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Showing metabocard for Ginsenoside Rb2 (HMDB0034996)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 19:56:03 UTC
Update Date2022-03-07 02:54:19 UTC
HMDB IDHMDB0034996
Secondary Accession Numbers
  • HMDB34996
Metabolite Identification
Common NameGinsenoside Rb2
DescriptionGinsenoside Rb2 belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. Ginsenoside Rb2 is an extremely weak basic (essentially neutral) compound (based on its pKa).
Structure
Data?1563862648
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0034996 (Ginsenoside Rb2)


  Mrv0541 02241218162D          

 75 82  0  0  0  0            999 V2000
    5.1352    2.1176    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8809    1.3340    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0738    1.1622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8195    0.3774    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6031    0.1231    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.1735   -2.1891    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7610   -1.4743    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5652   -1.6696    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0368   -1.0757    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5570   -0.4050    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6992   -0.6550    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0585   -0.2317    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3438   -0.6441    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3438   -1.4646    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0476   -1.8867    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.7584   -2.2977    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0585    0.5904    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.0476   -2.7087    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3259   -3.1253    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6029   -2.7075    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6235   -1.8813    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.6235   -1.0467    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.1977    3.0744    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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 73 74  1  0  0  0  0
M  END
Download

3D MOL for HMDB0034996 (Ginsenoside Rb2)

HMDB0034996
     RDKit          3D
Ginsenoside Rb2
165172  0  0  0  0  0  0  0  0999 V2000
    7.9910    0.5000    1.8187 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9732    0.7811    2.8395 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2880    1.7936    3.8871 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8252    0.1893    2.8517 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2925   -0.8402    1.9075 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9891   -0.4720    1.2800 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9625    0.6880    0.3648 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4761    1.9593    0.9994 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8731    0.4137   -0.6599 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7140   -0.6858   -1.4132 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7765   -1.6015   -1.4131 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9942   -0.9855   -1.6483 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0505   -2.0495   -1.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3102   -1.4993   -2.0070 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.3047   -2.4902   -2.0924 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7804   -2.4484   -3.3853 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.0839   -1.9781   -3.3913 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0046   -2.9926   -2.7263 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9119   -4.1634   -3.4762 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5543   -3.1773   -1.3159 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5784   -2.9398   -0.3950 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.3576   -2.3021   -1.0530 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8420   -2.7544    0.1897 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9462    0.0022   -2.7654 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1203   -0.1486   -3.5161 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -8.0716   -1.9377    0.1944 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7080   -1.8149   -1.0319 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8551   -2.6243   -1.0739 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6548   -2.4155   -2.1658 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7623   -1.4465   -1.7903 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3015   -0.2082   -1.3795 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8879   -1.7875   -3.3168 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5492   -2.1178   -4.4921 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4938   -2.3575   -3.4131 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5940   -3.7031   -3.7305 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7296   -2.1917   -2.1212 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1449   -3.4024   -1.7520 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7686    2.5868    1.1073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4710    3.7968    0.5829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0806    2.5669    2.6238 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3041    2.5656    0.9887 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5745    3.7743    1.5044 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1022    3.7435    1.1590 C   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.7118    1.6504    2.4204 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8751    1.1710    0.9270 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0139   -0.5832    1.5309 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0034996 (Ginsenoside Rb2)


  Mrv0541 02241218162D          

 75 82  0  0  0  0            999 V2000
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    6.5400    4.7501    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7565    5.0058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1434    4.4533    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.3153    3.6463    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.1225    2.7555    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  1 24  2  0  0  0  0
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  4 10  1  0  0  0  0
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  7 11  1  0  0  0  0
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  8  9  1  0  0  0  0
  9 10  1  0  0  0  0
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 15 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 20 53  1  0  0  0  0
 21 22  1  0  0  0  0
 21 26  1  0  0  0  0
 23 24  1  0  0  0  0
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 28 29  1  0  0  0  0
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 67 68  1  0  0  0  0
 68 69  1  0  0  0  0
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 69 70  1  0  0  0  0
 71 72  1  0  0  0  0
 72 73  1  0  0  0  0
 73 74  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0034996

> <DATABASE_NAME>
hmdb

> <SMILES>
CC(C)=CCCC(C)(OC1OC(COC2OCC(O)C(O)C2O)C(O)C(O)C1O)C1CCC2(C)C1C(O)CC1C3(C)CCC(OC4OC(CO)C(O)C(O)C4OC4OC(CO)C(O)C(O)C4O)C(C)(C)C3CCC21C

> <INCHI_IDENTIFIER>
InChI=1S/C53H90O22/c1-23(2)10-9-14-53(8,75-47-43(67)39(63)37(61)29(72-47)22-69-45-41(65)34(58)26(57)21-68-45)24-11-16-52(7)33(24)25(56)18-31-50(5)15-13-32(49(3,4)30(50)12-17-51(31,52)6)73-48-44(40(64)36(60)28(20-55)71-48)74-46-42(66)38(62)35(59)27(19-54)70-46/h10,24-48,54-67H,9,11-22H2,1-8H3

> <INCHI_KEY>
NODILNFGTFIURN-UHFFFAOYSA-N

> <FORMULA>
C53H90O22

> <MOLECULAR_WEIGHT>
1079.2685

> <EXACT_MASS>
1078.592374564

> <JCHEM_ACCEPTOR_COUNT>
22

> <JCHEM_AVERAGE_POLARIZABILITY>
115.38332444915177

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
14

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-{[2-(5-{[4,5-dihydroxy-6-(hydroxymethyl)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-16-hydroxy-2,6,6,10,11-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl)-6-methylhept-5-en-2-yl]oxy}-6-{[(3,4,5-trihydroxyoxan-2-yl)oxy]methyl}oxane-3,4,5-triol

> <ALOGPS_LOGP>
-0.02

> <JCHEM_LOGP>
-0.9210698356666672

> <ALOGPS_LOGS>
-3.14

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
8

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.186237607957729

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.752724815252483

> <JCHEM_PKA_STRONGEST_BASIC>
-3.6486743719488306

> <JCHEM_POLAR_SURFACE_AREA>
357.06

> <JCHEM_REFRACTIVITY>
260.92660000000006

> <JCHEM_ROTATABLE_BOND_COUNT>
15

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
7.84e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-{[2-(5-{[4,5-dihydroxy-6-(hydroxymethyl)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-16-hydroxy-2,6,6,10,11-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl)-6-methylhept-5-en-2-yl]oxy}-6-{[(3,4,5-trihydroxyoxan-2-yl)oxy]methyl}oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0034996 (Ginsenoside Rb2)

HMDB0034996
     RDKit          3D
Ginsenoside Rb2
165172  0  0  0  0  0  0  0  0999 V2000
    7.9910    0.5000    1.8187 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9732    0.7811    2.8395 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2880    1.7936    3.8871 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.8252    0.1893    2.8517 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.2925   -0.8402    1.9075 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9891   -0.4720    1.2800 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.9625    0.6880    0.3648 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4761    1.9593    0.9994 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8731    0.4137   -0.6599 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.7140   -0.6858   -1.4132 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7765   -1.6015   -1.4131 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9942   -0.9855   -1.6483 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0505   -2.0495   -1.7810 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.3102   -1.4993   -2.0070 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.3047   -2.4902   -2.0924 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.7804   -2.4484   -3.3853 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.0839   -1.9781   -3.3913 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.0046   -2.9926   -2.7263 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.9119   -4.1634   -3.4762 O   0  0  0  0  0  0  0  0  0  0  0  0
   12.5543   -3.1773   -1.3159 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.5784   -2.9398   -0.3950 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.3576   -2.3021   -1.0530 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.8420   -2.7544    0.1897 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.9462    0.0022   -2.7654 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.1203   -0.1486   -3.5161 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7627   -0.1919   -3.6679 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9684   -1.2628   -4.5519 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.5004   -0.3169   -2.8738 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6357   -1.2750   -3.4488 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.5963    0.9309   -0.2251 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.4510    2.1389   -1.0877 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4002    3.0300   -0.3876 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.9133    2.3207    0.8025 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5402    2.9713    2.0371 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.3963    0.8892    0.6294 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.4168   -0.0607    0.0570 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5991   -1.3169    0.7050 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0164    0.2018    0.0118 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2671    1.6653   -0.0612 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6958    2.0904   -0.2985 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7694    3.2132   -1.3402 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4711    0.9493   -0.9085 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9988    1.2387   -0.8859 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3218    1.3027    0.5910 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5680    0.9913    0.9939 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8265   -0.2638    1.4498 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9698   -0.1240    2.8773 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1942   -1.3572    3.4655 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9787   -1.1930    4.9802 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.2041   -2.4291    5.6085 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6386   -1.7282    3.1739 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.3580   -1.4110    4.3407 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1286   -0.8669    2.0610 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.3606   -1.2249    1.5559 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1222   -0.7651    0.9011 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0716   -1.9377    0.1944 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7080   -1.8149   -1.0319 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8551   -2.6243   -1.0739 O   0  0  0  0  0  0  0  0  0  0  0  0
  -10.6548   -2.4155   -2.1658 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.7623   -1.4465   -1.7903 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3015   -0.2082   -1.3795 O   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8879   -1.7875   -3.3168 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.5492   -2.1178   -4.4921 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4938   -2.3575   -3.4131 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5940   -3.7031   -3.7305 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7296   -2.1917   -2.1212 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1449   -3.4024   -1.7520 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7686    2.5868    1.1073 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4710    3.7968    0.5829 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0806    2.5669    2.6238 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3041    2.5656    0.9887 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.5745    3.7743    1.5044 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1022    3.7435    1.1590 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5736    2.3524    1.0895 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7118    1.6504    2.4204 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8751    1.1710    0.9270 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0139   -0.5832    1.5309 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.0353    0.7273    2.1837 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.3576    1.3632    4.9010 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3902    2.4841    3.9083 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1342    2.4395    3.6040 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.0642    0.4126    3.6501 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0751   -1.1981    1.2151 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.1020   -1.7363    2.5836 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3101   -0.3391    2.1748 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.5545   -1.3835    0.7892 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0034    2.8663    0.5664 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.5847    2.1020    0.7672 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.4090    2.0236    2.0728 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8372   -1.3490   -1.1614 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.2412   -0.4243   -0.7250 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.1085   -2.5965   -0.8106 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.8450   -2.7918   -2.5514 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8418   -3.4936   -1.9616 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.1649   -1.0331   -2.8184 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.4401   -1.7485   -4.4213 H   0  0  0  0  0  0  0  0  0  0  0  0
   14.0525   -2.6269   -2.7167 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.7609   -4.2885   -3.9516 H   0  0  0  0  0  0  0  0  0  0  0  0
   12.2635   -4.2348   -1.1910 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.5261   -3.5227    0.4107 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.6527   -1.2415   -0.8813 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.5330   -3.6836    0.0187 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9746    1.0343   -2.3403 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8225    0.4817   -3.1607 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.7016    0.7152   -4.3142 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.9585   -1.4523   -4.5473 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.9338    0.6263   -2.9199 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.8602   -2.1866   -3.1235 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.5175    0.0792   -0.9881 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9815    1.9290   -2.0982 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3633    2.6765   -1.3395 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.6628    3.4260   -1.1005 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.9862    3.9643   -0.1162 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.1388    2.2584    2.6324 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.8174    3.4051    2.7409 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.2192    3.8095    1.7800 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.5796    0.5492    1.6828 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.7640   -0.2995   -1.0013 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2357   -1.8375    0.6284 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4162   -0.2241   -0.9724 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.6393   -0.3457    0.7416 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7230    1.9869   -0.9803 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0469    4.1802   -0.9196 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7538    3.3136   -1.7781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4004    2.9255   -2.2190 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2195    0.9148   -1.9854 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3311   -0.0025   -0.3651 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4498    0.3401   -1.3137 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2607    2.1033   -1.4719 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6699    0.4482    0.9884 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0052   -0.9883    1.3723 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4805   -2.1413    3.1654 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.9383   -0.8533    5.1062 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6665   -0.4101    5.3631 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9052   -3.1692    5.0154 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7575   -2.7862    2.8994 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.1516   -1.9695    4.3769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2240    0.1991    2.4133 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.0485   -0.5084    1.6861 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6089    0.0147    0.2359 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.0829   -0.7786   -1.1265 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.1558   -3.3330   -2.5450 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.4811   -1.2875   -2.6274 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.3773   -1.8471   -0.9388 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6641    0.0912   -0.5123 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.8741   -0.6810   -3.2456 H   0  0  0  0  0  0  0  0  0  0  0  0
  -11.4825   -1.7989   -4.5094 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.9818   -1.8066   -4.2311 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.5053   -4.0289   -3.8869 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9546   -1.3885   -2.2200 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1111   -4.0032   -2.5522 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7657    3.7631   -0.4714 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4548    3.8593    1.1461 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9297    4.6919    0.8793 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.1679    2.5067    2.7846 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6321    3.4743    3.0824 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5871    1.6745    3.0446 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0390    1.7309    1.7247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.6363    3.7667    2.6273 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9517    4.7365    1.1799 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6242    4.4056    1.9139 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9772    4.2854    0.2080 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2853    1.4902    2.9395 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2300    2.3469    3.1327 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0971    0.6349    2.3989 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
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  2  4  2  3
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M  END
Download

PDB for HMDB0034996 (Ginsenoside Rb2)

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0       9.586   3.953   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       9.111   2.490   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       7.604   2.169   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.130   0.704   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       8.592   0.230   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       5.924  -4.086   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       5.154  -2.752   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       6.655  -3.117   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       7.535  -2.008   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       6.640  -0.756   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       5.039  -1.223   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       3.843  -0.433   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       2.508  -1.202   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       2.508  -2.734   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       3.822  -3.522   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       5.149  -4.289   0.000  0.00  0.00           C+0
HETATM   17  O   UNK     0       3.843   1.102   0.000  0.00  0.00           O+0
HETATM   18  C   UNK     0       3.822  -5.056   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       2.475  -5.834   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       1.125  -5.054   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       1.164  -3.512   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       1.164  -1.954   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      12.123   3.129   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0      11.092   4.274   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0      11.569   5.739   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -0.186  -2.732   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      -1.502  -3.491   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0      -1.502  -5.010   0.000  0.00  0.00           C+0
HETATM   29  O   UNK     0      -2.855  -5.790   0.000  0.00  0.00           O+0
HETATM   30  C   UNK     0      -4.210  -5.010   0.000  0.00  0.00           C+0
HETATM   31  O   UNK     0      -4.210  -3.448   0.000  0.00  0.00           O+0
HETATM   32  C   UNK     0      -5.521  -2.688   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -5.521  -1.125   0.000  0.00  0.00           C+0
HETATM   34  O   UNK     0      -6.834  -0.368   0.000  0.00  0.00           O+0
HETATM   35  O   UNK     0      -5.562 -10.340   0.000  0.00  0.00           O+0
HETATM   36  C   UNK     0      -6.875  -9.580   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0      -8.228 -10.363   0.000  0.00  0.00           C+0
HETATM   38  O   UNK     0      -8.228 -11.880   0.000  0.00  0.00           O+0
HETATM   39  O   UNK     0     -12.208  -8.018   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0     -10.894  -7.261   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0      -9.583  -8.018   0.000  0.00  0.00           C+0
HETATM   42  O   UNK     0      -8.228  -7.237   0.000  0.00  0.00           O+0
HETATM   43  C   UNK     0      -6.875  -8.066   0.000  0.00  0.00           C+0
HETATM   44  O   UNK     0      -5.521  -7.284   0.000  0.00  0.00           O+0
HETATM   45  C   UNK     0      -5.521  -5.767   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      -6.875  -4.987   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      -6.834  -3.448   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0      -8.189  -2.665   0.000  0.00  0.00           O+0
HETATM   49  C   UNK     0      -9.583  -9.580   0.000  0.00  0.00           C+0
HETATM   50  O   UNK     0     -10.894 -10.340   0.000  0.00  0.00           O+0
HETATM   51  O   UNK     0      -8.189  -5.744   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0      -1.202  -6.960   0.000  0.00  0.00           C+0
HETATM   53  C   UNK     0      -0.188  -5.813   0.000  0.00  0.00           C+0
HETATM   54  C   UNK     0       0.779  -6.979   0.000  0.00  0.00           C+0
HETATM   55  O   UNK     0       5.665   1.182   0.000  0.00  0.00           O+0
HETATM   56  C   UNK     0       5.344   2.685   0.000  0.00  0.00           C+0
HETATM   57  O   UNK     0       6.488   3.717   0.000  0.00  0.00           O+0
HETATM   58  C   UNK     0       6.168   5.223   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0       7.312   6.252   0.000  0.00  0.00           C+0
HETATM   60  O   UNK     0       6.991   7.758   0.000  0.00  0.00           O+0
HETATM   61  C   UNK     0       8.136   8.790   0.000  0.00  0.00           C+0
HETATM   62  O   UNK     0       7.818  10.296   0.000  0.00  0.00           O+0
HETATM   63  C   UNK     0       8.959  11.325   0.000  0.00  0.00           C+0
HETATM   64  C   UNK     0      10.425  10.851   0.000  0.00  0.00           C+0
HETATM   65  O   UNK     0      11.569  11.880   0.000  0.00  0.00           O+0
HETATM   66  O   UNK     0       2.737   2.131   0.000  0.00  0.00           O+0
HETATM   67  C   UNK     0       3.881   3.163   0.000  0.00  0.00           C+0
HETATM   68  C   UNK     0       3.560   4.669   0.000  0.00  0.00           C+0
HETATM   69  C   UNK     0       4.705   5.698   0.000  0.00  0.00           C+0
HETATM   70  O   UNK     0       4.384   7.204   0.000  0.00  0.00           O+0
HETATM   71  O   UNK     0      12.208   8.867   0.000  0.00  0.00           O+0
HETATM   72  C   UNK     0      10.745   9.344   0.000  0.00  0.00           C+0
HETATM   73  C   UNK     0       9.601   8.313   0.000  0.00  0.00           C+0
HETATM   74  O   UNK     0       9.922   6.806   0.000  0.00  0.00           O+0
HETATM   75  O   UNK     0       2.095   5.144   0.000  0.00  0.00           O+0
CONECT    1    2   24                                                       
CONECT    2    1    3                                                       
CONECT    3    2    4                                                       
CONECT    4    3    5   10   55                                             
CONECT    5    4                                                            
CONECT    6    7                                                            
CONECT    7    6    8   11   15                                             
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    4    9   11                                                  
CONECT   11    7   10   12                                                  
CONECT   12   11   13   17                                                  
CONECT   13   12   14                                                       
CONECT   14   13   15   21                                                  
CONECT   15    7   14   16   18                                             
CONECT   16   15                                                            
CONECT   17   12                                                            
CONECT   18   15   19                                                       
CONECT   19   18   20                                                       
CONECT   20   19   21   53                                                  
CONECT   21   14   20   22   26                                             
CONECT   22   21                                                            
CONECT   23   24                                                            
CONECT   24    1   23   25                                                  
CONECT   25   24                                                            
CONECT   26   21   27                                                       
CONECT   27   26   28                                                       
CONECT   28   27   29   53                                                  
CONECT   29   28   30                                                       
CONECT   30   29   31   45                                                  
CONECT   31   30   32                                                       
CONECT   32   31   33   47                                                  
CONECT   33   32   34                                                       
CONECT   34   33                                                            
CONECT   35   36                                                            
CONECT   36   35   37   43                                                  
CONECT   37   36   38   49                                                  
CONECT   38   37                                                            
CONECT   39   40                                                            
CONECT   40   39   41                                                       
CONECT   41   40   42   49                                                  
CONECT   42   41   43                                                       
CONECT   43   36   42   44                                                  
CONECT   44   43   45                                                       
CONECT   45   30   44   46                                                  
CONECT   46   45   47   51                                                  
CONECT   47   32   46   48                                                  
CONECT   48   47                                                            
CONECT   49   37   41   50                                                  
CONECT   50   49                                                            
CONECT   51   46                                                            
CONECT   52   53                                                            
CONECT   53   20   28   52   54                                             
CONECT   54   53                                                            
CONECT   55    4   56                                                       
CONECT   56   55   57   67                                                  
CONECT   57   56   58                                                       
CONECT   58   57   59   69                                                  
CONECT   59   58   60                                                       
CONECT   60   59   61                                                       
CONECT   61   60   62   73                                                  
CONECT   62   61   63                                                       
CONECT   63   62   64                                                       
CONECT   64   63   65   72                                                  
CONECT   65   64                                                            
CONECT   66   67                                                            
CONECT   67   56   66   68                                                  
CONECT   68   67   69   75                                                  
CONECT   69   58   68   70                                                  
CONECT   70   69                                                            
CONECT   71   72                                                            
CONECT   72   64   71   73                                                  
CONECT   73   61   72   74                                                  
CONECT   74   73                                                            
CONECT   75   68                                                            
MASTER        0    0    0    0    0    0    0    0   75    0  164    0
END
Download

3D PDB for HMDB0034996 (Ginsenoside Rb2)

COMPND    HMDB0034996
HETATM    1  C1  UNL     1       7.991   0.500   1.819  1.00  0.00           C  
HETATM    2  C2  UNL     1       6.973   0.781   2.839  1.00  0.00           C  
HETATM    3  C3  UNL     1       7.288   1.794   3.887  1.00  0.00           C  
HETATM    4  C4  UNL     1       5.825   0.189   2.852  1.00  0.00           C  
HETATM    5  C5  UNL     1       5.292  -0.840   1.907  1.00  0.00           C  
HETATM    6  C6  UNL     1       3.989  -0.472   1.280  1.00  0.00           C  
HETATM    7  C7  UNL     1       3.962   0.688   0.365  1.00  0.00           C  
HETATM    8  C8  UNL     1       4.476   1.959   0.999  1.00  0.00           C  
HETATM    9  O1  UNL     1       4.873   0.414  -0.660  1.00  0.00           O  
HETATM   10  C9  UNL     1       4.714  -0.686  -1.413  1.00  0.00           C  
HETATM   11  O2  UNL     1       5.777  -1.602  -1.413  1.00  0.00           O  
HETATM   12  C10 UNL     1       6.994  -0.986  -1.648  1.00  0.00           C  
HETATM   13  C11 UNL     1       8.050  -2.049  -1.781  1.00  0.00           C  
HETATM   14  O3  UNL     1       9.310  -1.499  -2.007  1.00  0.00           O  
HETATM   15  C12 UNL     1      10.305  -2.490  -2.092  1.00  0.00           C  
HETATM   16  O4  UNL     1      10.780  -2.448  -3.385  1.00  0.00           O  
HETATM   17  C13 UNL     1      12.084  -1.978  -3.391  1.00  0.00           C  
HETATM   18  C14 UNL     1      13.005  -2.993  -2.726  1.00  0.00           C  
HETATM   19  O5  UNL     1      12.912  -4.163  -3.476  1.00  0.00           O  
HETATM   20  C15 UNL     1      12.554  -3.177  -1.316  1.00  0.00           C  
HETATM   21  O6  UNL     1      13.578  -2.940  -0.395  1.00  0.00           O  
HETATM   22  C16 UNL     1      11.358  -2.302  -1.053  1.00  0.00           C  
HETATM   23  O7  UNL     1      10.842  -2.754   0.190  1.00  0.00           O  
HETATM   24  C17 UNL     1       6.946   0.002  -2.765  1.00  0.00           C  
HETATM   25  O8  UNL     1       8.120  -0.149  -3.516  1.00  0.00           O  
HETATM   26  C18 UNL     1       5.763  -0.192  -3.668  1.00  0.00           C  
HETATM   27  O9  UNL     1       5.968  -1.263  -4.552  1.00  0.00           O  
HETATM   28  C19 UNL     1       4.500  -0.317  -2.874  1.00  0.00           C  
HETATM   29  O10 UNL     1       3.636  -1.275  -3.449  1.00  0.00           O  
HETATM   30  C20 UNL     1       2.596   0.931  -0.225  1.00  0.00           C  
HETATM   31  C21 UNL     1       2.451   2.139  -1.088  1.00  0.00           C  
HETATM   32  C22 UNL     1       1.400   3.030  -0.388  1.00  0.00           C  
HETATM   33  C23 UNL     1       0.913   2.321   0.803  1.00  0.00           C  
HETATM   34  C24 UNL     1       1.540   2.971   2.037  1.00  0.00           C  
HETATM   35  C25 UNL     1       1.396   0.889   0.629  1.00  0.00           C  
HETATM   36  C26 UNL     1       0.417  -0.061   0.057  1.00  0.00           C  
HETATM   37  O11 UNL     1       0.599  -1.317   0.705  1.00  0.00           O  
HETATM   38  C27 UNL     1      -1.016   0.202   0.012  1.00  0.00           C  
HETATM   39  C28 UNL     1      -1.267   1.665  -0.061  1.00  0.00           C  
HETATM   40  C29 UNL     1      -2.696   2.090  -0.298  1.00  0.00           C  
HETATM   41  C30 UNL     1      -2.769   3.213  -1.340  1.00  0.00           C  
HETATM   42  C31 UNL     1      -3.471   0.949  -0.909  1.00  0.00           C  
HETATM   43  C32 UNL     1      -4.999   1.239  -0.886  1.00  0.00           C  
HETATM   44  C33 UNL     1      -5.322   1.303   0.591  1.00  0.00           C  
HETATM   45  O12 UNL     1      -6.568   0.991   0.994  1.00  0.00           O  
HETATM   46  C34 UNL     1      -6.827  -0.264   1.450  1.00  0.00           C  
HETATM   47  O13 UNL     1      -6.970  -0.124   2.877  1.00  0.00           O  
HETATM   48  C35 UNL     1      -7.194  -1.357   3.465  1.00  0.00           C  
HETATM   49  C36 UNL     1      -6.979  -1.193   4.980  1.00  0.00           C  
HETATM   50  O14 UNL     1      -7.204  -2.429   5.608  1.00  0.00           O  
HETATM   51  C37 UNL     1      -8.639  -1.728   3.174  1.00  0.00           C  
HETATM   52  O15 UNL     1      -9.358  -1.411   4.341  1.00  0.00           O  
HETATM   53  C38 UNL     1      -9.129  -0.867   2.061  1.00  0.00           C  
HETATM   54  O16 UNL     1     -10.361  -1.225   1.556  1.00  0.00           O  
HETATM   55  C39 UNL     1      -8.122  -0.765   0.901  1.00  0.00           C  
HETATM   56  O17 UNL     1      -8.072  -1.938   0.194  1.00  0.00           O  
HETATM   57  C40 UNL     1      -8.708  -1.815  -1.032  1.00  0.00           C  
HETATM   58  O18 UNL     1      -9.855  -2.624  -1.074  1.00  0.00           O  
HETATM   59  C41 UNL     1     -10.655  -2.415  -2.166  1.00  0.00           C  
HETATM   60  C42 UNL     1     -11.762  -1.446  -1.790  1.00  0.00           C  
HETATM   61  O19 UNL     1     -11.302  -0.208  -1.379  1.00  0.00           O  
HETATM   62  C43 UNL     1      -9.888  -1.788  -3.317  1.00  0.00           C  
HETATM   63  O20 UNL     1     -10.549  -2.118  -4.492  1.00  0.00           O  
HETATM   64  C44 UNL     1      -8.494  -2.358  -3.413  1.00  0.00           C  
HETATM   65  O21 UNL     1      -8.594  -3.703  -3.730  1.00  0.00           O  
HETATM   66  C45 UNL     1      -7.730  -2.192  -2.121  1.00  0.00           C  
HETATM   67  O22 UNL     1      -7.145  -3.402  -1.752  1.00  0.00           O  
HETATM   68  C46 UNL     1      -4.769   2.587   1.107  1.00  0.00           C  
HETATM   69  C47 UNL     1      -5.471   3.797   0.583  1.00  0.00           C  
HETATM   70  C48 UNL     1      -5.081   2.567   2.624  1.00  0.00           C  
HETATM   71  C49 UNL     1      -3.304   2.566   0.989  1.00  0.00           C  
HETATM   72  C50 UNL     1      -2.575   3.774   1.504  1.00  0.00           C  
HETATM   73  C51 UNL     1      -1.102   3.744   1.159  1.00  0.00           C  
HETATM   74  C52 UNL     1      -0.574   2.352   1.089  1.00  0.00           C  
HETATM   75  C53 UNL     1      -0.712   1.650   2.420  1.00  0.00           C  
HETATM   76  H1  UNL     1       7.875   1.171   0.927  1.00  0.00           H  
HETATM   77  H2  UNL     1       8.014  -0.583   1.531  1.00  0.00           H  
HETATM   78  H3  UNL     1       9.035   0.727   2.184  1.00  0.00           H  
HETATM   79  H4  UNL     1       7.358   1.363   4.901  1.00  0.00           H  
HETATM   80  H5  UNL     1       6.390   2.484   3.908  1.00  0.00           H  
HETATM   81  H6  UNL     1       8.134   2.440   3.604  1.00  0.00           H  
HETATM   82  H7  UNL     1       5.064   0.413   3.650  1.00  0.00           H  
HETATM   83  H8  UNL     1       6.075  -1.198   1.215  1.00  0.00           H  
HETATM   84  H9  UNL     1       5.102  -1.736   2.584  1.00  0.00           H  
HETATM   85  H10 UNL     1       3.310  -0.339   2.175  1.00  0.00           H  
HETATM   86  H11 UNL     1       3.555  -1.383   0.789  1.00  0.00           H  
HETATM   87  H12 UNL     1       4.003   2.866   0.566  1.00  0.00           H  
HETATM   88  H13 UNL     1       5.585   2.102   0.767  1.00  0.00           H  
HETATM   89  H14 UNL     1       4.409   2.024   2.073  1.00  0.00           H  
HETATM   90  H15 UNL     1       3.837  -1.349  -1.161  1.00  0.00           H  
HETATM   91  H16 UNL     1       7.241  -0.424  -0.725  1.00  0.00           H  
HETATM   92  H17 UNL     1       8.109  -2.597  -0.811  1.00  0.00           H  
HETATM   93  H18 UNL     1       7.845  -2.792  -2.551  1.00  0.00           H  
HETATM   94  H19 UNL     1       9.842  -3.494  -1.962  1.00  0.00           H  
HETATM   95  H20 UNL     1      12.165  -1.033  -2.818  1.00  0.00           H  
HETATM   96  H21 UNL     1      12.440  -1.749  -4.421  1.00  0.00           H  
HETATM   97  H22 UNL     1      14.053  -2.627  -2.717  1.00  0.00           H  
HETATM   98  H23 UNL     1      13.761  -4.288  -3.952  1.00  0.00           H  
HETATM   99  H24 UNL     1      12.264  -4.235  -1.191  1.00  0.00           H  
HETATM  100  H25 UNL     1      13.526  -3.523   0.411  1.00  0.00           H  
HETATM  101  H26 UNL     1      11.653  -1.242  -0.881  1.00  0.00           H  
HETATM  102  H27 UNL     1      10.533  -3.684   0.019  1.00  0.00           H  
HETATM  103  H28 UNL     1       6.975   1.034  -2.340  1.00  0.00           H  
HETATM  104  H29 UNL     1       8.822   0.482  -3.161  1.00  0.00           H  
HETATM  105  H30 UNL     1       5.702   0.715  -4.314  1.00  0.00           H  
HETATM  106  H31 UNL     1       6.959  -1.452  -4.547  1.00  0.00           H  
HETATM  107  H32 UNL     1       3.934   0.626  -2.920  1.00  0.00           H  
HETATM  108  H33 UNL     1       3.860  -2.187  -3.123  1.00  0.00           H  
HETATM  109  H34 UNL     1       2.518   0.079  -0.988  1.00  0.00           H  
HETATM  110  H35 UNL     1       1.981   1.929  -2.098  1.00  0.00           H  
HETATM  111  H36 UNL     1       3.363   2.677  -1.339  1.00  0.00           H  
HETATM  112  H37 UNL     1       0.663   3.426  -1.101  1.00  0.00           H  
HETATM  113  H38 UNL     1       1.986   3.964  -0.116  1.00  0.00           H  
HETATM  114  H39 UNL     1       2.139   2.258   2.632  1.00  0.00           H  
HETATM  115  H40 UNL     1       0.817   3.405   2.741  1.00  0.00           H  
HETATM  116  H41 UNL     1       2.219   3.809   1.780  1.00  0.00           H  
HETATM  117  H42 UNL     1       1.580   0.549   1.683  1.00  0.00           H  
HETATM  118  H43 UNL     1       0.764  -0.299  -1.001  1.00  0.00           H  
HETATM  119  H44 UNL     1      -0.236  -1.838   0.628  1.00  0.00           H  
HETATM  120  H45 UNL     1      -1.416  -0.224  -0.972  1.00  0.00           H  
HETATM  121  H46 UNL     1      -1.639  -0.346   0.742  1.00  0.00           H  
HETATM  122  H47 UNL     1      -0.723   1.987  -0.980  1.00  0.00           H  
HETATM  123  H48 UNL     1      -3.047   4.180  -0.920  1.00  0.00           H  
HETATM  124  H49 UNL     1      -1.754   3.314  -1.778  1.00  0.00           H  
HETATM  125  H50 UNL     1      -3.400   2.925  -2.219  1.00  0.00           H  
HETATM  126  H51 UNL     1      -3.219   0.915  -1.985  1.00  0.00           H  
HETATM  127  H52 UNL     1      -3.331  -0.003  -0.365  1.00  0.00           H  
HETATM  128  H53 UNL     1      -5.450   0.340  -1.314  1.00  0.00           H  
HETATM  129  H54 UNL     1      -5.261   2.103  -1.472  1.00  0.00           H  
HETATM  130  H55 UNL     1      -4.670   0.448   0.988  1.00  0.00           H  
HETATM  131  H56 UNL     1      -6.005  -0.988   1.372  1.00  0.00           H  
HETATM  132  H57 UNL     1      -6.480  -2.141   3.165  1.00  0.00           H  
HETATM  133  H58 UNL     1      -5.938  -0.853   5.106  1.00  0.00           H  
HETATM  134  H59 UNL     1      -7.667  -0.410   5.363  1.00  0.00           H  
HETATM  135  H60 UNL     1      -6.905  -3.169   5.015  1.00  0.00           H  
HETATM  136  H61 UNL     1      -8.758  -2.786   2.899  1.00  0.00           H  
HETATM  137  H62 UNL     1     -10.152  -1.970   4.377  1.00  0.00           H  
HETATM  138  H63 UNL     1      -9.224   0.199   2.413  1.00  0.00           H  
HETATM  139  H64 UNL     1     -11.048  -0.508   1.686  1.00  0.00           H  
HETATM  140  H65 UNL     1      -8.609   0.015   0.236  1.00  0.00           H  
HETATM  141  H66 UNL     1      -9.083  -0.779  -1.126  1.00  0.00           H  
HETATM  142  H67 UNL     1     -11.156  -3.333  -2.545  1.00  0.00           H  
HETATM  143  H68 UNL     1     -12.481  -1.287  -2.627  1.00  0.00           H  
HETATM  144  H69 UNL     1     -12.377  -1.847  -0.939  1.00  0.00           H  
HETATM  145  H70 UNL     1     -11.664   0.091  -0.512  1.00  0.00           H  
HETATM  146  H71 UNL     1      -9.874  -0.681  -3.246  1.00  0.00           H  
HETATM  147  H72 UNL     1     -11.482  -1.799  -4.509  1.00  0.00           H  
HETATM  148  H73 UNL     1      -7.982  -1.807  -4.231  1.00  0.00           H  
HETATM  149  H74 UNL     1      -9.505  -4.029  -3.887  1.00  0.00           H  
HETATM  150  H75 UNL     1      -6.955  -1.388  -2.220  1.00  0.00           H  
HETATM  151  H76 UNL     1      -7.111  -4.003  -2.552  1.00  0.00           H  
HETATM  152  H77 UNL     1      -5.766   3.763  -0.471  1.00  0.00           H  
HETATM  153  H78 UNL     1      -6.455   3.859   1.146  1.00  0.00           H  
HETATM  154  H79 UNL     1      -4.930   4.692   0.879  1.00  0.00           H  
HETATM  155  H80 UNL     1      -6.168   2.507   2.785  1.00  0.00           H  
HETATM  156  H81 UNL     1      -4.632   3.474   3.082  1.00  0.00           H  
HETATM  157  H82 UNL     1      -4.587   1.674   3.045  1.00  0.00           H  
HETATM  158  H83 UNL     1      -3.039   1.731   1.725  1.00  0.00           H  
HETATM  159  H84 UNL     1      -2.636   3.767   2.627  1.00  0.00           H  
HETATM  160  H85 UNL     1      -2.952   4.736   1.180  1.00  0.00           H  
HETATM  161  H86 UNL     1      -0.624   4.406   1.914  1.00  0.00           H  
HETATM  162  H87 UNL     1      -0.977   4.285   0.208  1.00  0.00           H  
HETATM  163  H88 UNL     1       0.285   1.490   2.939  1.00  0.00           H  
HETATM  164  H89 UNL     1      -1.230   2.347   3.133  1.00  0.00           H  
HETATM  165  H90 UNL     1      -1.097   0.635   2.399  1.00  0.00           H  
CONECT    1    2   76   77   78
CONECT    2    3    4    4
CONECT    3   79   80   81
CONECT    4    5   82
CONECT    5    6   83   84
CONECT    6    7   85   86
CONECT    7    8    9   30
CONECT    8   87   88   89
CONECT    9   10
CONECT   10   11   28   90
CONECT   11   12
CONECT   12   13   24   91
CONECT   13   14   92   93
CONECT   14   15
CONECT   15   16   22   94
CONECT   16   17
CONECT   17   18   95   96
CONECT   18   19   20   97
CONECT   19   98
CONECT   20   21   22   99
CONECT   21  100
CONECT   22   23  101
CONECT   23  102
CONECT   24   25   26  103
CONECT   25  104
CONECT   26   27   28  105
CONECT   27  106
CONECT   28   29  107
CONECT   29  108
CONECT   30   31   35  109
CONECT   31   32  110  111
CONECT   32   33  112  113
CONECT   33   34   35   74
CONECT   34  114  115  116
CONECT   35   36  117
CONECT   36   37   38  118
CONECT   37  119
CONECT   38   39  120  121
CONECT   39   40   74  122
CONECT   40   41   42   71
CONECT   41  123  124  125
CONECT   42   43  126  127
CONECT   43   44  128  129
CONECT   44   45   68  130
CONECT   45   46
CONECT   46   47   55  131
CONECT   47   48
CONECT   48   49   51  132
CONECT   49   50  133  134
CONECT   50  135
CONECT   51   52   53  136
CONECT   52  137
CONECT   53   54   55  138
CONECT   54  139
CONECT   55   56  140
CONECT   56   57
CONECT   57   58   66  141
CONECT   58   59
CONECT   59   60   62  142
CONECT   60   61  143  144
CONECT   61  145
CONECT   62   63   64  146
CONECT   63  147
CONECT   64   65   66  148
CONECT   65  149
CONECT   66   67  150
CONECT   67  151
CONECT   68   69   70   71
CONECT   69  152  153  154
CONECT   70  155  156  157
CONECT   71   72  158
CONECT   72   73  159  160
CONECT   73   74  161  162
CONECT   74   75
CONECT   75  163  164  165
END
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SMILES for HMDB0034996 (Ginsenoside Rb2)

CC(C)=CCCC(C)(OC1OC(COC2OCC(O)C(O)C2O)C(O)C(O)C1O)C1CCC2(C)C1C(O)CC1C3(C)CCC(OC4OC(CO)C(O)C(O)C4OC4OC(CO)C(O)C(O)C4O)C(C)(C)C3CCC21C
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INCHI for HMDB0034996 (Ginsenoside Rb2)

InChI=1S/C53H90O22/c1-23(2)10-9-14-53(8,75-47-43(67)39(63)37(61)29(72-47)22-69-45-41(65)34(58)26(57)21-68-45)24-11-16-52(7)33(24)25(56)18-31-50(5)15-13-32(49(3,4)30(50)12-17-51(31,52)6)73-48-44(40(64)36(60)28(20-55)71-48)74-46-42(66)38(62)35(59)27(19-54)70-46/h10,24-48,54-67H,9,11-22H2,1-8H3
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View in JSmolView NMR AssignmentsView Stereo Labels
SynonymsNot Available
Chemical FormulaC53H90O22
Average Molecular Weight1079.2685
Monoisotopic Molecular Weight1078.592374564
IUPAC Name2-{[2-(5-{[4,5-dihydroxy-6-(hydroxymethyl)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-16-hydroxy-2,6,6,10,11-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl)-6-methylhept-5-en-2-yl]oxy}-6-{[(3,4,5-trihydroxyoxan-2-yl)oxy]methyl}oxane-3,4,5-triol
Traditional Name2-{[2-(5-{[4,5-dihydroxy-6-(hydroxymethyl)-3-{[3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-16-hydroxy-2,6,6,10,11-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-14-yl)-6-methylhept-5-en-2-yl]oxy}-6-{[(3,4,5-trihydroxyoxan-2-yl)oxy]methyl}oxane-3,4,5-triol
CAS Registry Number11021-13-9
SMILES
CC(C)=CCCC(C)(OC1OC(COC2OCC(O)C(O)C2O)C(O)C(O)C1O)C1CCC2(C)C1C(O)CC1C3(C)CCC(OC4OC(CO)C(O)C(O)C4OC4OC(CO)C(O)C(O)C4O)C(C)(C)C3CCC21C
InChI Identifier
InChI=1S/C53H90O22/c1-23(2)10-9-14-53(8,75-47-43(67)39(63)37(61)29(72-47)22-69-45-41(65)34(58)26(57)21-68-45)24-11-16-52(7)33(24)25(56)18-31-50(5)15-13-32(49(3,4)30(50)12-17-51(31,52)6)73-48-44(40(64)36(60)28(20-55)71-48)74-46-42(66)38(62)35(59)27(19-54)70-46/h10,24-48,54-67H,9,11-22H2,1-8H3
InChI KeyNODILNFGTFIURN-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTriterpenoids
Direct ParentTriterpenoids
Alternative Parents
Substituents
  • Triterpenoid
  • Steroidal glycoside
  • 12-hydroxysteroid
  • Hydroxysteroid
  • Steroid
  • Fatty acyl glycoside
  • Fatty acyl glycoside of mono- or disaccharide
  • Alkyl glycoside
  • Disaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Fatty acyl
  • Oxane
  • Cyclic alcohol
  • Secondary alcohol
  • Polyol
  • Acetal
  • Organoheterocyclic compound
  • Oxacycle
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Alcohol
  • Primary alcohol
  • Organooxygen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationSource
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point200 - 203 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.78 g/LALOGPS
logP-0.02ALOGPS
logP-0.92ChemAxon
logS-3.1ALOGPS
pKa (Strongest Acidic)11.75ChemAxon
pKa (Strongest Basic)-3.6ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count22ChemAxon
Hydrogen Donor Count14ChemAxon
Polar Surface Area357.06 ŲChemAxon
Rotatable Bond Count15ChemAxon
Refractivity260.93 m³·mol⁻¹ChemAxon
Polarizability115.38 ųChemAxon
Number of Rings8ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-343.97130932474
DeepCCS[M+Na]+317.99230932474
AllCCS[M+H]+325.432859911
AllCCS[M+H-H2O]+325.732859911
AllCCS[M+NH4]+325.132859911
AllCCS[M+Na]+325.032859911
AllCCS[M-H]-273.932859911
AllCCS[M+Na-2H]-280.632859911
AllCCS[M+HCOO]-287.932859911

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 LC-ESI-QTOF , positive-QTOFsplash10-0699-4011709522-69d2baf55af443a5f1532017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 LC-ESI-QTOF , positive-QTOFsplash10-0a6r-0022902100-6fc097296ea9e7dddd6d2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 LC-ESI-QTOF , positive-QTOFsplash10-056r-0033910000-6eeb92d41bd31546aa0c2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 LC-ESI-QTOF , positive-QTOFsplash10-056r-0043910000-84ab14ddff3b649f8ab62017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 LC-ESI-QTOF , positive-QTOFsplash10-056r-0032910000-27534c56fde7e7bdf3402017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 40V, Positive-QTOFsplash10-056r-0043910000-e2e194de46de2e37f9f62021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 50V, Positive-QTOFsplash10-056r-0032910000-c0ded4c8691ff6dd5efa2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 30V, Positive-QTOFsplash10-056r-0033910000-891b4e951cf64ed4aae82021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 20V, Positive-QTOFsplash10-0a6r-0022902100-be8186092aea9f945bbd2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 6V, Positive-QTOFsplash10-004i-9000000000-e6bf31867020300a66b32021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 6V, Positive-QTOFsplash10-004i-9000000000-20f9963553cc81f2a0b12021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 6V, Positive-QTOFsplash10-004i-9000000000-1482f2dc717915a4282a2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 6V, Positive-QTOFsplash10-0002-2900000000-76ab45da225351a2dd4d2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 6V, Positive-QTOFsplash10-052b-1573903201-ffae32dbadc03cdd18cc2021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 6V, Positive-QTOFsplash10-0a6s-0484902000-cfcbf0b08b0627bd9bd92021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 6V, Positive-QTOFsplash10-004i-9000000000-ec8a44b23a1b5037e7a82021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 6V, Positive-QTOFsplash10-000t-3900000100-da139acdc82652f88c602021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 10V, Positive-QTOFsplash10-0699-4011709522-69d2baf55af443a5f1532021-09-20HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Ginsenoside Rb2 6V, Positive-QTOFsplash10-0002-3900000000-a406ceb0f354840491ff2021-09-20HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ginsenoside Rb2 10V, Positive-QTOFsplash10-029j-5100101931-f1fb7c250bf41fa194d02015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ginsenoside Rb2 20V, Positive-QTOFsplash10-0c09-1200506921-0fe6e245ee23cf59dc462015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ginsenoside Rb2 40V, Positive-QTOFsplash10-0ab9-3610907610-1d7780c8ece6974c6ea82015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ginsenoside Rb2 10V, Negative-QTOFsplash10-057j-9710002622-089c7e02c74d5f52c8402015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ginsenoside Rb2 20V, Negative-QTOFsplash10-0faj-3900101511-c3a5e6e20236ce44a1162015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Ginsenoside Rb2 40V, Negative-QTOFsplash10-0m2c-4900202200-993b9d53dd9fb1d331862015-04-25Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Predicted 1D NMR13C NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 100 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 1000 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 200 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 300 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 400 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 500 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 600 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 700 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 800 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR13C NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Predicted 1D NMR1H NMR Spectrum (1D, 900 MHz, D2O, predicted)2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB013599
KNApSAcK IDC00030396
Chemspider ID382455
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound432450
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.