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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 21:08:02 UTC
Update Date2022-03-07 02:54:46 UTC
HMDB IDHMDB0036064
Secondary Accession Numbers
  • HMDB36064
Metabolite Identification
Common Name27-Hydroxyisomangiferolic acid
Description27-Hydroxyisomangiferolic acid, also known as coenzyme Q6 or coq-6, belongs to the class of organic compounds known as cycloartanols and derivatives. These are steroids containing a cycloartanol moiety. Based on a literature review a significant number of articles have been published on 27-Hydroxyisomangiferolic acid.
Structure
Data?1563862816
Synonyms
ValueSource
27-HydroxyisomangiferolateGenerator
Coenzyme Q6HMDB
Coenzyme QQ6HMDB
Coenzyme-Q6HMDB
CoQ-6HMDB
CoQ6HMDB
Ubiquinone 30HMDB
Ubiquinone Q6HMDB
Ubiquinone(6)HMDB
UBIQUINONE-6HMDB
(2Z)-6-{6-hydroxy-7,7,12,16-tetramethylpentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-15-yl}-2-(hydroxymethyl)hept-2-enoateHMDB
27-Hydroxyisomangiferolic acidMeSH
Chemical FormulaC30H48O4
Average Molecular Weight472.6997
Monoisotopic Molecular Weight472.355260024
IUPAC Name(2Z)-6-{6-hydroxy-7,7,12,16-tetramethylpentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-15-yl}-2-(hydroxymethyl)hept-2-enoic acid
Traditional Name(2Z)-6-{6-hydroxy-7,7,12,16-tetramethylpentacyclo[9.7.0.0¹,³.0³,⁸.0¹²,¹⁶]octadecan-15-yl}-2-(hydroxymethyl)hept-2-enoic acid
CAS Registry Number123563-64-4
SMILES
CC(CC\C=C(\CO)C(O)=O)C1CCC2(C)C3CCC4C5(CC35CCC12C)CCC(O)C4(C)C
InChI Identifier
InChI=1S/C30H48O4/c1-19(7-6-8-20(17-31)25(33)34)21-11-13-28(5)23-10-9-22-26(2,3)24(32)12-14-29(22)18-30(23,29)16-15-27(21,28)4/h8,19,21-24,31-32H,6-7,9-18H2,1-5H3,(H,33,34)/b20-8-
InChI KeyYWPLTMNXKKXXII-ZBKNUEDVSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as cycloartanols and derivatives. These are steroids containing a cycloartanol moiety.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassCycloartanols and derivatives
Direct ParentCycloartanols and derivatives
Alternative Parents
Substituents
  • Cycloartanol-skeleton
  • 9b,19-cyclo-lanostane-skeleton
  • Cycloartane-skeleton
  • Triterpenoid
  • 26-hydroxysteroid
  • Dihydroxy bile acid, alcohol, or derivatives
  • Hydroxy bile acid, alcohol, or derivatives
  • Bile acid, alcohol, or derivatives
  • Steroid acid
  • 3-hydroxysteroid
  • Hydroxysteroid
  • Medium-chain fatty acid
  • Beta-hydroxy acid
  • Hydroxy fatty acid
  • Fatty acyl
  • Fatty acid
  • Unsaturated fatty acid
  • Hydroxy acid
  • Cyclic alcohol
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Alcohol
  • Primary alcohol
  • Hydrocarbon derivative
  • Carbonyl group
  • Organic oxide
  • Organic oxygen compound
  • Organooxygen compound
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point207 - 209 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.00047 g/LALOGPS
logP5.01ALOGPS
logP5.46ChemAxon
logS-6ALOGPS
pKa (Strongest Acidic)4.55ChemAxon
pKa (Strongest Basic)-0.84ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area77.76 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity135.53 m³·mol⁻¹ChemAxon
Polarizability56.52 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+210.82331661259
DarkChem[M-H]-201.80931661259
DeepCCS[M-2H]-250.26930932474
DeepCCS[M+Na]+225.62530932474
AllCCS[M+H]+217.132859911
AllCCS[M+H-H2O]+215.532859911
AllCCS[M+NH4]+218.532859911
AllCCS[M+Na]+218.932859911
AllCCS[M-H]-212.732859911
AllCCS[M+Na-2H]-215.132859911
AllCCS[M+HCOO]-218.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
27-Hydroxyisomangiferolic acidCC(CC\C=C(\CO)C(O)=O)C1CCC2(C)C3CCC4C5(CC35CCC12C)CCC(O)C4(C)C3477.9Standard polar33892256
27-Hydroxyisomangiferolic acidCC(CC\C=C(\CO)C(O)=O)C1CCC2(C)C3CCC4C5(CC35CCC12C)CCC(O)C4(C)C3616.2Standard non polar33892256
27-Hydroxyisomangiferolic acidCC(CC\C=C(\CO)C(O)=O)C1CCC2(C)C3CCC4C5(CC35CCC12C)CCC(O)C4(C)C4056.6Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
27-Hydroxyisomangiferolic acid,1TMS,isomer #1CC(CC/C=C(/CO[Si](C)(C)C)C(=O)O)C1CCC2(C)C3CCC4C(C)(C)C(O)CCC45CC35CCC12C4097.5Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,1TMS,isomer #2CC(CC/C=C(/CO)C(=O)O[Si](C)(C)C)C1CCC2(C)C3CCC4C(C)(C)C(O)CCC45CC35CCC12C3999.1Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,1TMS,isomer #3CC(CC/C=C(/CO)C(=O)O)C1CCC2(C)C3CCC4C(C)(C)C(O[Si](C)(C)C)CCC45CC35CCC12C4095.0Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,2TMS,isomer #1CC(CC/C=C(/CO[Si](C)(C)C)C(=O)O[Si](C)(C)C)C1CCC2(C)C3CCC4C(C)(C)C(O)CCC45CC35CCC12C4044.6Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,2TMS,isomer #2CC(CC/C=C(/CO[Si](C)(C)C)C(=O)O)C1CCC2(C)C3CCC4C(C)(C)C(O[Si](C)(C)C)CCC45CC35CCC12C4145.5Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,2TMS,isomer #3CC(CC/C=C(/CO)C(=O)O[Si](C)(C)C)C1CCC2(C)C3CCC4C(C)(C)C(O[Si](C)(C)C)CCC45CC35CCC12C3980.5Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,3TMS,isomer #1CC(CC/C=C(/CO[Si](C)(C)C)C(=O)O[Si](C)(C)C)C1CCC2(C)C3CCC4C(C)(C)C(O[Si](C)(C)C)CCC45CC35CCC12C3986.6Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,1TBDMS,isomer #1CC(CC/C=C(/CO[Si](C)(C)C(C)(C)C)C(=O)O)C1CCC2(C)C3CCC4C(C)(C)C(O)CCC45CC35CCC12C4321.7Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,1TBDMS,isomer #2CC(CC/C=C(/CO)C(=O)O[Si](C)(C)C(C)(C)C)C1CCC2(C)C3CCC4C(C)(C)C(O)CCC45CC35CCC12C4212.2Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,1TBDMS,isomer #3CC(CC/C=C(/CO)C(=O)O)C1CCC2(C)C3CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)CCC45CC35CCC12C4310.0Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,2TBDMS,isomer #1CC(CC/C=C(/CO[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C)C1CCC2(C)C3CCC4C(C)(C)C(O)CCC45CC35CCC12C4477.7Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,2TBDMS,isomer #2CC(CC/C=C(/CO[Si](C)(C)C(C)(C)C)C(=O)O)C1CCC2(C)C3CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)CCC45CC35CCC12C4567.7Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,2TBDMS,isomer #3CC(CC/C=C(/CO)C(=O)O[Si](C)(C)C(C)(C)C)C1CCC2(C)C3CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)CCC45CC35CCC12C4400.5Semi standard non polar33892256
27-Hydroxyisomangiferolic acid,3TBDMS,isomer #1CC(CC/C=C(/CO[Si](C)(C)C(C)(C)C)C(=O)O[Si](C)(C)C(C)(C)C)C1CCC2(C)C3CCC4C(C)(C)C(O[Si](C)(C)C(C)(C)C)CCC45CC35CCC12C4595.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 27-Hydroxyisomangiferolic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-052f-0012900000-a791e328509c821f12562017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 27-Hydroxyisomangiferolic acid GC-MS (3 TMS) - 70eV, Positivesplash10-00di-1011119000-9758143278dc514e911c2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 27-Hydroxyisomangiferolic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 27-Hydroxyisomangiferolic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 10V, Positive-QTOFsplash10-0a4i-0000900000-8c24f11b6046cafaf49d2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 20V, Positive-QTOFsplash10-0a4r-0005900000-b5227b2307ffc877aa842016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 40V, Positive-QTOFsplash10-0a4i-2019700000-052b5af0c615f822a34e2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 10V, Negative-QTOFsplash10-00di-0000900000-db24a78feb89690fb1062016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 20V, Negative-QTOFsplash10-05i3-0001900000-9c6e897b687f237c791b2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 40V, Negative-QTOFsplash10-0007-8005900000-d0a06cd832d6b66bdd8c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 10V, Positive-QTOFsplash10-000i-1902400000-ca6ee32eb9dfe748429a2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 20V, Positive-QTOFsplash10-03e9-3729600000-3e69f2db5ae575b9e72f2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 40V, Positive-QTOFsplash10-03l0-9148100000-a723cd69798f14ed256d2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 10V, Negative-QTOFsplash10-00di-0000900000-c28ab658f937840b72282021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 20V, Negative-QTOFsplash10-0a4i-0003900000-32ce53ad6db413578d062021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 27-Hydroxyisomangiferolic acid 40V, Negative-QTOFsplash10-0002-0109500000-c9ac72c37950e265f8222021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB014890
KNApSAcK IDC00056698
Chemspider ID72390814
KEGG Compound IDC17568
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5283544
PDB IDNot Available
ChEBI ID52971
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.