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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 00:28:12 UTC
Update Date2022-03-07 02:56:04 UTC
HMDB IDHMDB0039109
Secondary Accession Numbers
  • HMDB39109
Metabolite Identification
Common Name(Z)-1,3-Tridecadiene-5,7,9,11-tetrayne
Description(Z)-1,3-Tridecadiene-5,7,9,11-tetrayne belongs to the class of organic compounds known as enynes. These are hydrocarbons containing an alkene and an alkyne group (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne has been detected, but not quantified in, safflowers (Carthamus tinctorius). This could make (Z)-1,3-tridecadiene-5,7,9,11-tetrayne a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne.
Structure
Data?1563863315
SynonymsNot Available
Chemical FormulaC13H8
Average Molecular Weight164.2026
Monoisotopic Molecular Weight164.062600256
IUPAC Name(3E)-trideca-1,3-dien-5,7,9,11-tetrayne
Traditional Name(3E)-trideca-1,3-dien-5,7,9,11-tetrayne
CAS Registry Number124604-45-1
SMILES
CC#CC#CC#CC#C\C=C\C=C
InChI Identifier
InChI=1S/C13H8/c1-3-5-7-9-11-13-12-10-8-6-4-2/h3,5,7H,1H2,2H3/b7-5+
InChI KeyPXQLZFYDZKYLPY-FNORWQNLSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as enynes. These are hydrocarbons containing an alkene and an alkyne group.
KingdomOrganic compounds
Super ClassHydrocarbons
ClassUnsaturated hydrocarbons
Sub ClassEnynes
Direct ParentEnynes
Alternative Parents
Substituents
  • Enyne
  • Unsaturated aliphatic hydrocarbon
  • Olefin
  • Acyclic olefin
  • Acyclic acetylene
  • Acetylene
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Not AvailableNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility0.82 mg/L @ 25 °C (est)The Good Scents Company Information System
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0084 g/LALOGPS
logP4.42ALOGPS
logP3.92ChemAxon
logS-4.3ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity60.22 m³·mol⁻¹ChemAxon
Polarizability20.87 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+147.41431661259
DarkChem[M-H]-144.78831661259
DeepCCS[M+H]+124.00830932474
DeepCCS[M-H]-120.84230932474
DeepCCS[M-2H]-157.65530932474
DeepCCS[M+Na]+133.02630932474
AllCCS[M+H]+133.232859911
AllCCS[M+H-H2O]+128.932859911
AllCCS[M+NH4]+137.332859911
AllCCS[M+Na]+138.432859911
AllCCS[M-H]-124.932859911
AllCCS[M+Na-2H]-125.532859911
AllCCS[M+HCOO]-126.332859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
(Z)-1,3-Tridecadiene-5,7,9,11-tetrayneCC#CC#CC#CC#C\C=C\C=C2369.1Standard polar33892256
(Z)-1,3-Tridecadiene-5,7,9,11-tetrayneCC#CC#CC#CC#C\C=C\C=C1737.2Standard non polar33892256
(Z)-1,3-Tridecadiene-5,7,9,11-tetrayneCC#CC#CC#CC#C\C=C\C=C1749.2Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne GC-MS (Non-derivatized) - 70eV, Positivesplash10-03di-5900000000-e92872e130d36848044e2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 10V, Positive-QTOFsplash10-014i-0900000000-7cee7dff3d459f9a48242016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 20V, Positive-QTOFsplash10-014i-4900000000-6e139bbfbb71e17290882016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 40V, Positive-QTOFsplash10-0ufs-9200000000-a7cfadec9934278c17af2016-06-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 10V, Negative-QTOFsplash10-03di-0900000000-717095a5b4b680a95ef02016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 20V, Negative-QTOFsplash10-03di-0900000000-883b794de173a66e2e972016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 40V, Negative-QTOFsplash10-03dj-7900000000-6b54b61280055682e5d42016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 10V, Positive-QTOFsplash10-014i-8900000000-fd1cb81caa55bf8023292021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 20V, Positive-QTOFsplash10-01p9-9200000000-8abac09a19dc5b1e29972021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 40V, Positive-QTOFsplash10-00dr-9300000000-66b1d4a384971cd6b8ad2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 10V, Negative-QTOFsplash10-03di-0900000000-99c70a792acb0208cfaf2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 20V, Negative-QTOFsplash10-03di-0900000000-6b88bd206c7c63223c6d2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (Z)-1,3-Tridecadiene-5,7,9,11-tetrayne 40V, Negative-QTOFsplash10-03ki-4900000000-c47d1c7c0d43abc964cb2021-09-23Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB004755
KNApSAcK IDNot Available
Chemspider ID4509556
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5352699
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1874291
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .