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Record Information
Version5.0
StatusDetected and Quantified
Creation Date2013-05-01 17:30:31 UTC
Update Date2022-09-22 17:44:09 UTC
HMDB IDHMDB0060055
Secondary Accession Numbers
  • HMDB60055
Metabolite Identification
Common NameTetranor 12-HETE
Description12(S)-HETE is a product of arachidonic acid metabolism through the 12-lipoxygenase pathway. It is primarily found in platelets, leukocytes, and to a lesser extent in smooth muscle cells. It enhances tumor cell adhesion to endothelial cells, fibronectin, and the subendothelial matrix. tetranor-12(S)-HETE is the major β-oxidation product resulting from peroxisomal metabolism of 12(S)-HETE in numerous tissues, and Lewis lung carcinoma cells. No biological function has yet been determined for tetranor-12(S)-HETE. Some data indicate it may play a role in controlling the inflammatory response in injured corneas.4 In some diseases (e.g., Zellweger’s Syndrome) peroxisomal abnormalities result in the inability of cells to metabolize 12(S)-HETE, which may be responsible for symptoms of the disease. The tetranor derivative of 12(S)-HETE is available as a research tool for the elucidation of the metabolic fate of its parent compound. (http://www.caymanchem.com)
Structure
Data?1563866010
Synonyms
ValueSource
(4Z,8S,10Z)-8-Hydroxyhexadeca-4,6,10-trienoateGenerator
Chemical FormulaC16H26O3
Average Molecular Weight266.3758
Monoisotopic Molecular Weight266.188194698
IUPAC Name(4Z,6E,8S,10Z)-8-hydroxyhexadeca-4,6,10-trienoic acid
Traditional Name(4Z,6E,8S,10Z)-8-hydroxyhexadeca-4,6,10-trienoic acid
CAS Registry NumberNot Available
SMILES
CCCCC\C=C/C[C@H](O)\C=C\C=C/CCC(O)=O
InChI Identifier
InChI=1S/C16H26O3/c1-2-3-4-5-6-9-12-15(17)13-10-7-8-11-14-16(18)19/h6-10,13,15,17H,2-5,11-12,14H2,1H3,(H,18,19)/b8-7-,9-6-,13-10+/t15-/m0/s1
InChI KeyKBOVKDIBOBQLRS-ONCCEEIJSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as long-chain fatty acids. These are fatty acids with an aliphatic tail that contains between 13 and 21 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentLong-chain fatty acids
Alternative Parents
Substituents
  • Long-chain fatty acid
  • Hydroxy fatty acid
  • Unsaturated fatty acid
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Alcohol
  • Aliphatic acyclic compound
Molecular FrameworkAliphatic acyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.02 g/LALOGPS
logP4.86ALOGPS
logP3.94ChemAxon
logS-4.1ALOGPS
pKa (Strongest Acidic)4.64ChemAxon
pKa (Strongest Basic)-1.6ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count3ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area57.53 ŲChemAxon
Rotatable Bond Count11ChemAxon
Refractivity81.95 m³·mol⁻¹ChemAxon
Polarizability31.64 ųChemAxon
Number of Rings0ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+173.84231661259
DarkChem[M-H]-170.97831661259
DeepCCS[M+H]+174.36330932474
DeepCCS[M-H]-172.00530932474
DeepCCS[M-2H]-204.89130932474
DeepCCS[M+Na]+180.45730932474
AllCCS[M+H]+170.532859911
AllCCS[M+H-H2O]+167.232859911
AllCCS[M+NH4]+173.532859911
AllCCS[M+Na]+174.432859911
AllCCS[M-H]-170.332859911
AllCCS[M+Na-2H]-171.532859911
AllCCS[M+HCOO]-172.932859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022.7.05 minutes32390414
Predicted by Siyang on May 30, 202216.4216 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.09 minutes32390414
Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid2671.8 seconds40023050
Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid340.0 seconds40023050
Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid169.9 seconds40023050
Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid219.6 seconds40023050
RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid428.1 seconds40023050
Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid730.1 seconds40023050
BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid490.0 seconds40023050
HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate)101.3 seconds40023050
UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid1583.9 seconds40023050
BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid550.5 seconds40023050
UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid1406.8 seconds40023050
SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid538.0 seconds40023050
RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid421.0 seconds40023050
MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate348.6 seconds40023050
KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA399.5 seconds40023050
Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water8.1 seconds40023050

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Tetranor 12-HETECCCCC\C=C/C[C@H](O)\C=C\C=C/CCC(O)=O3641.4Standard polar33892256
Tetranor 12-HETECCCCC\C=C/C[C@H](O)\C=C\C=C/CCC(O)=O2104.3Standard non polar33892256
Tetranor 12-HETECCCCC\C=C/C[C@H](O)\C=C\C=C/CCC(O)=O2223.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Tetranor 12-HETE,1TMS,isomer #1CCCCC/C=C\C[C@@H](/C=C/C=C\CCC(=O)O)O[Si](C)(C)C2336.3Semi standard non polar33892256
Tetranor 12-HETE,1TMS,isomer #2CCCCC/C=C\C[C@H](O)/C=C/C=C\CCC(=O)O[Si](C)(C)C2258.6Semi standard non polar33892256
Tetranor 12-HETE,2TMS,isomer #1CCCCC/C=C\C[C@@H](/C=C/C=C\CCC(=O)O[Si](C)(C)C)O[Si](C)(C)C2334.1Semi standard non polar33892256
Tetranor 12-HETE,1TBDMS,isomer #1CCCCC/C=C\C[C@@H](/C=C/C=C\CCC(=O)O)O[Si](C)(C)C(C)(C)C2590.9Semi standard non polar33892256
Tetranor 12-HETE,1TBDMS,isomer #2CCCCC/C=C\C[C@H](O)/C=C/C=C\CCC(=O)O[Si](C)(C)C(C)(C)C2494.5Semi standard non polar33892256
Tetranor 12-HETE,2TBDMS,isomer #1CCCCC/C=C\C[C@@H](/C=C/C=C\CCC(=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C2805.0Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Tetranor 12-HETE GC-MS (Non-derivatized) - 70eV, Positivesplash10-0a4j-4930000000-b2a70aea1a00f43598022017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Tetranor 12-HETE GC-MS (2 TMS) - 70eV, Positivesplash10-00g0-9224000000-32c60c2987341cfc0b092017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Tetranor 12-HETE GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Tetranor 12-HETE GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 10V, Positive-QTOFsplash10-0002-0090000000-8f374bed5d96909bb7b72017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 20V, Positive-QTOFsplash10-000t-6490000000-b8d80acba819222c88952017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 40V, Positive-QTOFsplash10-0fr6-9300000000-85d452033f8ba084a1562017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 10V, Negative-QTOFsplash10-014i-0090000000-5f03823d3028f3da0c482017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 20V, Negative-QTOFsplash10-00kb-0190000000-913d691aab64c36775ba2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 40V, Negative-QTOFsplash10-0a4l-9720000000-0332cdcf1604a119f5a42017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 10V, Positive-QTOFsplash10-0002-1590000000-883acdbaec563f48ea592021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 20V, Positive-QTOFsplash10-0ar0-7910000000-69b222e1f3d29f942d702021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 40V, Positive-QTOFsplash10-0ar0-9300000000-26b1b96aecb6f76ac99a2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 10V, Negative-QTOFsplash10-014i-0090000000-8bbd564c705da51c53332021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 20V, Negative-QTOFsplash10-066s-1490000000-4531abd414815f25e3392021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Tetranor 12-HETE 40V, Negative-QTOFsplash10-0ab9-7910000000-35fdd941a9b2463673522021-10-12Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane (predicted from logP)
Biospecimen Locations
  • Blood
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected and Quantified0.00031 +/- 0.000031 uMAdult (>18 years old)BothNormal details
Abnormal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
UrineDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedCancer patients undergoing total body irradiation details
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound15730832
PDB IDNot Available
ChEBI ID89569
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Quehenberger O, Armando AM, Brown AH, Milne SB, Myers DS, Merrill AH, Bandyopadhyay S, Jones KN, Kelly S, Shaner RL, Sullards CM, Wang E, Murphy RC, Barkley RM, Leiker TJ, Raetz CR, Guan Z, Laird GM, Six DA, Russell DW, McDonald JG, Subramaniam S, Fahy E, Dennis EA: Lipidomics reveals a remarkable diversity of lipids in human plasma. J Lipid Res. 2010 Nov;51(11):3299-305. doi: 10.1194/jlr.M009449. Epub 2010 Jul 29. [PubMed:20671299 ]
  2. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  3. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  4. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  5. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.