Hmdb loader
Survey
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 02:53:40 UTC
Update Date2022-03-07 02:56:56 UTC
HMDB IDHMDB0041229
Secondary Accession Numbers
  • HMDB41229
Metabolite Identification
Common NameMethyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate
DescriptionMethyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate belongs to the class of organic compounds known as eremophilane, 8,9-secoeremophilane and furoeremophilane sesquiterpenoids. These are sesquiterpenoids with a structure based either on the eremophilane skeleton, its 8,9-seco derivative, or the furoeremophilane skeleton. Eremophilanes have been shown to be derived from eudesmanes by migration of the methyl group at C-10 to C-5. Based on a literature review a small amount of articles have been published on Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate.
Structure
Data?1563863639
Synonyms
ValueSource
Methyl (3b,11X)-3-hydroxy-8-oxo-6-eremophilen-12-Oic acidGenerator
Methyl 2-(7-hydroxy-8,8a-dimethyl-3-oxo-3,4,4a,5,6,7,8,8a-octahydronaphthalen-2-yl)propanoic acidHMDB
Chemical FormulaC16H24O4
Average Molecular Weight280.3594
Monoisotopic Molecular Weight280.167459256
IUPAC Namemethyl 2-(7-hydroxy-8,8a-dimethyl-3-oxo-3,4,4a,5,6,7,8,8a-octahydronaphthalen-2-yl)propanoate
Traditional Namemethyl 2-(7-hydroxy-8,8a-dimethyl-3-oxo-4,4a,5,6,7,8-hexahydronaphthalen-2-yl)propanoate
CAS Registry Number64964-00-7
SMILES
COC(=O)C(C)C1=CC2(C)C(C)C(O)CCC2CC1=O
InChI Identifier
InChI=1S/C16H24O4/c1-9(15(19)20-4)12-8-16(3)10(2)13(17)6-5-11(16)7-14(12)18/h8-11,13,17H,5-7H2,1-4H3
InChI KeyIVWXOXMSDQFMDV-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as eremophilane, 8,9-secoeremophilane and furoeremophilane sesquiterpenoids. These are sesquiterpenoids with a structure based either on the eremophilane skeleton, its 8,9-seco derivative, or the furoeremophilane skeleton. Eremophilanes have been shown to be derived from eudesmanes by migration of the methyl group at C-10 to C-5.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassPrenol lipids
Sub ClassSesquiterpenoids
Direct ParentEremophilane, 8,9-secoeremophilane and furoeremophilane sesquiterpenoids
Alternative Parents
Substituents
  • Eremophilane sesquiterpenoid
  • Cyclohexenone
  • Cyclic alcohol
  • Methyl ester
  • Carboxylic acid ester
  • Ketone
  • Secondary alcohol
  • Cyclic ketone
  • Monocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Organooxygen compound
  • Organic oxygen compound
  • Alcohol
  • Carbonyl group
  • Organic oxide
  • Hydrocarbon derivative
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.26 g/LALOGPS
logP1.88ALOGPS
logP1.97ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)19.3ChemAxon
pKa (Strongest Basic)-0.92ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area63.6 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity76.42 m³·mol⁻¹ChemAxon
Polarizability30.78 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+167.93631661259
DarkChem[M-H]-164.73331661259
DeepCCS[M+H]+165.62130932474
DeepCCS[M-H]-163.26330932474
DeepCCS[M-2H]-196.14930932474
DeepCCS[M+Na]+171.71430932474
AllCCS[M+H]+166.632859911
AllCCS[M+H-H2O]+163.332859911
AllCCS[M+NH4]+169.732859911
AllCCS[M+Na]+170.632859911
AllCCS[M-H]-171.932859911
AllCCS[M+Na-2H]-172.332859911
AllCCS[M+HCOO]-172.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oateCOC(=O)C(C)C1=CC2(C)C(C)C(O)CCC2CC1=O3135.8Standard polar33892256
Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oateCOC(=O)C(C)C1=CC2(C)C(C)C(O)CCC2CC1=O1965.1Standard non polar33892256
Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oateCOC(=O)C(C)C1=CC2(C)C(C)C(O)CCC2CC1=O2151.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate,1TMS,isomer #1COC(=O)C(C)C1=CC2(C)C(CCC(O[Si](C)(C)C)C2C)CC1=O2205.6Semi standard non polar33892256
Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate,1TMS,isomer #2COC(=O)C(C)C1=CC2(C)C(C=C1O[Si](C)(C)C)CCC(O)C2C2245.6Semi standard non polar33892256
Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate,2TMS,isomer #1COC(=O)C(C)C1=CC2(C)C(C=C1O[Si](C)(C)C)CCC(O[Si](C)(C)C)C2C2228.3Semi standard non polar33892256
Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate,2TMS,isomer #1COC(=O)C(C)C1=CC2(C)C(C=C1O[Si](C)(C)C)CCC(O[Si](C)(C)C)C2C2176.9Standard non polar33892256
Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate,1TBDMS,isomer #1COC(=O)C(C)C1=CC2(C)C(CCC(O[Si](C)(C)C(C)(C)C)C2C)CC1=O2429.7Semi standard non polar33892256
Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate,1TBDMS,isomer #2COC(=O)C(C)C1=CC2(C)C(C=C1O[Si](C)(C)C(C)(C)C)CCC(O)C2C2494.7Semi standard non polar33892256
Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate,2TBDMS,isomer #1COC(=O)C(C)C1=CC2(C)C(C=C1O[Si](C)(C)C(C)(C)C)CCC(O[Si](C)(C)C(C)(C)C)C2C2658.4Semi standard non polar33892256
Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate,2TBDMS,isomer #1COC(=O)C(C)C1=CC2(C)C(C=C1O[Si](C)(C)C(C)(C)C)CCC(O[Si](C)(C)C(C)(C)C)C2C2579.6Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate GC-MS (Non-derivatized) - 70eV, Positivesplash10-0htj-0590000000-f6b390a0803bc0f932e42017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate GC-MS (1 TMS) - 70eV, Positivesplash10-00di-3195000000-92d8c7388dfcbac174822017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 10V, Positive-QTOFsplash10-03e9-0090000000-cdb98d94ccb7d87a9ae92017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 20V, Positive-QTOFsplash10-0gza-2690000000-04800d5cd927b5a84a622017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 40V, Positive-QTOFsplash10-0f81-9560000000-7c6f32f78ce27f23cc132017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 10V, Negative-QTOFsplash10-004i-0090000000-96499ad6f084a9aaf9ce2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 20V, Negative-QTOFsplash10-004i-2190000000-7ffac8b75ebdc5bb49f82017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 40V, Negative-QTOFsplash10-054o-3930000000-f46698f4a56071759de12017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 10V, Positive-QTOFsplash10-06si-0190000000-9a34b4a9f22ee4a09d642021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 20V, Positive-QTOFsplash10-0udi-1490000000-3c71ecf958038c1470022021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 40V, Positive-QTOFsplash10-0ap0-2910000000-29754c1756d5342f6bb32021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 10V, Negative-QTOFsplash10-004i-0090000000-d01ea360d9802dde35dc2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 20V, Negative-QTOFsplash10-002b-0090000000-68813f6e25f58d5817d62021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Methyl (3b,11x)-3-Hydroxy-8-oxo-6-eremophilen-12-oate 40V, Negative-QTOFsplash10-004l-1950000000-65864418713ee9963fe52021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB021131
KNApSAcK IDNot Available
Chemspider ID35015134
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound85240216
PDB IDNot Available
ChEBI ID174675
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.