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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-11 21:29:27 UTC

Update Date

2022-03-07 02:54:53 UTC

HMDB ID

HMDB0036356

Secondary Accession Numbers

HMDB36356

Metabolite Identification

Common Name

[12]-Gingerol

Description

[12]-Gingerol belongs to the class of organic compounds known as gingerols. Gingerols are compounds containing a gingerol moiety, which is structurally characterized by a 4-hydroxy-3-methoxyphenyl group substituted at the C6 carbon atom by a 5-hydroxy-alkane-3-one. [12]-Gingerol has been detected, but not quantified in, gingers (Zingiber officinale) and herbs and spices. This could make [12]-gingerol a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on [12]-Gingerol.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 05061309052D          

 27 27  0  0  0  0            999 V2000
  -11.4315    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7171    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0026    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2881    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5737    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8592    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1447    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4302    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 15 13  1  0  0  0  0
 16 14  2  0  0  0  0
 19 13  1  0  0  0  0
 19 14  1  0  0  0  0
 19 17  2  0  0  0  0
 20 12  1  0  0  0  0
 20 18  1  0  0  0  0
 21 15  1  0  0  0  0
 21 18  1  0  0  0  0
 22 16  1  0  0  0  0
 23 17  1  0  0  0  0
 23 22  2  0  0  0  0
 24 20  1  0  0  0  0
 25 21  2  0  0  0  0
 26 22  1  0  0  0  0
 27  2  1  0  0  0  0
 27 23  1  0  0  0  0
M  END

HMDB0036356
     RDKit          3D
[12]-Gingerol
 65 65  0  0  0  0  0  0  0  0999 V2000
    9.7862    1.6777   -0.2607 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4653    1.3305    0.4367 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3946    2.0489   -0.3180 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9920    1.8064    0.2642 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6752    0.3701    0.2141 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4273   -0.1794    0.7134 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0939    0.1105    0.1535 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6621    1.5171    0.1985 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2704    1.8361   -0.2530 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1076    1.3472    0.4711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2346   -0.0623    0.6429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4936   -0.9064   -0.5396 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5438   -1.0033   -1.4422 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7788   -0.6448   -1.2768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9708   -0.8510   -0.4005 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7402    0.0783   -0.2993 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2268   -2.0954    0.3138 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4578   -2.2330    1.1033 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7400   -2.1361    0.4183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2697   -3.2433   -0.2225 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4916   -3.1865   -0.8467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2138   -2.0207   -0.8450 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4468   -1.9831   -1.4825 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6898   -0.8838   -0.1971 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4945    0.2106   -0.2600 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1774    1.4403    0.3184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4525   -0.9582    0.4296 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9251    2.7453   -0.4083 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7015    1.1861   -1.2736 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6219    1.1908    0.2901 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5508    1.6913    1.4747 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4096    0.2113    0.3580 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4275    1.7026   -1.3800 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6379    3.1287   -0.3207 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0847    2.1477    1.3304 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3626    2.5212   -0.2495 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8960   -0.0354   -0.8293 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5163   -0.1534    0.8088 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5491   -1.3319    0.7687 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3719    0.0390    1.8514 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0653   -0.2673   -0.9484 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3715   -0.6140    0.6193 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3218    2.0661   -0.5749 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8252    1.9933    1.1943 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2617    1.5911   -1.3570 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2295    2.9838   -0.2472 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2306    1.7500    1.5526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8381    1.9613    0.1894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2796   -0.0138    1.2051 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3590   -0.5640    1.3992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5851   -1.9761   -0.1307 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4074   -1.6677   -2.1417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8562   -1.4051   -2.0867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8418    0.3375   -1.7266 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3628   -2.2009    1.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1163   -3.0070   -0.3182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4288   -3.2086    1.6449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4578   -1.4412    1.9163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6607   -4.1443   -0.1973 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8608   -4.0926   -1.3385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9657   -1.1161   -1.4741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4735    1.2954    1.1469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1404    1.8889    0.6797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7084    2.1422   -0.4314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0907   -0.0665    0.9216 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 24 27  2  0
 27 19  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  0
  3 34  1  0
  4 35  1  0
  4 36  1  0
  5 37  1  0
  5 38  1  0
  6 39  1  0
  6 40  1  0
  7 41  1  0
  7 42  1  0
  8 43  1  0
  8 44  1  0
  9 45  1  0
  9 46  1  0
 10 47  1  0
 10 48  1  0
 11 49  1  0
 11 50  1  0
 12 51  1  0
 13 52  1  0
 14 53  1  0
 14 54  1  0
 17 55  1  0
 17 56  1  0
 18 57  1  0
 18 58  1  0
 20 59  1  0
 21 60  1  0
 23 61  1  0
 26 62  1  0
 26 63  1  0
 26 64  1  0
 27 65  1  0
M  END


  Mrv0541 05061309052D          

 27 27  0  0  0  0            999 V2000
  -11.4315    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7171    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.0026    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.2881    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.5737    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8592    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.1447    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4302    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7158    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145   -0.4125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8579    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.0000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5724    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.1434    2.0625    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434   -0.4125    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  3  1  1  0  0  0  0
  4  3  1  0  0  0  0
  5  4  1  0  0  0  0
  6  5  1  0  0  0  0
  7  6  1  0  0  0  0
  8  7  1  0  0  0  0
  9  8  1  0  0  0  0
 10  9  1  0  0  0  0
 11 10  1  0  0  0  0
 12 11  1  0  0  0  0
 15 13  1  0  0  0  0
 16 14  2  0  0  0  0
 19 13  1  0  0  0  0
 19 14  1  0  0  0  0
 19 17  2  0  0  0  0
 20 12  1  0  0  0  0
 20 18  1  0  0  0  0
 21 15  1  0  0  0  0
 21 18  1  0  0  0  0
 22 16  1  0  0  0  0
 23 17  1  0  0  0  0
 23 22  2  0  0  0  0
 24 20  1  0  0  0  0
 25 21  2  0  0  0  0
 26 22  1  0  0  0  0
 27  2  1  0  0  0  0
 27 23  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0036356

> <DATABASE_NAME>
hmdb

> <SMILES>
CCCCCCCCCCCC(O)CC(=O)CCC1=CC(OC)=C(O)C=C1

> <INCHI_IDENTIFIER>
InChI=1S/C23H38O4/c1-3-4-5-6-7-8-9-10-11-12-20(24)18-21(25)15-13-19-14-16-22(26)23(17-19)27-2/h14,16-17,20,24,26H,3-13,15,18H2,1-2H3

> <INCHI_KEY>
HQXJXOYLPWCMGL-UHFFFAOYSA-N

> <FORMULA>
C23H38O4

> <MOLECULAR_WEIGHT>
378.5454

> <EXACT_MASS>
378.277009704

> <JCHEM_ACCEPTOR_COUNT>
4

> <JCHEM_AVERAGE_POLARIZABILITY>
46.447780492721975

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
2

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
5-hydroxy-1-(4-hydroxy-3-methoxyphenyl)hexadecan-3-one

> <ALOGPS_LOGP>
6.50

> <JCHEM_LOGP>
6.283931800666666

> <ALOGPS_LOGS>
-5.03

> <JCHEM_MDDR_LIKE_RULE>
0

> <JCHEM_NUMBER_OF_RINGS>
1

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
15.081609827896518

> <JCHEM_PKA_STRONGEST_ACIDIC>
9.945873119685892

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7614722570762487

> <JCHEM_POLAR_SURFACE_AREA>
66.76

> <JCHEM_REFRACTIVITY>
110.71519999999997

> <JCHEM_ROTATABLE_BOND_COUNT>
16

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
3.55e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
5-hydroxy-1-(4-hydroxy-3-methoxyphenyl)hexadecan-3-one

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0036356
     RDKit          3D
[12]-Gingerol
 65 65  0  0  0  0  0  0  0  0999 V2000
    9.7862    1.6777   -0.2607 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4653    1.3305    0.4367 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3946    2.0489   -0.3180 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9920    1.8064    0.2642 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6752    0.3701    0.2141 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4273   -0.1794    0.7134 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0939    0.1105    0.1535 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6621    1.5171    0.1985 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2704    1.8361   -0.2530 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1076    1.3472    0.4711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2346   -0.0623    0.6429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4936   -0.9064   -0.5396 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5438   -1.0033   -1.4422 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7788   -0.6448   -1.2768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9708   -0.8510   -0.4005 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7402    0.0783   -0.2993 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2268   -2.0954    0.3138 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4578   -2.2330    1.1033 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7400   -2.1361    0.4183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2697   -3.2433   -0.2225 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4916   -3.1865   -0.8467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2138   -2.0207   -0.8450 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4468   -1.9831   -1.4825 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6898   -0.8838   -0.1971 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4945    0.2106   -0.2600 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1774    1.4403    0.3184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4525   -0.9582    0.4296 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9251    2.7453   -0.4083 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7015    1.1861   -1.2736 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6219    1.1908    0.2901 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5508    1.6913    1.4747 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4096    0.2113    0.3580 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4275    1.7026   -1.3800 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6379    3.1287   -0.3207 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0847    2.1477    1.3304 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3626    2.5212   -0.2495 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8960   -0.0354   -0.8293 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5163   -0.1534    0.8088 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5491   -1.3319    0.7687 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3719    0.0390    1.8514 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0653   -0.2673   -0.9484 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3715   -0.6140    0.6193 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3218    2.0661   -0.5749 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8252    1.9933    1.1943 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2617    1.5911   -1.3570 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2295    2.9838   -0.2472 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2306    1.7500    1.5526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8381    1.9613    0.1894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2796   -0.0138    1.2051 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3590   -0.5640    1.3992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5851   -1.9761   -0.1307 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4074   -1.6677   -2.1417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8562   -1.4051   -2.0867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8418    0.3375   -1.7266 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3628   -2.2009    1.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1163   -3.0070   -0.3182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4288   -3.2086    1.6449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4578   -1.4412    1.9163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6607   -4.1443   -0.1973 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8608   -4.0926   -1.3385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9657   -1.1161   -1.4741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4735    1.2954    1.1469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1404    1.8889    0.6797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7084    2.1422   -0.4314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0907   -0.0665    0.9216 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 24 27  2  0
 27 19  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  0
  3 34  1  0
  4 35  1  0
  4 36  1  0
  5 37  1  0
  5 38  1  0
  6 39  1  0
  6 40  1  0
  7 41  1  0
  7 42  1  0
  8 43  1  0
  8 44  1  0
  9 45  1  0
  9 46  1  0
 10 47  1  0
 10 48  1  0
 11 49  1  0
 11 50  1  0
 12 51  1  0
 13 52  1  0
 14 53  1  0
 14 54  1  0
 17 55  1  0
 17 56  1  0
 18 57  1  0
 18 58  1  0
 20 59  1  0
 21 60  1  0
 23 61  1  0
 26 62  1  0
 26 63  1  0
 26 64  1  0
 27 65  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0     -21.339   1.540   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0     -20.005   2.310   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0     -18.672   1.540   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0     -17.338   2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0     -16.004   1.540   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0     -14.671   2.310   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0     -13.337   1.540   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0     -12.003   2.310   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0     -10.669   1.540   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0      -9.336   2.310   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0      -8.002   1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       0.000   0.000   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0      -2.667   1.540   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       1.334  -0.770   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0      -5.335   1.540   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       0.000   1.540   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0      -6.668   2.310   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0      -4.001   2.310   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.667   0.000   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   24  O   UNK     0      -6.668   3.850   0.000  0.00  0.00           O+0
HETATM   25  O   UNK     0      -4.001   3.850   0.000  0.00  0.00           O+0
HETATM   26  O   UNK     0       4.001  -0.770   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       4.001   2.310   0.000  0.00  0.00           O+0
CONECT    1    3                                                            
CONECT    2   27                                                            
CONECT    3    1    4                                                       
CONECT    4    3    5                                                       
CONECT    5    4    6                                                       
CONECT    6    5    7                                                       
CONECT    7    6    8                                                       
CONECT    8    7    9                                                       
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12                                                       
CONECT   12   11   20                                                       
CONECT   13   15   19                                                       
CONECT   14   16   19                                                       
CONECT   15   13   21                                                       
CONECT   16   14   22                                                       
CONECT   17   19   23                                                       
CONECT   18   20   21                                                       
CONECT   19   13   14   17                                                  
CONECT   20   12   18   24                                                  
CONECT   21   15   18   25                                                  
CONECT   22   16   23   26                                                  
CONECT   23   17   22   27                                                  
CONECT   24   20                                                            
CONECT   25   21                                                            
CONECT   26   22                                                            
CONECT   27    2   23                                                       
MASTER        0    0    0    0    0    0    0    0   27    0   54    0
END

COMPND    HMDB0036356
HETATM    1  C1  UNL     1       9.786   1.678  -0.261  1.00  0.00           C  
HETATM    2  C2  UNL     1       8.465   1.330   0.437  1.00  0.00           C  
HETATM    3  C3  UNL     1       7.395   2.049  -0.318  1.00  0.00           C  
HETATM    4  C4  UNL     1       5.992   1.806   0.264  1.00  0.00           C  
HETATM    5  C5  UNL     1       5.675   0.370   0.214  1.00  0.00           C  
HETATM    6  C6  UNL     1       4.427  -0.179   0.713  1.00  0.00           C  
HETATM    7  C7  UNL     1       3.094   0.111   0.153  1.00  0.00           C  
HETATM    8  C8  UNL     1       2.662   1.517   0.199  1.00  0.00           C  
HETATM    9  C9  UNL     1       1.270   1.836  -0.253  1.00  0.00           C  
HETATM   10  C10 UNL     1       0.108   1.347   0.471  1.00  0.00           C  
HETATM   11  C11 UNL     1      -0.235  -0.062   0.643  1.00  0.00           C  
HETATM   12  C12 UNL     1      -0.494  -0.906  -0.540  1.00  0.00           C  
HETATM   13  O1  UNL     1       0.544  -1.003  -1.442  1.00  0.00           O  
HETATM   14  C13 UNL     1      -1.779  -0.645  -1.277  1.00  0.00           C  
HETATM   15  C14 UNL     1      -2.971  -0.851  -0.400  1.00  0.00           C  
HETATM   16  O2  UNL     1      -3.740   0.078  -0.299  1.00  0.00           O  
HETATM   17  C15 UNL     1      -3.227  -2.095   0.314  1.00  0.00           C  
HETATM   18  C16 UNL     1      -4.458  -2.233   1.103  1.00  0.00           C  
HETATM   19  C17 UNL     1      -5.740  -2.136   0.418  1.00  0.00           C  
HETATM   20  C18 UNL     1      -6.270  -3.243  -0.222  1.00  0.00           C  
HETATM   21  C19 UNL     1      -7.492  -3.187  -0.847  1.00  0.00           C  
HETATM   22  C20 UNL     1      -8.214  -2.021  -0.845  1.00  0.00           C  
HETATM   23  O3  UNL     1      -9.447  -1.983  -1.483  1.00  0.00           O  
HETATM   24  C21 UNL     1      -7.690  -0.884  -0.197  1.00  0.00           C  
HETATM   25  O4  UNL     1      -8.495   0.211  -0.260  1.00  0.00           O  
HETATM   26  C22 UNL     1      -8.177   1.440   0.318  1.00  0.00           C  
HETATM   27  C23 UNL     1      -6.452  -0.958   0.430  1.00  0.00           C  
HETATM   28  H1  UNL     1       9.925   2.745  -0.408  1.00  0.00           H  
HETATM   29  H2  UNL     1       9.702   1.186  -1.274  1.00  0.00           H  
HETATM   30  H3  UNL     1      10.622   1.191   0.290  1.00  0.00           H  
HETATM   31  H4  UNL     1       8.551   1.691   1.475  1.00  0.00           H  
HETATM   32  H5  UNL     1       8.410   0.211   0.358  1.00  0.00           H  
HETATM   33  H6  UNL     1       7.427   1.703  -1.380  1.00  0.00           H  
HETATM   34  H7  UNL     1       7.638   3.129  -0.321  1.00  0.00           H  
HETATM   35  H8  UNL     1       6.085   2.148   1.330  1.00  0.00           H  
HETATM   36  H9  UNL     1       5.363   2.521  -0.250  1.00  0.00           H  
HETATM   37  H10 UNL     1       5.896  -0.035  -0.829  1.00  0.00           H  
HETATM   38  H11 UNL     1       6.516  -0.153   0.809  1.00  0.00           H  
HETATM   39  H12 UNL     1       4.549  -1.332   0.769  1.00  0.00           H  
HETATM   40  H13 UNL     1       4.372   0.039   1.851  1.00  0.00           H  
HETATM   41  H14 UNL     1       3.065  -0.267  -0.948  1.00  0.00           H  
HETATM   42  H15 UNL     1       2.372  -0.614   0.619  1.00  0.00           H  
HETATM   43  H16 UNL     1       3.322   2.066  -0.575  1.00  0.00           H  
HETATM   44  H17 UNL     1       2.825   1.993   1.194  1.00  0.00           H  
HETATM   45  H18 UNL     1       1.262   1.591  -1.357  1.00  0.00           H  
HETATM   46  H19 UNL     1       1.229   2.984  -0.247  1.00  0.00           H  
HETATM   47  H20 UNL     1       0.231   1.750   1.553  1.00  0.00           H  
HETATM   48  H21 UNL     1      -0.838   1.961   0.189  1.00  0.00           H  
HETATM   49  H22 UNL     1      -1.280  -0.014   1.205  1.00  0.00           H  
HETATM   50  H23 UNL     1       0.359  -0.564   1.399  1.00  0.00           H  
HETATM   51  H24 UNL     1      -0.585  -1.976  -0.131  1.00  0.00           H  
HETATM   52  H25 UNL     1       0.407  -1.668  -2.142  1.00  0.00           H  
HETATM   53  H26 UNL     1      -1.856  -1.405  -2.087  1.00  0.00           H  
HETATM   54  H27 UNL     1      -1.842   0.337  -1.727  1.00  0.00           H  
HETATM   55  H28 UNL     1      -2.363  -2.201   1.049  1.00  0.00           H  
HETATM   56  H29 UNL     1      -3.116  -3.007  -0.318  1.00  0.00           H  
HETATM   57  H30 UNL     1      -4.429  -3.209   1.645  1.00  0.00           H  
HETATM   58  H31 UNL     1      -4.458  -1.441   1.916  1.00  0.00           H  
HETATM   59  H32 UNL     1      -5.661  -4.144  -0.197  1.00  0.00           H  
HETATM   60  H33 UNL     1      -7.861  -4.093  -1.338  1.00  0.00           H  
HETATM   61  H34 UNL     1      -9.966  -1.116  -1.474  1.00  0.00           H  
HETATM   62  H35 UNL     1      -7.473   1.295   1.147  1.00  0.00           H  
HETATM   63  H36 UNL     1      -9.140   1.889   0.680  1.00  0.00           H  
HETATM   64  H37 UNL     1      -7.708   2.142  -0.431  1.00  0.00           H  
HETATM   65  H38 UNL     1      -6.091  -0.067   0.922  1.00  0.00           H  
CONECT    1    2   28   29   30
CONECT    2    3   31   32
CONECT    3    4   33   34
CONECT    4    5   35   36
CONECT    5    6   37   38
CONECT    6    7   39   40
CONECT    7    8   41   42
CONECT    8    9   43   44
CONECT    9   10   45   46
CONECT   10   11   47   48
CONECT   11   12   49   50
CONECT   12   13   14   51
CONECT   13   52
CONECT   14   15   53   54
CONECT   15   16   16   17
CONECT   17   18   55   56
CONECT   18   19   57   58
CONECT   19   20   20   27
CONECT   20   21   59
CONECT   21   22   22   60
CONECT   22   23   24
CONECT   23   61
CONECT   24   25   27   27
CONECT   25   26
CONECT   26   62   63   64
CONECT   27   65
END

HMDB0036356
     RDKit          3D
[12]-Gingerol
 65 65  0  0  0  0  0  0  0  0999 V2000
    9.7862    1.6777   -0.2607 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4653    1.3305    0.4367 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.3946    2.0489   -0.3180 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9920    1.8064    0.2642 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6752    0.3701    0.2141 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4273   -0.1794    0.7134 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.0939    0.1105    0.1535 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.6621    1.5171    0.1985 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.2704    1.8361   -0.2530 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.1076    1.3472    0.4711 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.2346   -0.0623    0.6429 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.4936   -0.9064   -0.5396 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.5438   -1.0033   -1.4422 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.7788   -0.6448   -1.2768 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9708   -0.8510   -0.4005 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7402    0.0783   -0.2993 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2268   -2.0954    0.3138 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4578   -2.2330    1.1033 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.7400   -2.1361    0.4183 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.2697   -3.2433   -0.2225 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4916   -3.1865   -0.8467 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.2138   -2.0207   -0.8450 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.4468   -1.9831   -1.4825 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6898   -0.8838   -0.1971 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4945    0.2106   -0.2600 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.1774    1.4403    0.3184 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.4525   -0.9582    0.4296 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.9251    2.7453   -0.4083 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.7015    1.1861   -1.2736 H   0  0  0  0  0  0  0  0  0  0  0  0
   10.6219    1.1908    0.2901 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5508    1.6913    1.4747 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.4096    0.2113    0.3580 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.4275    1.7026   -1.3800 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6379    3.1287   -0.3207 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.0847    2.1477    1.3304 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.3626    2.5212   -0.2495 H   0  0  0  0  0  0  0  0  0  0  0  0
    5.8960   -0.0354   -0.8293 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.5163   -0.1534    0.8088 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.5491   -1.3319    0.7687 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.3719    0.0390    1.8514 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.0653   -0.2673   -0.9484 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.3715   -0.6140    0.6193 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.3218    2.0661   -0.5749 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8252    1.9933    1.1943 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2617    1.5911   -1.3570 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.2295    2.9838   -0.2472 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.2306    1.7500    1.5526 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8381    1.9613    0.1894 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.2796   -0.0138    1.2051 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.3590   -0.5640    1.3992 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.5851   -1.9761   -0.1307 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.4074   -1.6677   -2.1417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8562   -1.4051   -2.0867 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.8418    0.3375   -1.7266 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.3628   -2.2009    1.0488 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.1163   -3.0070   -0.3182 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4288   -3.2086    1.6449 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4578   -1.4412    1.9163 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6607   -4.1443   -0.1973 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8608   -4.0926   -1.3385 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9657   -1.1161   -1.4741 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.4735    1.2954    1.1469 H   0  0  0  0  0  0  0  0  0  0  0  0
   -9.1404    1.8889    0.6797 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7084    2.1422   -0.4314 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0907   -0.0665    0.9216 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  1  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  1  0
  8  9  1  0
  9 10  1  0
 10 11  1  0
 11 12  1  0
 12 13  1  0
 12 14  1  0
 14 15  1  0
 15 16  2  0
 15 17  1  0
 17 18  1  0
 18 19  1  0
 19 20  2  0
 20 21  1  0
 21 22  2  0
 22 23  1  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 24 27  2  0
 27 19  1  0
  1 28  1  0
  1 29  1  0
  1 30  1  0
  2 31  1  0
  2 32  1  0
  3 33  1  0
  3 34  1  0
  4 35  1  0
  4 36  1  0
  5 37  1  0
  5 38  1  0
  6 39  1  0
  6 40  1  0
  7 41  1  0
  7 42  1  0
  8 43  1  0
  8 44  1  0
  9 45  1  0
  9 46  1  0
 10 47  1  0
 10 48  1  0
 11 49  1  0
 11 50  1  0
 12 51  1  0
 13 52  1  0
 14 53  1  0
 14 54  1  0
 17 55  1  0
 17 56  1  0
 18 57  1  0
 18 58  1  0
 20 59  1  0
 21 60  1  0
 23 61  1  0
 26 62  1  0
 26 63  1  0
 26 64  1  0
 27 65  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Value	Source
5-Hydroxy-1-(4-hydroxy-3-methoxyphenyl)-3-hexadecanone, 9ci	HMDB

Chemical Formula

C₂₃H₃₈O₄

Average Molecular Weight

378.5454

Monoisotopic Molecular Weight

378.277009704

IUPAC Name

5-hydroxy-1-(4-hydroxy-3-methoxyphenyl)hexadecan-3-one

Traditional Name

5-hydroxy-1-(4-hydroxy-3-methoxyphenyl)hexadecan-3-one

CAS Registry Number

104264-55-3

SMILES

CCCCCCCCCCCC(O)CC(=O)CCC1=CC(OC)=C(O)C=C1

InChI Identifier

InChI=1S/C23H38O4/c1-3-4-5-6-7-8-9-10-11-12-20(24)18-21(25)15-13-19-14-16-22(26)23(17-19)27-2/h14,16-17,20,24,26H,3-13,15,18H2,1-2H3

InChI Key

HQXJXOYLPWCMGL-UHFFFAOYSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as gingerols. Gingerols are compounds containing a gingerol moiety, which is structurally characterized by a 4-hydroxy-3-methoxyphenyl group substituted at the C6 carbon atom by a 5-hydroxy-alkane-3-one.

Kingdom

Super Class

Class

Sub Class

Direct Parent

Alternative Parents

Substituents

Gingerol
Fatty alcohol
Phenoxy compound
Anisole
Methoxybenzene
Phenol ether
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Monocyclic benzene moiety
Beta-hydroxy ketone
Fatty acyl
Ketone
Secondary alcohol
Ether
Organic oxide
Hydrocarbon derivative
Carbonyl group
Organic oxygen compound
Alcohol
Organooxygen compound
Aromatic homomonocyclic compound

Molecular Framework

Aromatic homomonocyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cell membrane (HMDB: HMDB0036356)

Cellular substructure

Membrane (HMDB: HMDB0036356)

Route of exposure

Enteral

Ingestion (HMDB: HMDB0036356)

Source

Exogenous

Food

Food (HMDB: HMDB0036356)

Herb and spice

Spice

Ginger (FooDB: FOOD00206)

Herbs and Spices (FooDB: FOOD00866)

Endogenous

Plant

Plant (HMDB: HMDB0036356)

Not Available

Nutrient (HMDB: HMDB0036356)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	0.2 mg/L @ 25 °C (est)	The Good Scents Company Information System
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.0036 g/L	ALOGPS
logP	6.5	ALOGPS
logP	6.28	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	9.95	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	4	ChemAxon
Hydrogen Donor Count	2	ChemAxon
Polar Surface Area	66.76 Å²	ChemAxon
Rotatable Bond Count	16	ChemAxon
Refractivity	110.72 m³·mol⁻¹	ChemAxon
Polarizability	46.45 Å³	ChemAxon
Number of Rings	1	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	No	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DarkChem	[M+H]+	197.045	31661259
DarkChem	[M-H]-	196.956	31661259
DeepCCS	[M+H]+	203.411	30932474
DeepCCS	[M-H]-	200.861	30932474
DeepCCS	[M-2H]-	234.064	30932474
DeepCCS	[M+Na]+	210.514	30932474
AllCCS	[M+H]+	203.0	32859911
AllCCS	[M+H-H2O]+	200.6	32859911
AllCCS	[M+NH4]+	205.3	32859911
AllCCS	[M+Na]+	206.0	32859911
AllCCS	[M-H]-	200.1	32859911
AllCCS	[M+Na-2H]-	202.3	32859911
AllCCS	[M+HCOO]-	204.9	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
[12]-Gingerol	CCCCCCCCCCCC(O)CC(=O)CCC1=CC(OC)=C(O)C=C1	4678.4	Standard polar	33892256
[12]-Gingerol	CCCCCCCCCCCC(O)CC(=O)CCC1=CC(OC)=C(O)C=C1	2913.3	Standard non polar	33892256
[12]-Gingerol	CCCCCCCCCCCC(O)CC(=O)CCC1=CC(OC)=C(O)C=C1	3038.6	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
[12]-Gingerol,1TMS,isomer #1	CCCCCCCCCCCC(CC(=O)CCC1=CC=C(O)C(OC)=C1)O[Si](C)(C)C	2942.8	Semi standard non polar	33892256
[12]-Gingerol,1TMS,isomer #2	CCCCCCCCCCCC(O)CC(=O)CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1	3052.3	Semi standard non polar	33892256
[12]-Gingerol,1TMS,isomer #3	CCCCCCCCCCCC(O)CC(=CCC1=CC=C(O)C(OC)=C1)O[Si](C)(C)C	3166.3	Semi standard non polar	33892256
[12]-Gingerol,1TMS,isomer #4	CCCCCCCCCCCC(O)C=C(CCC1=CC=C(O)C(OC)=C1)O[Si](C)(C)C	3085.1	Semi standard non polar	33892256
[12]-Gingerol,2TMS,isomer #1	CCCCCCCCCCCC(CC(=O)CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C	2961.6	Semi standard non polar	33892256
[12]-Gingerol,2TMS,isomer #2	CCCCCCCCCCCC(CC(=CCC1=CC=C(O)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C	3095.4	Semi standard non polar	33892256
[12]-Gingerol,2TMS,isomer #3	CCCCCCCCCCCC(C=C(CCC1=CC=C(O)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C	3039.7	Semi standard non polar	33892256
[12]-Gingerol,2TMS,isomer #4	CCCCCCCCCCCC(O)CC(=CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C	3171.3	Semi standard non polar	33892256
[12]-Gingerol,2TMS,isomer #5	CCCCCCCCCCCC(O)C=C(CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C	3077.5	Semi standard non polar	33892256
[12]-Gingerol,3TMS,isomer #1	CCCCCCCCCCCC(CC(=CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C	3109.4	Semi standard non polar	33892256
[12]-Gingerol,3TMS,isomer #1	CCCCCCCCCCCC(CC(=CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C	2969.1	Standard non polar	33892256
[12]-Gingerol,3TMS,isomer #2	CCCCCCCCCCCC(C=C(CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C	3029.6	Semi standard non polar	33892256
[12]-Gingerol,3TMS,isomer #2	CCCCCCCCCCCC(C=C(CCC1=CC=C(O[Si](C)(C)C)C(OC)=C1)O[Si](C)(C)C)O[Si](C)(C)C	2912.1	Standard non polar	33892256
[12]-Gingerol,1TBDMS,isomer #1	CCCCCCCCCCCC(CC(=O)CCC1=CC=C(O)C(OC)=C1)O[Si](C)(C)C(C)(C)C	3179.0	Semi standard non polar	33892256
[12]-Gingerol,1TBDMS,isomer #2	CCCCCCCCCCCC(O)CC(=O)CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1	3296.5	Semi standard non polar	33892256
[12]-Gingerol,1TBDMS,isomer #3	CCCCCCCCCCCC(O)CC(=CCC1=CC=C(O)C(OC)=C1)O[Si](C)(C)C(C)(C)C	3407.9	Semi standard non polar	33892256
[12]-Gingerol,1TBDMS,isomer #4	CCCCCCCCCCCC(O)C=C(CCC1=CC=C(O)C(OC)=C1)O[Si](C)(C)C(C)(C)C	3334.4	Semi standard non polar	33892256
[12]-Gingerol,2TBDMS,isomer #1	CCCCCCCCCCCC(CC(=O)CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C	3433.5	Semi standard non polar	33892256
[12]-Gingerol,2TBDMS,isomer #2	CCCCCCCCCCCC(CC(=CCC1=CC=C(O)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3566.9	Semi standard non polar	33892256
[12]-Gingerol,2TBDMS,isomer #3	CCCCCCCCCCCC(C=C(CCC1=CC=C(O)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3532.3	Semi standard non polar	33892256
[12]-Gingerol,2TBDMS,isomer #4	CCCCCCCCCCCC(O)CC(=CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C	3658.5	Semi standard non polar	33892256
[12]-Gingerol,2TBDMS,isomer #5	CCCCCCCCCCCC(O)C=C(CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C	3579.9	Semi standard non polar	33892256
[12]-Gingerol,3TBDMS,isomer #1	CCCCCCCCCCCC(CC(=CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3798.8	Semi standard non polar	33892256
[12]-Gingerol,3TBDMS,isomer #1	CCCCCCCCCCCC(CC(=CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3455.2	Standard non polar	33892256
[12]-Gingerol,3TBDMS,isomer #2	CCCCCCCCCCCC(C=C(CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3765.7	Semi standard non polar	33892256
[12]-Gingerol,3TBDMS,isomer #2	CCCCCCCCCCCC(C=C(CCC1=CC=C(O[Si](C)(C)C(C)(C)C)C(OC)=C1)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C	3395.3	Standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - [12]-Gingerol GC-MS (Non-derivatized) - 70eV, Positive	splash10-004r-3921000000-4b3a5ae3d8d0abfe1e20	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - [12]-Gingerol GC-MS (2 TMS) - 70eV, Positive	splash10-0a4i-9181030000-6f1269f21795e6e46c26	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - [12]-Gingerol GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 10V, Positive-QTOF	splash10-03fr-0209000000-afe72d36419991d18233	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 20V, Positive-QTOF	splash10-01ti-1912000000-d594182d010d93205ca1	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 40V, Positive-QTOF	splash10-000f-4920000000-becce587369370556a9c	2015-04-24	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 10V, Negative-QTOF	splash10-004i-0209000000-8c01a3a0f07af54238b1	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 20V, Negative-QTOF	splash10-004l-0913000000-7bc2a581e8ae340ff0f1	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 40V, Negative-QTOF	splash10-0a6r-3910000000-5b78dca20fbfcbda3d89	2015-04-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 10V, Positive-QTOF	splash10-01t9-0309000000-3bfccc4616549209162f	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 20V, Positive-QTOF	splash10-000m-1966000000-48f3ba27c02da83f88ac	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 40V, Positive-QTOF	splash10-000i-5900000000-f82a224101fdeceaad7b	2021-09-21	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 10V, Negative-QTOF	splash10-0a4i-0009000000-7771a6c1aa6817d3ff7b	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 20V, Negative-QTOF	splash10-0a6u-5926000000-788c833cbcbb4c4db5fc	2021-09-25	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - [12]-Gingerol 40V, Negative-QTOF	splash10-0ab9-7931000000-05051480f94455a74734	2021-09-25	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB015230

KNApSAcK ID

Not Available

Chemspider ID

4476442

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5317599

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

rw1854781

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Showing metabocard for [12]-Gingerol (HMDB0036356)

MOL for HMDB0036356 ([12]-Gingerol)

3D MOL for HMDB0036356 ([12]-Gingerol)

3D SDF for HMDB0036356 ([12]-Gingerol)

3D-SDF for HMDB0036356 ([12]-Gingerol)

PDB for HMDB0036356 ([12]-Gingerol)

3D PDB for HMDB0036356 ([12]-Gingerol)

SMILES for HMDB0036356 ([12]-Gingerol)

INCHI for HMDB0036356 ([12]-Gingerol)

Structure for HMDB0036356 ([12]-Gingerol)

3D Structure for HMDB0036356 ([12]-Gingerol)

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra