UNL     1      -3.711   1.408   1.361  1.00  0.00           H  
HETATM   13  H3  UNL     1      -4.253   0.751  -0.198  1.00  0.00           H  
HETATM   14  H4  UNL     1      -2.213   2.042  -0.289  1.00  0.00           H  
HETATM   15  H5  UNL     1      -2.124   0.451  -1.022  1.00  0.00           H  
HETATM   16  H6  UNL     1      -0.951   1.399   1.762  1.00  0.00           H  
HETATM   17  H7  UNL     1       0.731  -0.144   1.382  1.00  0.00           H  
HETATM   18  H8  UNL     1       0.015  -2.087  -0.087  1.00  0.00           H  
HETATM   19  H9  UNL     1      -0.861  -0.965  -1.198  1.00  0.00           H  
HETATM   20  H10 UNL     1       1.216   0.227  -1.816  1.00  0.00           H  
HETATM   21  H11 UNL     1       1.185  -1.468  -2.289  1.00  0.00           H  
HETATM   22  H12 UNL     1       3.368  -0.783  -1.563  1.00  0.00           H  
HETATM   23  H13 UNL     1       2.778  -2.081  -0.532  1.00  0.00           H  
HETATM   24  H14 UNL     1       2.120   1.766   0.471  1.00  0.00           H  
CONECT    1    2   11   12   13
CONECT    2    3   14   15
CONECT    3    4    4   16
CONECT    4    5   17
CONECT    5    6   18   19
CONECT    6    7   20   21
CONECT    7    8   22   23
CONECT    8    9    9   10
CONECT   10   24
END
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SMILES for HMDB0032207 (cis-5-Octenoic acid)

CC\C=C/CCCC(O)=O
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INCHI for HMDB0032207 (cis-5-Octenoic acid)

InChI=1S/C8H14O2/c1-2-3-4-5-6-7-8(9)10/h3-4H,2,5-7H2,1H3,(H,9,10)/b4-3-
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View in JSmolView Stereo Labels
Synonyms
ValueSource
(5Z)-Octenoic acidChEBI
(Z)-5-Octenoic acidChEBI
(Z)-Oct-5-enoic acidChEBI
5Z-Octenoic acidChEBI
FEMA 4350ChEBI
(5Z)-OctenoateGenerator
(Z)-5-OctenoateGenerator
(Z)-Oct-5-enoateGenerator
5Z-OctenoateGenerator
cis-5-OctenoateGenerator
(5Z)-5-Octenoic acidHMDB
5E-Octenoic acidHMDB
cis-delta-OctenoateHMDB
cis-Δ-octenoateHMDB
cis-Δ-octenoic acidHMDB
Hex-3-en-1-yl acetic acidGenerator
Chemical FormulaC8H14O2
Average Molecular Weight142.1956
Monoisotopic Molecular Weight142.099379692
IUPAC Name(5Z)-oct-5-enoic acid
Traditional Namecis-5-octenoic acid
CAS Registry Number41653-97-8
SMILES
CC\C=C/CCCC(O)=O
InChI Identifier
InChI=1S/C8H14O2/c1-2-3-4-5-6-7-8(9)10/h3-4H,2,5-7H2,1H3,(H,9,10)/b4-3-
InChI KeyRRGOKSYVAZDNKR-ARJAWSKDSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as medium-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 4 and 12 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentMedium-chain fatty acids
Alternative Parents
Substituents
  • Medium-chain fatty acid
  • Unsaturated fatty acid
  • Straight chain fatty acid
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Biological locationRoute of exposureSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling Point239.00 to 241.00 °C. @ 760.00 mm HgThe Good Scents Company Information System
Water Solubility0The Good Scents Company Information System
LogP2.274 (est)The Good Scents Company Information System
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility1.27 g/LALOGPS
logP2.46ALOGPS
logP2.34ChemAxon
logS-2ALOGPS
pKa (Strongest Acidic)5.11ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area37.3 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity41.39 m³·mol⁻¹ChemAxon
Polarizability16.32 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterNoChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+134.10431661259
DarkChem[M-H]-131.32331661259
DeepCCS[M+H]+132.83130932474
DeepCCS[M-H]-129.44230932474
DeepCCS[M-2H]-166.05230932474
DeepCCS[M+Na]+141.46130932474
AllCCS[M+H]+134.732859911
AllCCS[M+H-H2O]+130.632859911
AllCCS[M+NH4]+138.632859911
AllCCS[M+Na]+139.732859911
AllCCS[M-H]-135.832859911
AllCCS[M+Na-2H]-138.132859911
AllCCS[M+HCOO]-140.632859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.5.47 minutes32390414
Predicted by Siyang on May 30, 202212.9496 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20224.61 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid30.4 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid1872.0 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid364.9 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid138.3 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid258.1 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid264.8 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid517.9 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid454.9 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)85.0 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1112.2 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid405.3 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1145.7 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid387.2 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid352.4 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate398.2 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA350.5 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water26.6 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
cis-5-Octenoic acidCC\C=C/CCCC(O)=O2066.2Standard polar33892256
cis-5-Octenoic acidCC\C=C/CCCC(O)=O1128.6Standard non polar33892256
cis-5-Octenoic acidCC\C=C/CCCC(O)=O1202.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
cis-5-Octenoic acid,1TMS,isomer #1CC/C=C\CCCC(=O)O[Si](C)(C)C1250.7Semi standard non polar33892256
cis-5-Octenoic acid,1TBDMS,isomer #1CC/C=C\CCCC(=O)O[Si](C)(C)C(C)(C)C1481.7Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - cis-5-Octenoic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-014l-9000000000-06e67eca11f43385a03f2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-5-Octenoic acid GC-MS (1 TMS) - 70eV, Positivesplash10-01ds-9300000000-b63caee3906fbf202a982017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-5-Octenoic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 10V, Positive-QTOFsplash10-002f-2900000000-f7df3201de8edbc32f4f2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 20V, Positive-QTOFsplash10-0035-9300000000-bd147bb7d19218ac7f402016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 40V, Positive-QTOFsplash10-0006-9000000000-820e10dd41640454a2912016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 10V, Negative-QTOFsplash10-0006-1900000000-3b4bde2973834b69d33b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 20V, Negative-QTOFsplash10-0007-7900000000-63c14e5042fa47fc63802016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 40V, Negative-QTOFsplash10-0a4l-9000000000-c8e78af7421b856da4772016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 10V, Positive-QTOFsplash10-05r1-9100000000-f3634e45dadc9acae86e2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 20V, Positive-QTOFsplash10-0aor-9000000000-d6d77de9447c3431ae5d2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 40V, Positive-QTOFsplash10-0aou-9000000000-c6ee0847113fefb38f2f2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 10V, Negative-QTOFsplash10-00dl-0900000000-5b1ab8b211060e8bbc432021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 20V, Negative-QTOFsplash10-0abc-0900000000-59f8071ce0276dda1e802021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-5-Octenoic acid 40V, Negative-QTOFsplash10-0006-9000000000-5cf252a230b9c81c9fe02021-09-24Wishart LabView Spectrum

IR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+)2023-02-04FELIX labView Spectrum
Predicted IR SpectrumIR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+)2023-02-04FELIX labView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB006478
KNApSAcK IDNot Available
Chemspider ID4445845
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5282718
PDB IDNot Available
ChEBI ID176781
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1593971
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). EAFUS: Everything Added to Food in the United States.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.