Hmdb loader

Showing metabocard for Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] (HMDB0035494)

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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 20:29:46 UTC
Update Date2022-03-07 02:54:31 UTC
HMDB IDHMDB0035494
Secondary Accession Numbers
  • HMDB35494
Metabolite Identification
Common NameProtopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside]
DescriptionProtopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units. Based on a literature review a significant number of articles have been published on Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside].
Structure
Data?1563862728
MOL3D MOLSDF3D SDFPDB3D PDBSMILESInChI

MOL for HMDB0035494 (Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside])


  Mrv0541 05061308302D          

 64 70  0  0  0  0            999 V2000
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M  END
Download

3D MOL for HMDB0035494 (Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside])

HMDB0035494
     RDKit          3D
Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside]
144150  0  0  0  0  0  0  0  0999 V2000
   -6.1096   -3.6431    1.9694 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2688   -3.2368    3.1337 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1978   -4.0968    4.3208 C   0  0  0  0  0  0  0  0  0  0  0  0
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   12.1337   -0.1254   -2.0895 H   0  0  0  0  0  0  0  0  0  0  0  0
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   11.2624   -1.2049    1.2337 H   0  0  0  0  0  0  0  0  0  0  0  0
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   11.6176    1.6676    1.2805 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

3D SDF for HMDB0035494 (Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside])


  Mrv0541 05061308302D          

 64 70  0  0  0  0            999 V2000
    8.9565    5.3469    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2698    3.9528    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.2902   -1.5626    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2296   -1.5748    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4432    1.1338    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8936    1.1270    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6870   -0.0733    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3966    2.3768    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6599    3.5911    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.9057    4.3785    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.8558    1.1734    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.7335    0.7131    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    2.0334   -0.5325    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
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    6.6091    2.6227    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.2531   -0.5821    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -1.5530    0.6635    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -0.1051   -0.9698    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
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 14  9  1  0  0  0  0
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 64 47  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0035494

> <DATABASE_NAME>
hmdb

> <SMILES>
CC(C)=CCCC(C)(OC1OC(CO)C(O)C(O)C1OC1OCC(O)C(O)C1O)C1CCC2(C)C1C(O)CC1C3(C)CCC(OC4OC(CO)C(O)C(O)C4O)C(C)(C)C3CCC21C

> <INCHI_IDENTIFIER>
InChI=1S/C47H80O17/c1-22(2)10-9-14-47(8,64-42-39(36(56)34(54)27(20-49)61-42)63-40-37(57)32(52)25(51)21-59-40)23-11-16-46(7)31(23)24(50)18-29-44(5)15-13-30(43(3,4)28(44)12-17-45(29,46)6)62-41-38(58)35(55)33(53)26(19-48)60-41/h10,23-42,48-58H,9,11-21H2,1-8H3

> <INCHI_KEY>
IFSJMEMWKHAUOE-UHFFFAOYSA-N

> <FORMULA>
C47H80O17

> <MOLECULAR_WEIGHT>
917.1279

> <EXACT_MASS>
916.539551134

> <JCHEM_ACCEPTOR_COUNT>
17

> <JCHEM_AVERAGE_POLARIZABILITY>
100.59410107068507

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
11

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-{[14-(2-{[4,5-dihydroxy-6-(hydroxymethyl)-3-[(3,4,5-trihydroxyoxan-2-yl)oxy]oxan-2-yl]oxy}-6-methylhept-5-en-2-yl)-16-hydroxy-2,6,6,10,11-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <ALOGPS_LOGP>
1.06

> <JCHEM_LOGP>
0.8497658100000014

> <ALOGPS_LOGS>
-3.61

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
7

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.333141235148297

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.861669445175094

> <JCHEM_PKA_STRONGEST_BASIC>
-3.526580682616741

> <JCHEM_POLAR_SURFACE_AREA>
277.90999999999997

> <JCHEM_REFRACTIVITY>
228.51330000000007

> <JCHEM_ROTATABLE_BOND_COUNT>
12

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.24e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-{[14-(2-{[4,5-dihydroxy-6-(hydroxymethyl)-3-[(3,4,5-trihydroxyoxan-2-yl)oxy]oxan-2-yl]oxy}-6-methylhept-5-en-2-yl)-16-hydroxy-2,6,6,10,11-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$
Download

3D-SDF for HMDB0035494 (Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside])

HMDB0035494
     RDKit          3D
Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside]
144150  0  0  0  0  0  0  0  0999 V2000
   -6.1096   -3.6431    1.9694 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2688   -3.2368    3.1337 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1978   -4.0968    4.3208 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.5936   -2.1080    3.0913 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.6385   -1.1983    1.8944 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2060   -1.0869    1.3937 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1432   -0.1712    0.1675 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.6575    1.1745    0.7297 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1976   -0.5675   -0.6231 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4669   -0.0803   -1.8116 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3494   -0.9428   -2.8918 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -8.8748    1.1470   -1.2422 O   0  0  0  0  0  0  0  0  0  0  0  0
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   -9.0108    2.4504    0.8052 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0008    3.1319    1.5244 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.6197    1.2661    1.6203 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6223    1.5785    2.5608 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0652    0.1889    0.7033 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1543   -0.6572    0.4018 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8317   -0.0485   -0.4293 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.1291   -1.2481   -0.9622 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1290   -0.5582   -1.5435 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2837    0.7324   -0.8220 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2445    1.8293   -1.7416 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6924    0.5636    0.3603 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1266   -0.2670    1.4339 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.1941    0.4689    2.6439 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3715   -0.5912    1.2943 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.0788    0.6678    0.9578 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5496    0.5281    1.1721 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6827    0.0032    2.6095 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.3222    1.8011    1.1263 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7981    1.5905    1.3170 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3812    0.5612    0.4186 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.6396    0.1621    0.9162 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.6719    0.4862    0.0059 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.2102   -0.6570   -0.5262 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.5669   -0.6833   -0.6863 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.0264    0.0421   -1.9337 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.4286   -0.5819   -3.0366 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.3330   -0.3184    0.5449 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.6699   -0.1344    0.1826 O   0  0  0  0  0  0  0  0  0  0  0  0
   10.8233    0.8634    1.2858 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.5374    0.5646    2.6346 O   0  0  0  0  0  0  0  0  0  0  0  0
    9.6219    1.4403    0.6308 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.8855    2.1367    1.6283 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.5752   -0.6871    0.2646 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9027   -1.7063    1.3590 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.0368   -1.3373   -1.0361 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0761   -0.4608    0.1783 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6580   -0.1986   -1.2045 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6437    0.8306   -1.4847 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6578    1.1446   -0.3999 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6026    2.6837   -0.2797 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3997   -3.7217    1.1017 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8545   -2.8253    1.7837 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5785   -4.6215    2.1439 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2252   -4.1007    4.7875 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8925   -5.1264    4.0546 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END
Download

PDB for HMDB0035494 (Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside])

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      16.719   9.981   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      17.304   7.379   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       6.142  -2.917   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       4.162  -2.940   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       6.427   2.116   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       9.135   2.104   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      10.616  -0.137   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0      13.807   4.437   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0      14.298   6.703   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0      14.757   8.173   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      12.797   2.190   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       7.805  -1.718   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0       3.778   0.546   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0      12.796   6.366   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       5.103   1.331   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0      11.907   0.934   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       9.130  -0.932   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       7.752   2.902   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0      -2.863  -1.841   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      12.457  10.447   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.649   8.693   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0      16.260   8.511   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0      11.878   3.426   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.076   3.687   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       3.517   7.649   0.000  0.00  0.00           C+0
HETATM   26  C   UNK     0      -1.539  -1.056   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      11.324   9.403   0.000  0.00  0.00           C+0
HETATM   28  C   UNK     0       6.463  -0.963   0.000  0.00  0.00           C+0
HETATM   29  C   UNK     0       7.770   1.362   0.000  0.00  0.00           C+0
HETATM   30  C   UNK     0       3.796  -0.994   0.000  0.00  0.00           C+0
HETATM   31  C   UNK     0      10.419   2.933   0.000  0.00  0.00           C+0
HETATM   32  C   UNK     0       3.854   6.147   0.000  0.00  0.00           C+0
HETATM   33  C   UNK     0      -1.556   0.484   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0       9.854   9.862   0.000  0.00  0.00           C+0
HETATM   35  C   UNK     0      -0.232   1.269   0.000  0.00  0.00           C+0
HETATM   36  C   UNK     0       8.722   8.819   0.000  0.00  0.00           C+0
HETATM   37  C   UNK     0       5.324   5.688   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0       1.111   0.515   0.000  0.00  0.00           C+0
HETATM   39  C   UNK     0       9.059   7.316   0.000  0.00  0.00           C+0
HETATM   40  C   UNK     0       6.457   6.731   0.000  0.00  0.00           C+0
HETATM   41  C   UNK     0       1.128  -1.025   0.000  0.00  0.00           C+0
HETATM   42  C   UNK     0      10.529   6.857   0.000  0.00  0.00           C+0
HETATM   43  C   UNK     0       5.138  -1.749   0.000  0.00  0.00           C+0
HETATM   44  C   UNK     0       6.445   0.577   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0       9.112   0.607   0.000  0.00  0.00           C+0
HETATM   46  C   UNK     0      10.437   1.393   0.000  0.00  0.00           C+0
HETATM   47  C   UNK     0      12.337   4.896   0.000  0.00  0.00           C+0
HETATM   48  O   UNK     0      -4.206  -1.087   0.000  0.00  0.00           O+0
HETATM   49  O   UNK     0      13.927   9.988   0.000  0.00  0.00           O+0
HETATM   50  O   UNK     0       9.059   5.227   0.000  0.00  0.00           O+0
HETATM   51  O   UNK     0       2.047   8.108   0.000  0.00  0.00           O+0
HETATM   52  O   UNK     0       2.722   5.103   0.000  0.00  0.00           O+0
HETATM   53  O   UNK     0      -2.899   1.239   0.000  0.00  0.00           O+0
HETATM   54  O   UNK     0       9.517  11.365   0.000  0.00  0.00           O+0
HETATM   55  O   UNK     0      -0.250   2.809   0.000  0.00  0.00           O+0
HETATM   56  O   UNK     0       7.252   9.277   0.000  0.00  0.00           O+0
HETATM   57  O   UNK     0       5.662   4.185   0.000  0.00  0.00           O+0
HETATM   58  O   UNK     0       2.435   1.300   0.000  0.00  0.00           O+0
HETATM   59  O   UNK     0       6.119   8.234   0.000  0.00  0.00           O+0
HETATM   60  O   UNK     0      -0.196  -1.810   0.000  0.00  0.00           O+0
HETATM   61  O   UNK     0      11.662   7.901   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0       2.471  -1.779   0.000  0.00  0.00           O+0
HETATM   63  O   UNK     0       7.927   6.272   0.000  0.00  0.00           O+0
HETATM   64  O   UNK     0      10.867   5.355   0.000  0.00  0.00           O+0
CONECT    1   22                                                            
CONECT    2   22                                                            
CONECT    3   43                                                            
CONECT    4   43                                                            
CONECT    5   44                                                            
CONECT    6   45                                                            
CONECT    7   46                                                            
CONECT    8   47                                                            
CONECT    9   10   14                                                       
CONECT   10    9   22                                                       
CONECT   11   16   23                                                       
CONECT   12   17   28                                                       
CONECT   13   15   30                                                       
CONECT   14    9   47                                                       
CONECT   15   13   44                                                       
CONECT   16   11   46                                                       
CONECT   17   12   45                                                       
CONECT   18   24   29                                                       
CONECT   19   26   48                                                       
CONECT   20   27   49                                                       
CONECT   21   25   59                                                       
CONECT   22    1    2   10                                                  
CONECT   23   11   31   47                                                  
CONECT   24   18   31   50                                                  
CONECT   25   21   32   51                                                  
CONECT   26   19   33   60                                                  
CONECT   27   20   34   61                                                  
CONECT   28   12   43   44                                                  
CONECT   29   18   44   45                                                  
CONECT   30   13   43   62                                                  
CONECT   31   23   24   46                                                  
CONECT   32   25   37   52                                                  
CONECT   33   26   35   53                                                  
CONECT   34   27   36   54                                                  
CONECT   35   33   38   55                                                  
CONECT   36   34   39   56                                                  
CONECT   37   32   40   57                                                  
CONECT   38   35   41   58                                                  
CONECT   39   36   42   63                                                  
CONECT   40   37   59   63                                                  
CONECT   41   38   60   62                                                  
CONECT   42   39   61   64                                                  
CONECT   43    3    4   28   30                                             
CONECT   44    5   15   28   29                                             
CONECT   45    6   17   29   46                                             
CONECT   46    7   16   31   45                                             
CONECT   47    8   14   23   64                                             
CONECT   48   19                                                            
CONECT   49   20                                                            
CONECT   50   24                                                            
CONECT   51   25                                                            
CONECT   52   32                                                            
CONECT   53   33                                                            
CONECT   54   34                                                            
CONECT   55   35                                                            
CONECT   56   36                                                            
CONECT   57   37                                                            
CONECT   58   38                                                            
CONECT   59   21   40                                                       
CONECT   60   26   41                                                       
CONECT   61   27   42                                                       
CONECT   62   30   41                                                       
CONECT   63   39   40                                                       
CONECT   64   42   47                                                       
MASTER        0    0    0    0    0    0    0    0   64    0  140    0
END
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3D PDB for HMDB0035494 (Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside])

COMPND    HMDB0035494
HETATM    1  C1  UNL     1      -6.110  -3.643   1.969  1.00  0.00           C  
HETATM    2  C2  UNL     1      -5.269  -3.237   3.134  1.00  0.00           C  
HETATM    3  C3  UNL     1      -5.198  -4.097   4.321  1.00  0.00           C  
HETATM    4  C4  UNL     1      -4.594  -2.108   3.091  1.00  0.00           C  
HETATM    5  C5  UNL     1      -4.638  -1.198   1.894  1.00  0.00           C  
HETATM    6  C6  UNL     1      -3.206  -1.087   1.394  1.00  0.00           C  
HETATM    7  C7  UNL     1      -3.143  -0.171   0.168  1.00  0.00           C  
HETATM    8  C8  UNL     1      -3.658   1.174   0.730  1.00  0.00           C  
HETATM    9  O1  UNL     1      -4.198  -0.568  -0.623  1.00  0.00           O  
HETATM   10  C9  UNL     1      -4.467  -0.080  -1.812  1.00  0.00           C  
HETATM   11  O2  UNL     1      -4.349  -0.943  -2.892  1.00  0.00           O  
HETATM   12  C10 UNL     1      -5.478  -1.314  -3.518  1.00  0.00           C  
HETATM   13  C11 UNL     1      -5.061  -2.031  -4.814  1.00  0.00           C  
HETATM   14  O3  UNL     1      -6.178  -2.440  -5.512  1.00  0.00           O  
HETATM   15  C12 UNL     1      -6.461  -0.288  -3.899  1.00  0.00           C  
HETATM   16  O4  UNL     1      -7.743  -0.662  -3.448  1.00  0.00           O  
HETATM   17  C13 UNL     1      -6.076   1.050  -3.326  1.00  0.00           C  
HETATM   18  O5  UNL     1      -7.193   1.849  -3.271  1.00  0.00           O  
HETATM   19  C14 UNL     1      -5.734   0.710  -1.834  1.00  0.00           C  
HETATM   20  O6  UNL     1      -6.867   0.039  -1.410  1.00  0.00           O  
HETATM   21  C15 UNL     1      -7.669   0.837  -0.589  1.00  0.00           C  
HETATM   22  O7  UNL     1      -8.875   1.147  -1.242  1.00  0.00           O  
HETATM   23  C16 UNL     1      -9.499   2.157  -0.571  1.00  0.00           C  
HETATM   24  C17 UNL     1      -9.011   2.450   0.805  1.00  0.00           C  
HETATM   25  O8  UNL     1     -10.001   3.132   1.524  1.00  0.00           O  
HETATM   26  C18 UNL     1      -8.620   1.266   1.620  1.00  0.00           C  
HETATM   27  O9  UNL     1      -7.622   1.578   2.561  1.00  0.00           O  
HETATM   28  C19 UNL     1      -8.065   0.189   0.703  1.00  0.00           C  
HETATM   29  O10 UNL     1      -9.154  -0.657   0.402  1.00  0.00           O  
HETATM   30  C20 UNL     1      -1.832  -0.049  -0.429  1.00  0.00           C  
HETATM   31  C21 UNL     1      -1.129  -1.248  -0.962  1.00  0.00           C  
HETATM   32  C22 UNL     1       0.129  -0.558  -1.544  1.00  0.00           C  
HETATM   33  C23 UNL     1       0.284   0.732  -0.822  1.00  0.00           C  
HETATM   34  C24 UNL     1      -0.244   1.829  -1.742  1.00  0.00           C  
HETATM   35  C25 UNL     1      -0.692   0.564   0.360  1.00  0.00           C  
HETATM   36  C26 UNL     1      -0.127  -0.267   1.434  1.00  0.00           C  
HETATM   37  O11 UNL     1      -0.194   0.469   2.644  1.00  0.00           O  
HETATM   38  C27 UNL     1       1.372  -0.591   1.294  1.00  0.00           C  
HETATM   39  C28 UNL     1       2.079   0.668   0.958  1.00  0.00           C  
HETATM   40  C29 UNL     1       3.550   0.528   1.172  1.00  0.00           C  
HETATM   41  C30 UNL     1       3.683   0.003   2.610  1.00  0.00           C  
HETATM   42  C31 UNL     1       4.322   1.801   1.126  1.00  0.00           C  
HETATM   43  C32 UNL     1       5.798   1.591   1.317  1.00  0.00           C  
HETATM   44  C33 UNL     1       6.381   0.561   0.419  1.00  0.00           C  
HETATM   45  O12 UNL     1       7.640   0.162   0.916  1.00  0.00           O  
HETATM   46  C34 UNL     1       8.672   0.486   0.006  1.00  0.00           C  
HETATM   47  O13 UNL     1       9.210  -0.657  -0.526  1.00  0.00           O  
HETATM   48  C35 UNL     1      10.567  -0.683  -0.686  1.00  0.00           C  
HETATM   49  C36 UNL     1      11.026   0.042  -1.934  1.00  0.00           C  
HETATM   50  O14 UNL     1      10.429  -0.582  -3.037  1.00  0.00           O  
HETATM   51  C37 UNL     1      11.333  -0.318   0.545  1.00  0.00           C  
HETATM   52  O15 UNL     1      12.670  -0.134   0.183  1.00  0.00           O  
HETATM   53  C38 UNL     1      10.823   0.863   1.286  1.00  0.00           C  
HETATM   54  O16 UNL     1      10.537   0.565   2.635  1.00  0.00           O  
HETATM   55  C39 UNL     1       9.622   1.440   0.631  1.00  0.00           C  
HETATM   56  O17 UNL     1       8.886   2.137   1.628  1.00  0.00           O  
HETATM   57  C40 UNL     1       5.575  -0.687   0.265  1.00  0.00           C  
HETATM   58  C41 UNL     1       5.903  -1.706   1.359  1.00  0.00           C  
HETATM   59  C42 UNL     1       6.037  -1.337  -1.036  1.00  0.00           C  
HETATM   60  C43 UNL     1       4.076  -0.461   0.178  1.00  0.00           C  
HETATM   61  C44 UNL     1       3.658  -0.199  -1.204  1.00  0.00           C  
HETATM   62  C45 UNL     1       2.644   0.831  -1.485  1.00  0.00           C  
HETATM   63  C46 UNL     1       1.658   1.145  -0.400  1.00  0.00           C  
HETATM   64  C47 UNL     1       1.603   2.684  -0.280  1.00  0.00           C  
HETATM   65  H1  UNL     1      -5.400  -3.722   1.102  1.00  0.00           H  
HETATM   66  H2  UNL     1      -6.855  -2.825   1.784  1.00  0.00           H  
HETATM   67  H3  UNL     1      -6.579  -4.622   2.144  1.00  0.00           H  
HETATM   68  H4  UNL     1      -6.225  -4.101   4.787  1.00  0.00           H  
HETATM   69  H5  UNL     1      -4.892  -5.126   4.055  1.00  0.00           H  
HETATM   70  H6  UNL     1      -4.464  -3.701   5.069  1.00  0.00           H  
HETATM   71  H7  UNL     1      -3.979  -1.792   3.919  1.00  0.00           H  
HETATM   72  H8  UNL     1      -4.958  -0.225   2.268  1.00  0.00           H  
HETATM   73  H9  UNL     1      -5.283  -1.644   1.104  1.00  0.00           H  
HETATM   74  H10 UNL     1      -2.738  -2.055   1.242  1.00  0.00           H  
HETATM   75  H11 UNL     1      -2.684  -0.604   2.264  1.00  0.00           H  
HETATM   76  H12 UNL     1      -3.282   1.317   1.765  1.00  0.00           H  
HETATM   77  H13 UNL     1      -3.387   1.983   0.048  1.00  0.00           H  
HETATM   78  H14 UNL     1      -4.764   1.184   0.821  1.00  0.00           H  
HETATM   79  H15 UNL     1      -3.690   0.719  -2.077  1.00  0.00           H  
HETATM   80  H16 UNL     1      -5.979  -2.113  -2.918  1.00  0.00           H  
HETATM   81  H17 UNL     1      -4.572  -1.227  -5.438  1.00  0.00           H  
HETATM   82  H18 UNL     1      -4.326  -2.811  -4.615  1.00  0.00           H  
HETATM   83  H19 UNL     1      -6.797  -2.949  -4.942  1.00  0.00           H  
HETATM   84  H20 UNL     1      -6.586  -0.167  -5.004  1.00  0.00           H  
HETATM   85  H21 UNL     1      -7.731  -1.542  -2.996  1.00  0.00           H  
HETATM   86  H22 UNL     1      -5.211   1.470  -3.834  1.00  0.00           H  
HETATM   87  H23 UNL     1      -7.757   1.764  -4.071  1.00  0.00           H  
HETATM   88  H24 UNL     1      -5.709   1.692  -1.318  1.00  0.00           H  
HETATM   89  H25 UNL     1      -7.167   1.795  -0.438  1.00  0.00           H  
HETATM   90  H26 UNL     1      -9.527   3.116  -1.153  1.00  0.00           H  
HETATM   91  H27 UNL     1     -10.593   1.888  -0.462  1.00  0.00           H  
HETATM   92  H28 UNL     1      -8.116   3.134   0.734  1.00  0.00           H  
HETATM   93  H29 UNL     1     -10.212   4.011   1.083  1.00  0.00           H  
HETATM   94  H30 UNL     1      -9.499   0.871   2.147  1.00  0.00           H  
HETATM   95  H31 UNL     1      -7.920   2.362   3.116  1.00  0.00           H  
HETATM   96  H32 UNL     1      -7.250  -0.363   1.163  1.00  0.00           H  
HETATM   97  H33 UNL     1      -9.937  -0.473   0.975  1.00  0.00           H  
HETATM   98  H34 UNL     1      -1.912   0.659  -1.313  1.00  0.00           H  
HETATM   99  H35 UNL     1      -0.822  -2.003  -0.241  1.00  0.00           H  
HETATM  100  H36 UNL     1      -1.696  -1.780  -1.754  1.00  0.00           H  
HETATM  101  H37 UNL     1      -0.167  -0.399  -2.628  1.00  0.00           H  
HETATM  102  H38 UNL     1       0.981  -1.214  -1.609  1.00  0.00           H  
HETATM  103  H39 UNL     1       0.615   2.452  -2.142  1.00  0.00           H  
HETATM  104  H40 UNL     1      -0.664   1.407  -2.702  1.00  0.00           H  
HETATM  105  H41 UNL     1      -1.028   2.444  -1.308  1.00  0.00           H  
HETATM  106  H42 UNL     1      -0.931   1.609   0.670  1.00  0.00           H  
HETATM  107  H43 UNL     1      -0.548  -1.252   1.616  1.00  0.00           H  
HETATM  108  H44 UNL     1      -0.301  -0.120   3.415  1.00  0.00           H  
HETATM  109  H45 UNL     1       1.564  -1.459   0.669  1.00  0.00           H  
HETATM  110  H46 UNL     1       1.641  -0.959   2.333  1.00  0.00           H  
HETATM  111  H47 UNL     1       1.744   1.413   1.748  1.00  0.00           H  
HETATM  112  H48 UNL     1       3.636  -1.080   2.673  1.00  0.00           H  
HETATM  113  H49 UNL     1       4.579   0.405   3.123  1.00  0.00           H  
HETATM  114  H50 UNL     1       2.833   0.408   3.239  1.00  0.00           H  
HETATM  115  H51 UNL     1       4.236   2.321   0.126  1.00  0.00           H  
HETATM  116  H52 UNL     1       3.992   2.475   1.955  1.00  0.00           H  
HETATM  117  H53 UNL     1       6.268   2.579   1.016  1.00  0.00           H  
HETATM  118  H54 UNL     1       6.125   1.459   2.359  1.00  0.00           H  
HETATM  119  H55 UNL     1       6.497   1.029  -0.592  1.00  0.00           H  
HETATM  120  H56 UNL     1       8.188   1.015  -0.876  1.00  0.00           H  
HETATM  121  H57 UNL     1      10.825  -1.771  -0.890  1.00  0.00           H  
HETATM  122  H58 UNL     1      10.898   1.124  -1.909  1.00  0.00           H  
HETATM  123  H59 UNL     1      12.134  -0.125  -2.089  1.00  0.00           H  
HETATM  124  H60 UNL     1      10.199   0.056  -3.750  1.00  0.00           H  
HETATM  125  H61 UNL     1      11.262  -1.205   1.234  1.00  0.00           H  
HETATM  126  H62 UNL     1      12.935  -0.927  -0.345  1.00  0.00           H  
HETATM  127  H63 UNL     1      11.618   1.668   1.280  1.00  0.00           H  
HETATM  128  H64 UNL     1      10.705  -0.398   2.744  1.00  0.00           H  
HETATM  129  H65 UNL     1       9.889   2.267  -0.093  1.00  0.00           H  
HETATM  130  H66 UNL     1       8.639   1.525   2.362  1.00  0.00           H  
HETATM  131  H67 UNL     1       6.145  -1.220   2.319  1.00  0.00           H  
HETATM  132  H68 UNL     1       5.126  -2.468   1.414  1.00  0.00           H  
HETATM  133  H69 UNL     1       6.840  -2.235   1.050  1.00  0.00           H  
HETATM  134  H70 UNL     1       5.266  -1.921  -1.530  1.00  0.00           H  
HETATM  135  H71 UNL     1       6.519  -0.578  -1.711  1.00  0.00           H  
HETATM  136  H72 UNL     1       6.874  -2.067  -0.822  1.00  0.00           H  
HETATM  137  H73 UNL     1       3.646  -1.455   0.520  1.00  0.00           H  
HETATM  138  H74 UNL     1       4.586   0.079  -1.796  1.00  0.00           H  
HETATM  139  H75 UNL     1       3.377  -1.187  -1.682  1.00  0.00           H  
HETATM  140  H76 UNL     1       3.117   1.772  -1.908  1.00  0.00           H  
HETATM  141  H77 UNL     1       2.062   0.475  -2.395  1.00  0.00           H  
HETATM  142  H78 UNL     1       2.182   3.173  -1.069  1.00  0.00           H  
HETATM  143  H79 UNL     1       2.038   3.040   0.688  1.00  0.00           H  
HETATM  144  H80 UNL     1       0.544   3.046  -0.198  1.00  0.00           H  
CONECT    1    2   65   66   67
CONECT    2    3    4    4
CONECT    3   68   69   70
CONECT    4    5   71
CONECT    5    6   72   73
CONECT    6    7   74   75
CONECT    7    8    9   30
CONECT    8   76   77   78
CONECT    9   10
CONECT   10   11   19   79
CONECT   11   12
CONECT   12   13   15   80
CONECT   13   14   81   82
CONECT   14   83
CONECT   15   16   17   84
CONECT   16   85
CONECT   17   18   19   86
CONECT   18   87
CONECT   19   20   88
CONECT   20   21
CONECT   21   22   28   89
CONECT   22   23
CONECT   23   24   90   91
CONECT   24   25   26   92
CONECT   25   93
CONECT   26   27   28   94
CONECT   27   95
CONECT   28   29   96
CONECT   29   97
CONECT   30   31   35   98
CONECT   31   32   99  100
CONECT   32   33  101  102
CONECT   33   34   35   63
CONECT   34  103  104  105
CONECT   35   36  106
CONECT   36   37   38  107
CONECT   37  108
CONECT   38   39  109  110
CONECT   39   40   63  111
CONECT   40   41   42   60
CONECT   41  112  113  114
CONECT   42   43  115  116
CONECT   43   44  117  118
CONECT   44   45   57  119
CONECT   45   46
CONECT   46   47   55  120
CONECT   47   48
CONECT   48   49   51  121
CONECT   49   50  122  123
CONECT   50  124
CONECT   51   52   53  125
CONECT   52  126
CONECT   53   54   55  127
CONECT   54  128
CONECT   55   56  129
CONECT   56  130
CONECT   57   58   59   60
CONECT   58  131  132  133
CONECT   59  134  135  136
CONECT   60   61  137
CONECT   61   62  138  139
CONECT   62   63  140  141
CONECT   63   64
CONECT   64  142  143  144
END
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SMILES for HMDB0035494 (Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside])

CC(C)=CCCC(C)(OC1OC(CO)C(O)C(O)C1OC1OCC(O)C(O)C1O)C1CCC2(C)C1C(O)CC1C3(C)CCC(OC4OC(CO)C(O)C(O)C4O)C(C)(C)C3CCC21C
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INCHI for HMDB0035494 (Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside])

InChI=1S/C47H80O17/c1-22(2)10-9-14-47(8,64-42-39(36(56)34(54)27(20-49)61-42)63-40-37(57)32(52)25(51)21-59-40)23-11-16-46(7)31(23)24(50)18-29-44(5)15-13-30(43(3,4)28(44)12-17-45(29,46)6)62-41-38(58)35(55)33(53)26(19-48)60-41/h10,23-42,48-58H,9,11-21H2,1-8H3
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View in JSmolView Stereo Labels
SynonymsNot Available
Chemical FormulaC47H80O17
Average Molecular Weight917.1279
Monoisotopic Molecular Weight916.539551134
IUPAC Name2-{[14-(2-{[4,5-dihydroxy-6-(hydroxymethyl)-3-[(3,4,5-trihydroxyoxan-2-yl)oxy]oxan-2-yl]oxy}-6-methylhept-5-en-2-yl)-16-hydroxy-2,6,6,10,11-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol
Traditional Name2-{[14-(2-{[4,5-dihydroxy-6-(hydroxymethyl)-3-[(3,4,5-trihydroxyoxan-2-yl)oxy]oxan-2-yl]oxy}-6-methylhept-5-en-2-yl)-16-hydroxy-2,6,6,10,11-pentamethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecan-5-yl]oxy}-6-(hydroxymethyl)oxane-3,4,5-triol
CAS Registry Number259795-17-0
SMILES
CC(C)=CCCC(C)(OC1OC(CO)C(O)C(O)C1OC1OCC(O)C(O)C1O)C1CCC2(C)C1C(O)CC1C3(C)CCC(OC4OC(CO)C(O)C(O)C4O)C(C)(C)C3CCC21C
InChI Identifier
InChI=1S/C47H80O17/c1-22(2)10-9-14-47(8,64-42-39(36(56)34(54)27(20-49)61-42)63-40-37(57)32(52)25(51)21-59-40)23-11-16-46(7)31(23)24(50)18-29-44(5)15-13-30(43(3,4)28(44)12-17-45(29,46)6)62-41-38(58)35(55)33(53)26(19-48)60-41/h10,23-42,48-58H,9,11-21H2,1-8H3
InChI KeyIFSJMEMWKHAUOE-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as triterpenoids. These are terpene molecules containing six isoprene units.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassTriterpenoids
Direct ParentTriterpenoids
Alternative Parents
Substituents
  • Triterpenoid
  • Steroidal glycoside
  • 12-hydroxysteroid
  • Hydroxysteroid
  • Steroid
  • Fatty acyl glycoside
  • Fatty acyl glycoside of mono- or disaccharide
  • Alkyl glycoside
  • Disaccharide
  • Glycosyl compound
  • O-glycosyl compound
  • Fatty acyl
  • Oxane
  • Cyclic alcohol
  • Secondary alcohol
  • Polyol
  • Acetal
  • Organoheterocyclic compound
  • Oxacycle
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Alcohol
  • Primary alcohol
  • Organooxygen compound
  • Aliphatic heteropolycyclic compound
Molecular FrameworkAliphatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Biological locationRoute of exposureSource
Process
Naturally occurring process
Role
Biological roleIndustrial application
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point189 - 192 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.22 g/LALOGPS
logP1.06ALOGPS
logP0.85ChemAxon
logS-3.6ALOGPS
pKa (Strongest Acidic)11.86ChemAxon
pKa (Strongest Basic)-3.5ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count17ChemAxon
Hydrogen Donor Count11ChemAxon
Polar Surface Area277.91 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity228.51 m³·mol⁻¹ChemAxon
Polarizability100.59 ųChemAxon
Number of Rings7ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-320.9730932474
DeepCCS[M+Na]+294.79630932474
AllCCS[M+H]+296.432859911
AllCCS[M+H-H2O]+296.432859911
AllCCS[M+NH4]+296.332859911
AllCCS[M+Na]+296.232859911
AllCCS[M-H]-249.832859911
AllCCS[M+Na-2H]-256.632859911
AllCCS[M+HCOO]-263.932859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.6.58 minutes32390414
Predicted by Siyang on May 30, 202214.9961 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20223.77 minutes32390414
AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid188.6 seconds40023050
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid3674.2 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid150.6 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid199.3 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid199.5 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid206.6 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid503.6 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid714.5 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)463.0 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1054.8 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid630.1 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1491.4 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid423.5 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid442.6 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate267.2 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA315.2 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water10.3 seconds40023050

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 10V, Positive-QTOFsplash10-0avs-0100107941-195e6c75d47f58b452d72016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 20V, Positive-QTOFsplash10-0ab9-0200509500-f63ce72d1db6fdebe1572016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 40V, Positive-QTOFsplash10-0ab9-2400709220-a6f4f914002fc5cb24952016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 10V, Negative-QTOFsplash10-0fr2-1700109874-004064ca859840940a252016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 20V, Negative-QTOFsplash10-0feb-1900207730-39d12509174dc6de968c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 40V, Negative-QTOFsplash10-0597-9700407010-b42da10faed54296f8aa2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 10V, Negative-QTOFsplash10-014i-0000000129-c39fa3b8d7a9953a3f2f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 20V, Negative-QTOFsplash10-0apl-9300000371-3db82310732da4b2445d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 40V, Negative-QTOFsplash10-052f-9300001230-ee90c4d411a3638ef82b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 10V, Positive-QTOFsplash10-0699-1001938444-25173878de602b1ebc7f2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 20V, Positive-QTOFsplash10-016r-2800915635-1a30d8c32dfdb74678922021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Protopanaxadiol 3-glucoside 20-[arabinosyl-(1->2)-glucoside] 40V, Positive-QTOFsplash10-00kb-6900000211-d6220b1e52ef095ab6162021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB014180
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound85263166
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.