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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-13 11:52:31 UTC
Update Date2021-10-13 08:41:42 UTC
HMDB IDHMDB0042002
Secondary Accession Numbers
  • HMDB42002
Metabolite Identification
Common NamePyrene
DescriptionPyrene, also known as beta-pyrene or β-pyrene, belongs to the class of organic compounds known as pyrenes. Pyrenes are compounds containing a pyrene moiety, which consists four fused benzene rings, resulting in a flat aromatic system. Pyrene is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Based on a literature review a significant number of articles have been published on Pyrene.
Structure
Data?1563863721
Synonyms
ValueSource
Benzo[def]phenanthreneChEBI
beta-PyreneChEBI
PyrenChEBI
b-PyreneGenerator
Β-pyreneGenerator
BenzpyreneHMDB
Coal tar pitch volatiles:pyreneHMDB
Pyrene (acd/name 4.0)HMDB
{Benzo[def]phenanthrene}HMDB
Chemical FormulaC16H10
Average Molecular Weight202.2506
Monoisotopic Molecular Weight202.07825032
IUPAC Namepyrene
Traditional Namepyrene
CAS Registry Number129-00-0
SMILES
C1=CC2=C3C(C=CC4=CC=CC(C=C2)=C34)=C1
InChI Identifier
InChI=1S/C16H10/c1-3-11-7-9-13-5-2-6-14-10-8-12(4-1)15(11)16(13)14/h1-10H
InChI KeyBBEAQIROQSPTKN-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pyrenes. Pyrenes are compounds containing a pyrene moiety, which consists four fused benzene rings, resulting in a flat aromatic system.
KingdomOrganic compounds
Super ClassBenzenoids
ClassPyrenes
Sub ClassNot Available
Direct ParentPyrenes
Alternative Parents
Substituents
  • Pyrene
  • Phenanthrene
  • Naphthalene
  • Aromatic hydrocarbon
  • Polycyclic hydrocarbon
  • Unsaturated hydrocarbon
  • Hydrocarbon
  • Aromatic homopolycyclic compound
Molecular FrameworkAromatic homopolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point151.2 °CNot Available
Boiling Point404.00 °C. @ 760.00 mm HgThe Good Scents Company Information System
Water Solubility0.00014 mg/mL at 25 °CNot Available
LogP4.88Not Available
Experimental Chromatographic Properties

Experimental Collision Cross Sections

Adduct TypeData SourceCCS Value (Å2)Reference
[M+H]+Not Available137.971http://allccs.zhulab.cn/database/detail?ID=AllCCS00002028
Predicted Molecular Properties
PropertyValueSource
Water Solubility2.3e-05 g/LALOGPS
logP5.19ALOGPS
logP4.28ChemAxon
logS-6.9ALOGPS
Physiological Charge0ChemAxon
Hydrogen Acceptor Count0ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area0 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity66.72 m³·mol⁻¹ChemAxon
Polarizability22.86 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+141.93931661259
DarkChem[M-H]-142.68831661259
DeepCCS[M-2H]-193.3630932474
DeepCCS[M+Na]+168.74330932474
AllCCS[M+H]+143.832859911
AllCCS[M+H-H2O]+139.532859911
AllCCS[M+NH4]+147.932859911
AllCCS[M+Na]+149.132859911
AllCCS[M-H]-149.232859911
AllCCS[M+Na-2H]-148.132859911
AllCCS[M+HCOO]-147.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
PyreneC1=CC2=C3C(C=CC4=CC=CC(C=C2)=C34)=C13245.0Standard polar33892256
PyreneC1=CC2=C3C(C=CC4=CC=CC(C=C2)=C34)=C12069.5Standard non polar33892256
PyreneC1=CC2=C3C(C=CC4=CC=CC(C=C2)=C34)=C12087.6Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental GC-MSGC-MS Spectrum - Pyrene EI-B (Non-derivatized)splash10-0udi-3490000000-a0f4fc47f1f625d9dda52017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Pyrene EI-B (Non-derivatized)splash10-0udi-0390000000-aed9be9c54a99a10a7722017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Pyrene EI-B (Non-derivatized)splash10-0udi-0190000000-ab79745741c952b34e152017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Pyrene EI-B (Non-derivatized)splash10-0udi-1290000000-1f9a049804cf2fb46ba32017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Pyrene CI-B (Non-derivatized)splash10-0udi-0090000000-838134ca9d5c1b6a304a2017-09-12HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Pyrene EI-B (Non-derivatized)splash10-0udi-3490000000-a0f4fc47f1f625d9dda52018-05-18HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Pyrene EI-B (Non-derivatized)splash10-0udi-0390000000-aed9be9c54a99a10a7722018-05-18HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Pyrene EI-B (Non-derivatized)splash10-0udi-0190000000-ab79745741c952b34e152018-05-18HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Pyrene EI-B (Non-derivatized)splash10-0udi-1290000000-1f9a049804cf2fb46ba32018-05-18HMDB team, MONA, MassBankView Spectrum
Experimental GC-MSGC-MS Spectrum - Pyrene CI-B (Non-derivatized)splash10-0udi-0090000000-838134ca9d5c1b6a304a2018-05-18HMDB team, MONA, MassBankView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pyrene GC-MS (Non-derivatized) - 70eV, Positivesplash10-0udi-0090000000-023bdea6eb26657bf7c22017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Pyrene GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
MSMass Spectrum (Electron Ionization)splash10-0udi-0190000000-3f6dbb289af8f6c988fb2014-09-20Not AvailableView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 10V, Positive-QTOFsplash10-0udi-0090000000-8a4ffb969c6480f4a0f92016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 20V, Positive-QTOFsplash10-0udi-0090000000-8a4ffb969c6480f4a0f92016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 40V, Positive-QTOFsplash10-0udi-0190000000-cf9d9c3c3318712878832016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 10V, Negative-QTOFsplash10-0udi-0090000000-e5a45f3b87aa2e8b24042016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 20V, Negative-QTOFsplash10-0udi-0090000000-e5a45f3b87aa2e8b24042016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 40V, Negative-QTOFsplash10-0udi-0090000000-650c1cb3eed690571b3a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 10V, Negative-QTOFsplash10-0udi-0090000000-6aba671a40209155866b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 20V, Negative-QTOFsplash10-0udi-0090000000-6aba671a40209155866b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 40V, Negative-QTOFsplash10-0udi-0090000000-6aba671a40209155866b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 10V, Positive-QTOFsplash10-0udi-0090000000-d631c56cd3c088dbebc42021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 20V, Positive-QTOFsplash10-0udi-0090000000-d631c56cd3c088dbebc42021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Pyrene 40V, Positive-QTOFsplash10-0udi-0090000000-37848fb7edb6a1e2deda2021-09-25Wishart LabView Spectrum

NMR Spectra

Spectrum TypeDescriptionDeposition DateSourceView
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDC00014864
Chemspider ID29153
KEGG Compound IDC14335
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkPyrene
METLIN IDNot Available
PubChem Compound31423
PDB IDNot Available
ChEBI ID39106
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDrw1279441
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Download (PDF)
General ReferencesNot Available