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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-12 01:27:26 UTC

Update Date

2022-03-07 02:56:23 UTC

HMDB ID

HMDB0039914

Secondary Accession Numbers

HMDB39914

Metabolite Identification

Common Name

1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone

Description

1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone belongs to the class of organic compounds known as 2-prenylated xanthones. These are organic compounds containing a C5-isoprenoid group linked to a xanthone moiety at the 2-position. Xanthone is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring that carries a ketone group. 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone has been detected, but not quantified in, fruits. This could make 1,6-dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone.

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 05061311292D          

 32 34  0  0  0  0            999 V2000
   -2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1763    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8263    4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  8  7  1  0  0  0  0
 10  9  2  0  0  0  0
 13  1  1  0  0  0  0
 13  2  1  0  0  0  0
 13  7  2  0  0  0  0
 14  8  1  0  0  0  0
 15  9  1  0  0  0  0
 16 11  1  0  0  0  0
 17 12  2  0  0  0  0
 17 14  1  0  0  0  0
 18 11  2  0  0  0  0
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 21 19  2  0  0  0  0
 22 14  2  0  0  0  0
 22 21  1  0  0  0  0
 23 20  1  0  0  0  0
 23 21  1  0  0  0  0
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 24 16  2  0  0  0  0
 25  3  1  0  0  0  0
 25  4  1  0  0  0  0
 25 10  1  0  0  0  0
 26 16  1  0  0  0  0
 27 22  1  0  0  0  0
 28 23  2  0  0  0  0
 29 25  1  0  0  0  0
 30  5  1  0  0  0  0
 30 17  1  0  0  0  0
 31  6  1  0  0  0  0
 31 24  1  0  0  0  0
 32 18  1  0  0  0  0
 32 19  1  0  0  0  0
M  END

HMDB0039914
     RDKit          3D
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-b...
 60 62  0  0  0  0  0  0  0  0999 V2000
    5.2240    2.2043    1.4537 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7361    1.1615    0.6368 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3799    0.9306    0.4270 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5211    1.7934    1.0746 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1496    1.5746    0.8742 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2578    2.3290    1.4368 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0388    2.1681    1.2825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9097    3.0266    1.9292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2561    2.9227    1.8189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1572    3.7723    2.4589 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7482    1.9103    1.0217 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1439    1.8209    0.9087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8356    2.5546   -0.0977 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9695    1.0029    0.3378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4858   -0.1068   -0.4280 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7150   -0.5914   -0.3576 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1304   -1.7581   -1.2215 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4936   -1.7293   -2.5695 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8965   -3.0711   -0.5410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5237   -1.6284   -1.4028 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5766    1.1529    0.4845 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6615    0.3315   -0.1278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9966   -0.6181   -0.8664 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7044    0.5626    0.0820 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6157   -0.2719   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1557   -1.2865   -1.3349 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9755   -0.1085   -0.3857 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0122   -0.9498   -1.0184 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6551   -1.9224   -0.1444 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9654   -1.9763   -0.0158 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9340   -1.1007   -0.7083 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5256   -3.0239    0.9190 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8856    2.0736    2.5172 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8998    3.2090    1.0851 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3313    2.1117    1.4789 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8373    2.5992    1.7055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4941    3.8217    2.5557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7429    4.5058    3.0355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8200    2.0194   -0.2213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0611    3.5683    0.2295 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3160    2.4652   -1.0561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8663   -0.6124   -1.1776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4094   -0.1810    0.3336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5642   -2.3197   -2.5417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3320   -0.7055   -2.9686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2002   -2.2497   -3.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8600   -3.4357   -0.6670 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2034   -3.0115    0.5247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6197   -3.8026   -1.0033 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8423   -2.4038   -1.9466 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7807   -1.9113   -1.7951 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -1.4571   -1.9376 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7847   -0.2018   -1.4005 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0422   -2.6128    0.4113 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6946   -0.0466   -0.7555 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1091   -1.4468   -1.7694 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9339   -1.1602   -0.1898 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2818   -4.0411    0.5454 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1650   -2.8888    1.9479 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6292   -2.9611    0.9535 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
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 17 18  1  0
 17 19  1  0
 17 20  1  0
 14 21  2  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  2  0
 27 28  1  0
 28 29  1  0
 29 30  2  3
 30 31  1  0
 30 32  1  0
 27  3  1  0
 24  5  2  0
 21  7  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
  4 36  1  0
  8 37  1  0
 10 38  1  0
 13 39  1  0
 13 40  1  0
 13 41  1  0
 15 42  1  0
 16 43  1  0
 18 44  1  0
 18 45  1  0
 18 46  1  0
 19 47  1  0
 19 48  1  0
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 29 54  1  0
 31 55  1  0
 31 56  1  0
 31 57  1  0
 32 58  1  0
 32 59  1  0
 32 60  1  0
M  END


  Mrv0541 05061311292D          

 32 34  0  0  0  0            999 V2000
   -2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    5.3625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.1763    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4302    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    3.3000    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    3.7125    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    0.8250    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.2868    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.7145    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    1.2375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.5724    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.1434    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    2.4750    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    2.0625    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.0013    4.5375    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.4289    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    3.3000    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.8263    4.5375    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.0000    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    5.7158    2.4750    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.8579    0.8250    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  8  7  1  0  0  0  0
 10  9  2  0  0  0  0
 13  1  1  0  0  0  0
 13  2  1  0  0  0  0
 13  7  2  0  0  0  0
 14  8  1  0  0  0  0
 15  9  1  0  0  0  0
 16 11  1  0  0  0  0
 17 12  2  0  0  0  0
 17 14  1  0  0  0  0
 18 11  2  0  0  0  0
 19 12  1  0  0  0  0
 20 15  2  0  0  0  0
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 23 20  1  0  0  0  0
 23 21  1  0  0  0  0
 24 15  1  0  0  0  0
 24 16  2  0  0  0  0
 25  3  1  0  0  0  0
 25  4  1  0  0  0  0
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 27 22  1  0  0  0  0
 28 23  2  0  0  0  0
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 30  5  1  0  0  0  0
 30 17  1  0  0  0  0
 31  6  1  0  0  0  0
 31 24  1  0  0  0  0
 32 18  1  0  0  0  0
 32 19  1  0  0  0  0
M  END
> <DATABASE_ID>
HMDB0039914

> <DATABASE_NAME>
hmdb

> <SMILES>
COC1=CC2=C(C(O)=C1CC=C(C)C)C(=O)C1=C(\C=C\C(C)(C)O)C(OC)=C(O)C=C1O2

> <INCHI_IDENTIFIER>
InChI=1S/C25H28O7/c1-13(2)7-8-14-17(30-5)12-19-21(22(14)27)23(28)20-15(9-10-25(3,4)29)24(31-6)16(26)11-18(20)32-19/h7,9-12,26-27,29H,8H2,1-6H3/b10-9+

> <INCHI_KEY>
QXRLQTRFEMAPRP-MDZDMXLPSA-N

> <FORMULA>
C25H28O7

> <MOLECULAR_WEIGHT>
440.4856

> <EXACT_MASS>
440.18350325

> <JCHEM_ACCEPTOR_COUNT>
6

> <JCHEM_AVERAGE_POLARIZABILITY>
48.161825177495714

> <JCHEM_BIOAVAILABILITY>
1

> <JCHEM_DONOR_COUNT>
3

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
1

> <JCHEM_IUPAC>
1,6-dihydroxy-8-[(1E)-3-hydroxy-3-methylbut-1-en-1-yl]-3,7-dimethoxy-2-(3-methylbut-2-en-1-yl)-9H-xanthen-9-one

> <ALOGPS_LOGP>
4.08

> <JCHEM_LOGP>
4.955451643999999

> <ALOGPS_LOGS>
-4.95

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
3

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
9.406266010802485

> <JCHEM_PKA_STRONGEST_ACIDIC>
7.885945762723491

> <JCHEM_PKA_STRONGEST_BASIC>
-2.7951441839092297

> <JCHEM_POLAR_SURFACE_AREA>
105.45000000000002

> <JCHEM_REFRACTIVITY>
124.13879999999995

> <JCHEM_ROTATABLE_BOND_COUNT>
6

> <JCHEM_RULE_OF_FIVE>
1

> <ALOGPS_SOLUBILITY>
4.92e-03 g/l

> <JCHEM_TRADITIONAL_IUPAC>
1,6-dihydroxy-8-[(1E)-3-hydroxy-3-methylbut-1-en-1-yl]-3,7-dimethoxy-2-(3-methylbut-2-en-1-yl)xanthen-9-one

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0039914
     RDKit          3D
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-b...
 60 62  0  0  0  0  0  0  0  0999 V2000
    5.2240    2.2043    1.4537 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7361    1.1615    0.6368 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3799    0.9306    0.4270 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5211    1.7934    1.0746 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1496    1.5746    0.8742 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2578    2.3290    1.4368 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0388    2.1681    1.2825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9097    3.0266    1.9292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2561    2.9227    1.8189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1572    3.7723    2.4589 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7482    1.9103    1.0217 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1439    1.8209    0.9087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8356    2.5546   -0.0977 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9695    1.0029    0.3378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4858   -0.1068   -0.4280 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7150   -0.5914   -0.3576 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1304   -1.7581   -1.2215 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4936   -1.7293   -2.5695 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8965   -3.0711   -0.5410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5237   -1.6284   -1.4028 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5766    1.1529    0.4845 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6615    0.3315   -0.1278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9966   -0.6181   -0.8664 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7044    0.5626    0.0820 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6157   -0.2719   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1557   -1.2865   -1.3349 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9755   -0.1085   -0.3857 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0122   -0.9498   -1.0184 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6551   -1.9224   -0.1444 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9654   -1.9763   -0.0158 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9340   -1.1007   -0.7083 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5256   -3.0239    0.9190 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8856    2.0736    2.5172 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8998    3.2090    1.0851 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3313    2.1117    1.4789 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8373    2.5992    1.7055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4941    3.8217    2.5557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7429    4.5058    3.0355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8200    2.0194   -0.2213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0611    3.5683    0.2295 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3160    2.4652   -1.0561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8663   -0.6124   -1.1776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4094   -0.1810    0.3336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5642   -2.3197   -2.5417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3320   -0.7055   -2.9686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2002   -2.2497   -3.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8600   -3.4357   -0.6670 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2034   -3.0115    0.5247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6197   -3.8026   -1.0033 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8423   -2.4038   -1.9466 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7807   -1.9113   -1.7951 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -1.4571   -1.9376 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7847   -0.2018   -1.4005 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0422   -2.6128    0.4113 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6946   -0.0466   -0.7555 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1091   -1.4468   -1.7694 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9339   -1.1602   -0.1898 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2818   -4.0411    0.5454 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1650   -2.8888    1.9479 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6292   -2.9611    0.9535 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 17 20  1  0
 14 21  2  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  2  0
 27 28  1  0
 28 29  1  0
 29 30  2  3
 30 31  1  0
 30 32  1  0
 27  3  1  0
 24  5  2  0
 21  7  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
  4 36  1  0
  8 37  1  0
 10 38  1  0
 13 39  1  0
 13 40  1  0
 13 41  1  0
 15 42  1  0
 16 43  1  0
 18 44  1  0
 18 45  1  0
 18 46  1  0
 19 47  1  0
 19 48  1  0
 19 49  1  0
 20 50  1  0
 26 51  1  0
 28 52  1  0
 28 53  1  0
 29 54  1  0
 31 55  1  0
 31 56  1  0
 31 57  1  0
 32 58  1  0
 32 59  1  0
 32 60  1  0
M  END

HEADER    PROTEIN                                 06-MAY-13   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   06-MAY-13         0                                  
HETATM    1  C   UNK     0      -4.001   3.850   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      -2.667   6.160   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.336  10.010   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0       7.796   8.470   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0      -1.334   2.310   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0      12.003   3.850   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0      -1.334   3.850   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       0.000   4.620   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       8.002   6.160   0.000  0.00  0.00           C+0
HETATM   10  C   UNK     0       9.336   6.930   0.000  0.00  0.00           C+0
HETATM   11  C   UNK     0       8.002   1.540   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.667   1.540   0.000  0.00  0.00           C+0
HETATM   13  C   UNK     0      -2.667   4.620   0.000  0.00  0.00           C+0
HETATM   14  C   UNK     0       1.334   3.850   0.000  0.00  0.00           C+0
HETATM   15  C   UNK     0       8.002   4.620   0.000  0.00  0.00           C+0
HETATM   16  C   UNK     0       9.336   2.310   0.000  0.00  0.00           C+0
HETATM   17  C   UNK     0       1.334   2.310   0.000  0.00  0.00           C+0
HETATM   18  C   UNK     0       6.668   2.310   0.000  0.00  0.00           C+0
HETATM   19  C   UNK     0       4.001   2.310   0.000  0.00  0.00           C+0
HETATM   20  C   UNK     0       6.668   3.850   0.000  0.00  0.00           C+0
HETATM   21  C   UNK     0       4.001   3.850   0.000  0.00  0.00           C+0
HETATM   22  C   UNK     0       2.667   4.620   0.000  0.00  0.00           C+0
HETATM   23  C   UNK     0       5.335   4.620   0.000  0.00  0.00           C+0
HETATM   24  C   UNK     0       9.336   3.850   0.000  0.00  0.00           C+0
HETATM   25  C   UNK     0       9.336   8.470   0.000  0.00  0.00           C+0
HETATM   26  O   UNK     0      10.669   1.540   0.000  0.00  0.00           O+0
HETATM   27  O   UNK     0       2.667   6.160   0.000  0.00  0.00           O+0
HETATM   28  O   UNK     0       5.335   6.160   0.000  0.00  0.00           O+0
HETATM   29  O   UNK     0      10.876   8.470   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0       0.000   1.540   0.000  0.00  0.00           O+0
HETATM   31  O   UNK     0      10.669   4.620   0.000  0.00  0.00           O+0
HETATM   32  O   UNK     0       5.335   1.540   0.000  0.00  0.00           O+0
CONECT    1   13                                                            
CONECT    2   13                                                            
CONECT    3   25                                                            
CONECT    4   25                                                            
CONECT    5   30                                                            
CONECT    6   31                                                            
CONECT    7    8   13                                                       
CONECT    8    7   14                                                       
CONECT    9   10   15                                                       
CONECT   10    9   25                                                       
CONECT   11   16   18                                                       
CONECT   12   17   19                                                       
CONECT   13    1    2    7                                                  
CONECT   14    8   17   22                                                  
CONECT   15    9   20   24                                                  
CONECT   16   11   24   26                                                  
CONECT   17   12   14   30                                                  
CONECT   18   11   20   32                                                  
CONECT   19   12   21   32                                                  
CONECT   20   15   18   23                                                  
CONECT   21   19   22   23                                                  
CONECT   22   14   21   27                                                  
CONECT   23   20   21   28                                                  
CONECT   24   15   16   31                                                  
CONECT   25    3    4   10   29                                             
CONECT   26   16                                                            
CONECT   27   22                                                            
CONECT   28   23                                                            
CONECT   29   25                                                            
CONECT   30    5   17                                                       
CONECT   31    6   24                                                       
CONECT   32   18   19                                                       
MASTER        0    0    0    0    0    0    0    0   32    0   68    0
END

COMPND    HMDB0039914
HETATM    1  C1  UNL     1       5.224   2.204   1.454  1.00  0.00           C  
HETATM    2  O1  UNL     1       4.736   1.162   0.637  1.00  0.00           O  
HETATM    3  C2  UNL     1       3.380   0.931   0.427  1.00  0.00           C  
HETATM    4  C3  UNL     1       2.521   1.793   1.075  1.00  0.00           C  
HETATM    5  C4  UNL     1       1.150   1.575   0.874  1.00  0.00           C  
HETATM    6  O2  UNL     1       0.258   2.329   1.437  1.00  0.00           O  
HETATM    7  C5  UNL     1      -1.039   2.168   1.282  1.00  0.00           C  
HETATM    8  C6  UNL     1      -1.910   3.027   1.929  1.00  0.00           C  
HETATM    9  C7  UNL     1      -3.256   2.923   1.819  1.00  0.00           C  
HETATM   10  O3  UNL     1      -4.157   3.772   2.459  1.00  0.00           O  
HETATM   11  C8  UNL     1      -3.748   1.910   1.022  1.00  0.00           C  
HETATM   12  O4  UNL     1      -5.144   1.821   0.909  1.00  0.00           O  
HETATM   13  C9  UNL     1      -5.836   2.555  -0.098  1.00  0.00           C  
HETATM   14  C10 UNL     1      -2.969   1.003   0.338  1.00  0.00           C  
HETATM   15  C11 UNL     1      -3.486  -0.107  -0.428  1.00  0.00           C  
HETATM   16  C12 UNL     1      -4.715  -0.591  -0.358  1.00  0.00           C  
HETATM   17  C13 UNL     1      -5.130  -1.758  -1.221  1.00  0.00           C  
HETATM   18  C14 UNL     1      -4.494  -1.729  -2.569  1.00  0.00           C  
HETATM   19  C15 UNL     1      -4.897  -3.071  -0.541  1.00  0.00           C  
HETATM   20  O5  UNL     1      -6.524  -1.628  -1.403  1.00  0.00           O  
HETATM   21  C16 UNL     1      -1.577   1.153   0.485  1.00  0.00           C  
HETATM   22  C17 UNL     1      -0.661   0.332  -0.128  1.00  0.00           C  
HETATM   23  O6  UNL     1      -0.997  -0.618  -0.866  1.00  0.00           O  
HETATM   24  C18 UNL     1       0.704   0.563   0.082  1.00  0.00           C  
HETATM   25  C19 UNL     1       1.616  -0.272  -0.542  1.00  0.00           C  
HETATM   26  O7  UNL     1       1.156  -1.286  -1.335  1.00  0.00           O  
HETATM   27  C20 UNL     1       2.975  -0.109  -0.386  1.00  0.00           C  
HETATM   28  C21 UNL     1       4.012  -0.950  -1.018  1.00  0.00           C  
HETATM   29  C22 UNL     1       4.655  -1.922  -0.144  1.00  0.00           C  
HETATM   30  C23 UNL     1       5.965  -1.976  -0.016  1.00  0.00           C  
HETATM   31  C24 UNL     1       6.934  -1.101  -0.708  1.00  0.00           C  
HETATM   32  C25 UNL     1       6.526  -3.024   0.919  1.00  0.00           C  
HETATM   33  H1  UNL     1       4.886   2.074   2.517  1.00  0.00           H  
HETATM   34  H2  UNL     1       4.900   3.209   1.085  1.00  0.00           H  
HETATM   35  H3  UNL     1       6.331   2.112   1.479  1.00  0.00           H  
HETATM   36  H4  UNL     1       2.837   2.599   1.705  1.00  0.00           H  
HETATM   37  H5  UNL     1      -1.494   3.822   2.556  1.00  0.00           H  
HETATM   38  H6  UNL     1      -3.743   4.506   3.035  1.00  0.00           H  
HETATM   39  H7  UNL     1      -6.820   2.019  -0.221  1.00  0.00           H  
HETATM   40  H8  UNL     1      -6.061   3.568   0.230  1.00  0.00           H  
HETATM   41  H9  UNL     1      -5.316   2.465  -1.056  1.00  0.00           H  
HETATM   42  H10 UNL     1      -2.866  -0.612  -1.178  1.00  0.00           H  
HETATM   43  H11 UNL     1      -5.409  -0.181   0.334  1.00  0.00           H  
HETATM   44  H12 UNL     1      -3.564  -2.320  -2.542  1.00  0.00           H  
HETATM   45  H13 UNL     1      -4.332  -0.706  -2.969  1.00  0.00           H  
HETATM   46  H14 UNL     1      -5.200  -2.250  -3.278  1.00  0.00           H  
HETATM   47  H15 UNL     1      -3.860  -3.436  -0.667  1.00  0.00           H  
HETATM   48  H16 UNL     1      -5.203  -3.012   0.525  1.00  0.00           H  
HETATM   49  H17 UNL     1      -5.620  -3.803  -1.003  1.00  0.00           H  
HETATM   50  H18 UNL     1      -6.842  -2.404  -1.947  1.00  0.00           H  
HETATM   51  H19 UNL     1       1.781  -1.911  -1.795  1.00  0.00           H  
HETATM   52  H20 UNL     1       3.683  -1.457  -1.938  1.00  0.00           H  
HETATM   53  H21 UNL     1       4.785  -0.202  -1.401  1.00  0.00           H  
HETATM   54  H22 UNL     1       4.042  -2.613   0.411  1.00  0.00           H  
HETATM   55  H23 UNL     1       6.695  -0.047  -0.756  1.00  0.00           H  
HETATM   56  H24 UNL     1       7.109  -1.447  -1.769  1.00  0.00           H  
HETATM   57  H25 UNL     1       7.934  -1.160  -0.190  1.00  0.00           H  
HETATM   58  H26 UNL     1       6.282  -4.041   0.545  1.00  0.00           H  
HETATM   59  H27 UNL     1       6.165  -2.889   1.948  1.00  0.00           H  
HETATM   60  H28 UNL     1       7.629  -2.961   0.954  1.00  0.00           H  
CONECT    1    2   33   34   35
CONECT    2    3
CONECT    3    4    4   27
CONECT    4    5   36
CONECT    5    6   24   24
CONECT    6    7
CONECT    7    8    8   21
CONECT    8    9   37
CONECT    9   10   11   11
CONECT   10   38
CONECT   11   12   14
CONECT   12   13
CONECT   13   39   40   41
CONECT   14   15   21   21
CONECT   15   16   16   42
CONECT   16   17   43
CONECT   17   18   19   20
CONECT   18   44   45   46
CONECT   19   47   48   49
CONECT   20   50
CONECT   21   22
CONECT   22   23   23   24
CONECT   24   25
CONECT   25   26   27   27
CONECT   26   51
CONECT   27   28
CONECT   28   29   52   53
CONECT   29   30   30   54
CONECT   30   31   32
CONECT   31   55   56   57
CONECT   32   58   59   60
END

HMDB0039914
     RDKit          3D
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-b...
 60 62  0  0  0  0  0  0  0  0999 V2000
    5.2240    2.2043    1.4537 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.7361    1.1615    0.6368 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3799    0.9306    0.4270 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.5211    1.7934    1.0746 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1496    1.5746    0.8742 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.2578    2.3290    1.4368 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.0388    2.1681    1.2825 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.9097    3.0266    1.9292 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.2561    2.9227    1.8189 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1572    3.7723    2.4589 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7482    1.9103    1.0217 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1439    1.8209    0.9087 O   0  0  0  0  0  0  0  0  0  0  0  0
   -5.8356    2.5546   -0.0977 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.9695    1.0029    0.3378 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4858   -0.1068   -0.4280 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.7150   -0.5914   -0.3576 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.1304   -1.7581   -1.2215 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.4936   -1.7293   -2.5695 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8965   -3.0711   -0.5410 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.5237   -1.6284   -1.4028 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5766    1.1529    0.4845 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6615    0.3315   -0.1278 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.9966   -0.6181   -0.8664 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.7044    0.5626    0.0820 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.6157   -0.2719   -0.5421 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.1557   -1.2865   -1.3349 O   0  0  0  0  0  0  0  0  0  0  0  0
    2.9755   -0.1085   -0.3857 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0122   -0.9498   -1.0184 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.6551   -1.9224   -0.1444 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.9654   -1.9763   -0.0158 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9340   -1.1007   -0.7083 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.5256   -3.0239    0.9190 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.8856    2.0736    2.5172 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.8998    3.2090    1.0851 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.3313    2.1117    1.4789 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.8373    2.5992    1.7055 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4941    3.8217    2.5557 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.7429    4.5058    3.0355 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8200    2.0194   -0.2213 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.0611    3.5683    0.2295 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3160    2.4652   -1.0561 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8663   -0.6124   -1.1776 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4094   -0.1810    0.3336 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5642   -2.3197   -2.5417 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.3320   -0.7055   -2.9686 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2002   -2.2497   -3.2781 H   0  0  0  0  0  0  0  0  0  0  0  0
   -3.8600   -3.4357   -0.6670 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2034   -3.0115    0.5247 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6197   -3.8026   -1.0033 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.8423   -2.4038   -1.9466 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.7807   -1.9113   -1.7951 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.6829   -1.4571   -1.9376 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7847   -0.2018   -1.4005 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.0422   -2.6128    0.4113 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.6946   -0.0466   -0.7555 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.1091   -1.4468   -1.7694 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.9339   -1.1602   -0.1898 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2818   -4.0411    0.5454 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.1650   -2.8888    1.9479 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.6292   -2.9611    0.9535 H   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0
  2  3  1  0
  3  4  2  0
  4  5  1  0
  5  6  1  0
  6  7  1  0
  7  8  2  0
  8  9  1  0
  9 10  1  0
  9 11  2  0
 11 12  1  0
 12 13  1  0
 11 14  1  0
 14 15  1  0
 15 16  2  0
 16 17  1  0
 17 18  1  0
 17 19  1  0
 17 20  1  0
 14 21  2  0
 21 22  1  0
 22 23  2  0
 22 24  1  0
 24 25  1  0
 25 26  1  0
 25 27  2  0
 27 28  1  0
 28 29  1  0
 29 30  2  3
 30 31  1  0
 30 32  1  0
 27  3  1  0
 24  5  2  0
 21  7  1  0
  1 33  1  0
  1 34  1  0
  1 35  1  0
  4 36  1  0
  8 37  1  0
 10 38  1  0
 13 39  1  0
 13 40  1  0
 13 41  1  0
 15 42  1  0
 16 43  1  0
 18 44  1  0
 18 45  1  0
 18 46  1  0
 19 47  1  0
 19 48  1  0
 19 49  1  0
 20 50  1  0
 26 51  1  0
 28 52  1  0
 28 53  1  0
 29 54  1  0
 31 55  1  0
 31 56  1  0
 31 57  1  0
 32 58  1  0
 32 59  1  0
 32 60  1  0
M  END

View in JSmol View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₂₅H₂₈O₇

Average Molecular Weight

440.4856

Monoisotopic Molecular Weight

440.18350325

IUPAC Name

1,6-dihydroxy-8-[(1E)-3-hydroxy-3-methylbut-1-en-1-yl]-3,7-dimethoxy-2-(3-methylbut-2-en-1-yl)-9H-xanthen-9-one

Traditional Name

1,6-dihydroxy-8-[(1E)-3-hydroxy-3-methylbut-1-en-1-yl]-3,7-dimethoxy-2-(3-methylbut-2-en-1-yl)xanthen-9-one

CAS Registry Number

Not Available

SMILES

COC1=CC2=C(C(O)=C1CC=C(C)C)C(=O)C1=C(\C=C\C(C)(C)O)C(OC)=C(O)C=C1O2

InChI Identifier

InChI=1S/C25H28O7/c1-13(2)7-8-14-17(30-5)12-19-21(22(14)27)23(28)20-15(9-10-25(3,4)29)24(31-6)16(26)11-18(20)32-19/h7,9-12,26-27,29H,8H2,1-6H3/b10-9+

InChI Key

QXRLQTRFEMAPRP-MDZDMXLPSA-N

Chemical Taxonomy

Description

Belongs to the class of organic compounds known as 2-prenylated xanthones. These are organic compounds containing a C5-isoprenoid group linked to a xanthone moiety at the 2-position. Xanthone is a tricyclic compound made up of two benzene rings linearly fused to each other through a pyran ring that carries a ketone group.

Kingdom

Organic compounds

Super Class

Organoheterocyclic compounds

Class

Benzopyrans

Sub Class

1-benzopyrans

Direct Parent

2-prenylated xanthones

Alternative Parents

Substituents

2-prenylated xanthone
Chromone
Anisole
Styrene
1-hydroxy-4-unsubstituted benzenoid
1-hydroxy-2-unsubstituted benzenoid
Alkyl aryl ether
Pyranone
Pyran
Benzenoid
Heteroaromatic compound
Vinylogous acid
Tertiary alcohol
Ether
Oxacycle
Alcohol
Organooxygen compound
Hydrocarbon derivative
Organic oxygen compound
Organic oxide
Aromatic heteropolycyclic compound

Molecular Framework

Aromatic heteropolycyclic compounds

External Descriptors

Not Available

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cellular substructure

Membrane (HMDB: HMDB0039914)
Cell membrane (HMDB: HMDB0039914)

Route of exposure

Enteral

Ingestion (HMDB: HMDB0039914)

Source

Exogenous

Exogenous (HMDB: HMDB0039914)

Food

Food (HMDB: HMDB0039914)

Fruit

Fruits (FooDB: FOOD00871)

Endogenous

Plant

Plant (HMDB: HMDB0039914)

Process

Not Available

Role

Biological role

Nutrient (HMDB: HMDB0039914)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.0049 g/L	ALOGPS
logP	4.08	ALOGPS
logP	4.96	ChemAxon
logS	-5	ALOGPS
pKa (Strongest Acidic)	7.89	ChemAxon
pKa (Strongest Basic)	-2.8	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	6	ChemAxon
Hydrogen Donor Count	3	ChemAxon
Polar Surface Area	105.45 Å²	ChemAxon
Rotatable Bond Count	6	ChemAxon
Refractivity	124.14 m³·mol⁻¹	ChemAxon
Polarizability	48.16 Å³	ChemAxon
Number of Rings	3	ChemAxon
Bioavailability	Yes	ChemAxon
Rule of Five	Yes	ChemAxon
Ghose Filter	Yes	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M+H]+	202.107	30932474
DeepCCS	[M-H]-	199.712	30932474
DeepCCS	[M-2H]-	232.658	30932474
DeepCCS	[M+Na]+	208.109	30932474
AllCCS	[M+H]+	206.2	32859911
AllCCS	[M+H-H2O]+	203.8	32859911
AllCCS	[M+NH4]+	208.5	32859911
AllCCS	[M+Na]+	209.2	32859911
AllCCS	[M-H]-	210.2	32859911
AllCCS	[M+Na-2H]-	210.8	32859911
AllCCS	[M+HCOO]-	211.6	32859911

Predicted Retention Times

Underivatized

Chromatographic Method	Retention Time	Reference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022.	7.92 minutes	32390414
Predicted by Siyang on May 30, 2022	12.6382 minutes	33406817
Predicted by Siyang using ReTip algorithm on June 8, 2022	0.9 minutes	32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid	3059.2 seconds	40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid	191.9 seconds	40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid	196.5 seconds	40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid	145.2 seconds	40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	97.8 seconds	40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid	576.7 seconds	40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid	513.4 seconds	40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)	115.0 seconds	40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid	1221.7 seconds	40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid	527.0 seconds	40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid	1083.9 seconds	40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	391.6 seconds	40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid	352.8 seconds	40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate	193.1 seconds	40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA	272.8 seconds	40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water	8.5 seconds	40023050

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone	COC1=CC2=C(C(O)=C1CC=C(C)C)C(=O)C1=C(\C=C\C(C)(C)O)C(OC)=C(O)C=C1O2	5396.9	Standard polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone	COC1=CC2=C(C(O)=C1CC=C(C)C)C(=O)C1=C(\C=C\C(C)(C)O)C(OC)=C(O)C=C1O2	3533.7	Standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone	COC1=CC2=C(C(O)=C1CC=C(C)C)C(=O)C1=C(\C=C\C(C)(C)O)C(OC)=C(O)C=C1O2	3647.7	Semi standard non polar	33892256

Derivatized

Derivative Name / Structure	SMILES	Kovats RI Value	Column Type	Reference
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,1TMS,isomer #1	COC1=CC2=C(C(O[Si](C)(C)C)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O)C(OC)=C(O)C=C1O2	3425.1	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,1TMS,isomer #2	COC1=CC2=C(C(O)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O[Si](C)(C)C)C(OC)=C(O)C=C1O2	3550.2	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,1TMS,isomer #3	COC1=CC2=C(C(O)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O)C(OC)=C(O[Si](C)(C)C)C=C1O2	3445.4	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,2TMS,isomer #1	COC1=CC2=C(C(O[Si](C)(C)C)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O)C(OC)=C(O[Si](C)(C)C)C=C1O2	3335.6	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,2TMS,isomer #2	COC1=CC2=C(C(O[Si](C)(C)C)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O[Si](C)(C)C)C(OC)=C(O)C=C1O2	3428.2	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,2TMS,isomer #3	COC1=CC2=C(C(O)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O[Si](C)(C)C)C(OC)=C(O[Si](C)(C)C)C=C1O2	3446.3	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,3TMS,isomer #1	COC1=CC2=C(C(O[Si](C)(C)C)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O[Si](C)(C)C)C(OC)=C(O[Si](C)(C)C)C=C1O2	3379.3	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,1TBDMS,isomer #1	COC1=CC2=C(C(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O)C(OC)=C(O)C=C1O2	3655.3	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,1TBDMS,isomer #2	COC1=CC2=C(C(O)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O[Si](C)(C)C(C)(C)C)C(OC)=C(O)C=C1O2	3776.1	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,1TBDMS,isomer #3	COC1=CC2=C(C(O)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O)C(OC)=C(O[Si](C)(C)C(C)(C)C)C=C1O2	3663.4	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,2TBDMS,isomer #1	COC1=CC2=C(C(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O)C(OC)=C(O[Si](C)(C)C(C)(C)C)C=C1O2	3772.0	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,2TBDMS,isomer #2	COC1=CC2=C(C(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O[Si](C)(C)C(C)(C)C)C(OC)=C(O)C=C1O2	3902.1	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,2TBDMS,isomer #3	COC1=CC2=C(C(O)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O[Si](C)(C)C(C)(C)C)C(OC)=C(O[Si](C)(C)C(C)(C)C)C=C1O2	3934.0	Semi standard non polar	33892256
1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone,3TBDMS,isomer #1	COC1=CC2=C(C(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C)C(=O)C1=C(/C=C/C(C)(C)O[Si](C)(C)C(C)(C)C)C(OC)=C(O[Si](C)(C)C(C)(C)C)C=C1O2	4039.8	Semi standard non polar	33892256

Spectra

GC-MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted GC-MS	Predicted GC-MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone GC-MS (Non-derivatized) - 70eV, Positive	splash10-05di-4022900000-5cabd6bf203a237e46e5	2017-09-01	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone GC-MS (3 TMS) - 70eV, Positive	splash10-0006-3000029000-e531c00f20f478792802	2017-10-06	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum
Predicted GC-MS	Predicted GC-MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone GC-MS (Non-derivatized) - 70eV, Positive	Not Available	2021-10-12	Wishart Lab	View Spectrum

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 10V, Positive-QTOF	splash10-00di-0004900000-6174bef3e37284aca248	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 20V, Positive-QTOF	splash10-014i-2009400000-9d509548332eda33ac43	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 40V, Positive-QTOF	splash10-014r-2119200000-6d15ff888c47ea8cbcd5	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 10V, Negative-QTOF	splash10-000i-0000900000-c35ddc1c10562fd97c1a	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 20V, Negative-QTOF	splash10-00dr-0004900000-0f2d7e256dea0ec0a605	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 40V, Negative-QTOF	splash10-000l-2659200000-553c966f921d4761a8b7	2016-08-03	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 10V, Positive-QTOF	splash10-00di-0002900000-0c1d3ee1523044c9046d	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 20V, Positive-QTOF	splash10-014r-0009100000-787398c95aff6877cfd6	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 40V, Positive-QTOF	splash10-0v01-0019000000-f1958369b44994e5749c	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 10V, Negative-QTOF	splash10-00dr-0000900000-2346a5af63f8c0e77f9e	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 20V, Negative-QTOF	splash10-000i-0003900000-a8d3369b2c5a085fa432	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone 40V, Negative-QTOF	splash10-014r-0119300000-bb7da7be55c2791b0062	2021-09-22	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

DrugBank ID

Not Available

Phenol Explorer Compound ID

Not Available

FooDB ID

FDB019576

KNApSAcK ID

C00036324

Chemspider ID

4477598

KEGG Compound ID

Not Available

BioCyc ID

Not Available

BiGG ID

Not Available

Wikipedia Link

Not Available

METLIN ID

Not Available

PubChem Compound

5319262

PDB ID

Not Available

ChEBI ID

Not Available

Food Biomarker Ontology

Not Available

VMH ID

Not Available

MarkerDB ID

Not Available

Good Scents ID

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .

Showing metabocard for 1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone (HMDB0039914)

MOL for HMDB0039914 (1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone)

3D MOL for HMDB0039914 (1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone)

3D SDF for HMDB0039914 (1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone)

3D-SDF for HMDB0039914 (1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone)

PDB for HMDB0039914 (1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone)

3D PDB for HMDB0039914 (1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone)

SMILES for HMDB0039914 (1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone)

INCHI for HMDB0039914 (1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone)

Structure for HMDB0039914 (1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone)

3D Structure for HMDB0039914 (1,6-Dihydroxy-3,7-dimethoxy-2-(3-methyl-2-butenyl)-8-(3-hydroxy-3-methyl-1E-butenyl)-xanthone)

Predicted Collision Cross Sections

Predicted Retention Times

Underivatized

Predicted Kovats Retention Indices

Underivatized

Derivatized

GC-MS Spectra

MS/MS Spectra