| Record Information |
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| Version | 5.0 |
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| Status | Expected but not Quantified |
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| Creation Date | 2013-06-15 18:06:03 UTC |
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| Update Date | 2021-09-14 15:46:00 UTC |
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| HMDB ID | HMDB0060618 |
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| Secondary Accession Numbers | |
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| Metabolite Identification |
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| Common Name | 6-Aminopenicillanic acid |
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| Description | 6-Aminopenicillanic acid, also known as 6-APA or penicin, belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. 6-Aminopenicillanic acid is a very strong basic compound (based on its pKa). 6-Aminopenicillanic acid exists in all living organisms, ranging from bacteria to humans. |
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| Structure | CC1(C)S[C@@H]2[C@H](N)C(=O)N2[C@H]1C(O)=O InChI=1S/C8H12N2O3S/c1-8(2)4(7(12)13)10-5(11)3(9)6(10)14-8/h3-4,6H,9H2,1-2H3,(H,12,13)/t3-,4+,6-/m1/s1 |
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| Synonyms | | Value | Source |
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| (+)-6-Aminopenicillanic acid | ChEBI | | (2S,5R,6R)-6-Amino-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid | ChEBI | | 6-Aminopenicillamine acid | ChEBI | | 6-Aminopenicillanate | ChEBI | | 6-APA | ChEBI | | 6-Aps | ChEBI | | 6beta-Aminopenicillanic acid | ChEBI | | Aminopenicillanic acid | ChEBI | | Penicin | ChEBI | | Penin | ChEBI | | Phenacyl 6-aminopenicillinate | ChEBI | | (+)-6-Aminopenicillanate | Generator | | (2S,5R,6R)-6-Amino-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylate | Generator | | 6b-Aminopenicillanate | Generator | | 6b-Aminopenicillanic acid | Generator | | 6beta-Aminopenicillanate | Generator | | 6Β-aminopenicillanate | Generator | | 6Β-aminopenicillanic acid | Generator | | Aminopenicillanate | Generator | | Phenacyl 6-aminopenicillinic acid | Generator | | 6-APA CPD | HMDB | | Aminopenicillanic acid, potassium salt | HMDB | | Aminopenicillanic acid, sodium salt | HMDB |
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| Chemical Formula | C8H12N2O3S |
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| Average Molecular Weight | 216.257 |
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| Monoisotopic Molecular Weight | 216.05686295 |
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| IUPAC Name | (2S,5R,6R)-6-amino-3,3-dimethyl-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid |
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| Traditional Name | penin |
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| CAS Registry Number | Not Available |
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| SMILES | CC1(C)S[C@@H]2[C@H](N)C(=O)N2[C@H]1C(O)=O |
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| InChI Identifier | InChI=1S/C8H12N2O3S/c1-8(2)4(7(12)13)10-5(11)3(9)6(10)14-8/h3-4,6H,9H2,1-2H3,(H,12,13)/t3-,4+,6-/m1/s1 |
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| InChI Key | NGHVIOIJCVXTGV-ALEPSDHESA-N |
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| Chemical Taxonomy |
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| Description | Belongs to the class of organic compounds known as dipeptides. These are organic compounds containing a sequence of exactly two alpha-amino acids joined by a peptide bond. |
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| Kingdom | Organic compounds |
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| Super Class | Organic acids and derivatives |
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| Class | Carboxylic acids and derivatives |
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| Sub Class | Amino acids, peptides, and analogues |
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| Direct Parent | Dipeptides |
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| Alternative Parents | |
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| Substituents | - Alpha-dipeptide
- Alpha-amino acid or derivatives
- Penam
- Beta-lactam
- Tertiary carboxylic acid amide
- Thiazolidine
- Amino acid or derivatives
- Azetidine
- Amino acid
- Carboxamide group
- Lactam
- Carboxylic acid
- Azacycle
- Monocarboxylic acid or derivatives
- Organoheterocyclic compound
- Dialkylthioether
- Hemithioaminal
- Thioether
- Amine
- Primary aliphatic amine
- Organic nitrogen compound
- Hydrocarbon derivative
- Organonitrogen compound
- Organooxygen compound
- Organic oxygen compound
- Primary amine
- Organopnictogen compound
- Organic oxide
- Carbonyl group
- Aliphatic heteropolycyclic compound
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| Molecular Framework | Aliphatic heteropolycyclic compounds |
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| External Descriptors | |
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| Ontology |
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| Physiological effect | Not Available |
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| Disposition | |
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| Process | Not Available |
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| Role | Not Available |
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| Physical Properties |
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| State | Not Available |
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| Experimental Molecular Properties | | Property | Value | Reference |
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| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
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| Experimental Chromatographic Properties | Not Available |
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| Predicted Molecular Properties | |
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| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
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| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 2.75 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 10.198 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 7.33 minutes | 32390414 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 983.8 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 288.4 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 73.1 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 161.0 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 42.6 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 270.1 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 251.9 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 460.1 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 617.0 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 152.8 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 856.7 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 170.9 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 193.9 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 478.4 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 414.0 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 285.9 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
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| 6-Aminopenicillanic acid,1TMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C | 1850.4 | Semi standard non polar | 33892256 | | 6-Aminopenicillanic acid,1TMS,isomer #2 | CC1(C)S[C@@H]2[C@H](N[Si](C)(C)C)C(=O)N2[C@H]1C(=O)O | 1897.3 | Semi standard non polar | 33892256 | | 6-Aminopenicillanic acid,2TMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N[Si](C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C | 1937.4 | Semi standard non polar | 33892256 | | 6-Aminopenicillanic acid,2TMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N[Si](C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C | 1942.7 | Standard non polar | 33892256 | | 6-Aminopenicillanic acid,2TMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N[Si](C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C | 2490.7 | Standard polar | 33892256 | | 6-Aminopenicillanic acid,2TMS,isomer #2 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C)[Si](C)(C)C)C(=O)N2[C@H]1C(=O)O | 1944.0 | Semi standard non polar | 33892256 | | 6-Aminopenicillanic acid,2TMS,isomer #2 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C)[Si](C)(C)C)C(=O)N2[C@H]1C(=O)O | 2042.0 | Standard non polar | 33892256 | | 6-Aminopenicillanic acid,2TMS,isomer #2 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C)[Si](C)(C)C)C(=O)N2[C@H]1C(=O)O | 2479.8 | Standard polar | 33892256 | | 6-Aminopenicillanic acid,3TMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C)[Si](C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C | 1997.7 | Semi standard non polar | 33892256 | | 6-Aminopenicillanic acid,3TMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C)[Si](C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C | 2116.9 | Standard non polar | 33892256 | | 6-Aminopenicillanic acid,3TMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C)[Si](C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C | 2213.6 | Standard polar | 33892256 | | 6-Aminopenicillanic acid,1TBDMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C(C)(C)C | 2077.2 | Semi standard non polar | 33892256 | | 6-Aminopenicillanic acid,1TBDMS,isomer #2 | CC1(C)S[C@@H]2[C@H](N[Si](C)(C)C(C)(C)C)C(=O)N2[C@H]1C(=O)O | 2110.2 | Semi standard non polar | 33892256 | | 6-Aminopenicillanic acid,2TBDMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N[Si](C)(C)C(C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C(C)(C)C | 2346.3 | Semi standard non polar | 33892256 | | 6-Aminopenicillanic acid,2TBDMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N[Si](C)(C)C(C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C(C)(C)C | 2458.8 | Standard non polar | 33892256 | | 6-Aminopenicillanic acid,2TBDMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N[Si](C)(C)C(C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C(C)(C)C | 2626.3 | Standard polar | 33892256 | | 6-Aminopenicillanic acid,2TBDMS,isomer #2 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C(=O)N2[C@H]1C(=O)O | 2400.5 | Semi standard non polar | 33892256 | | 6-Aminopenicillanic acid,2TBDMS,isomer #2 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C(=O)N2[C@H]1C(=O)O | 2525.3 | Standard non polar | 33892256 | | 6-Aminopenicillanic acid,2TBDMS,isomer #2 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C(=O)N2[C@H]1C(=O)O | 2615.6 | Standard polar | 33892256 | | 6-Aminopenicillanic acid,3TBDMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C(C)(C)C | 2626.8 | Semi standard non polar | 33892256 | | 6-Aminopenicillanic acid,3TBDMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C(C)(C)C | 2799.0 | Standard non polar | 33892256 | | 6-Aminopenicillanic acid,3TBDMS,isomer #1 | CC1(C)S[C@@H]2[C@H](N([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C(=O)N2[C@H]1C(=O)O[Si](C)(C)C(C)(C)C | 2532.1 | Standard polar | 33892256 |
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| General References | - Shimizu T, Souma S, Nagakura N, Masuzawa T, Iwamoto Y, Yanagihara Y: Epitope analysis of aztreonam by antiaztreonam monoclonal antibodies and possible consequences in beta-lactams hypersensitivity. Int Arch Allergy Immunol. 1992;98(4):392-7. [PubMed:1384868 ]
- Zhao Y, Qiao H: Detection of specific IgE antibodies to major and minor antigenic determinants in sera of penicillin allergic patients. Chin Med J (Engl). 2003 Dec;116(12):1904-10. [PubMed:14687482 ]
- Harle DG, Baldo BA: Identification of penicillin allergenic determinants that bind IgE antibodies in the sera of subjects with penicillin allergy. Mol Immunol. 1990 Nov;27(11):1063-71. [PubMed:1701026 ]
- Ariza A, Barrionuevo E, Mayorga C, Montanez MI, Perez-Inestrosa E, Ruiz-Sanchez A, Rodriguez-Gueant RM, Fernandez TD, Gueant JL, Torres MJ, Blanca M: IgE to penicillins with different specificities can be identified by a multiepitope macromolecule: Bihaptenic penicillin structures and IgE specificities. J Immunol Methods. 2014 Apr;406:43-50. doi: 10.1016/j.jim.2014.03.001. Epub 2014 Mar 13. [PubMed:24631718 ]
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