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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-07-09 16:05:06 UTC
Update Date2021-09-14 15:46:16 UTC
HMDB IDHMDB0060883
Secondary Accession Numbers
  • HMDB60883
Metabolite Identification
Common Name7-Hydroxy-R-acenocoumarol
Description7-Hydroxy-R-acenocoumarol belongs to the class of organic compounds known as 7-hydroxycoumarins. These are coumarins that contain one or more hydroxyl groups attached to the C7 position the coumarin skeleton. It is a derivative of coumarin and is marketed under the brand names Sintrom and Sinthrome. 7-Hydroxy-R-acenocoumarol is an extremely weak basic (essentially neutral) compound (based on its pKa). 7-Hydroxy-R-acenocoumarol is a metabolite of acenocoumarol. Acenocoumarol is an anticoagulant that functions as a vitamin K antagonist.
Structure
Data?1563866118
SynonymsNot Available
Chemical FormulaC19H15NO7
Average Molecular Weight369.3249
Monoisotopic Molecular Weight369.084851839
IUPAC Name4,7-dihydroxy-3-[(1S)-1-(4-nitrophenyl)-3-oxobutyl]-2H-chromen-2-one
Traditional Name4,7-dihydroxy-3-[(1S)-1-(4-nitrophenyl)-3-oxobutyl]chromen-2-one
CAS Registry NumberNot Available
SMILES
CC(=O)C[C@@H](C1=CC=C(C=C1)N(=O)=O)C1=C(O)C2=C(OC1=O)C=C(O)C=C2
InChI Identifier
InChI=1S/C19H15NO7/c1-10(21)8-15(11-2-4-12(5-3-11)20(25)26)17-18(23)14-7-6-13(22)9-16(14)27-19(17)24/h2-7,9,15,22-23H,8H2,1H3/t15-/m0/s1
InChI KeyJTCREUDLEYTCAB-HNNXBMFYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as 7-hydroxycoumarins. These are coumarins that contain one or more hydroxyl groups attached to the C7 position the coumarin skeleton.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassCoumarins and derivatives
Sub ClassHydroxycoumarins
Direct Parent7-hydroxycoumarins
Alternative Parents
Substituents
  • 4-hydroxycoumarin
  • 7-hydroxycoumarin
  • Benzopyran
  • 1-benzopyran
  • Nitrobenzene
  • Nitroaromatic compound
  • 1-hydroxy-2-unsubstituted benzenoid
  • Pyranone
  • Monocyclic benzene moiety
  • Pyran
  • Benzenoid
  • Heteroaromatic compound
  • Vinylogous acid
  • Organic nitro compound
  • Ketone
  • Lactone
  • C-nitro compound
  • Propargyl-type 1,3-dipolar organic compound
  • Allyl-type 1,3-dipolar organic compound
  • Organoheterocyclic compound
  • Oxacycle
  • Organic 1,3-dipolar compound
  • Organic oxoazanium
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Organooxygen compound
  • Carbonyl group
  • Organic oxide
  • Organopnictogen compound
  • Organic nitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.023 g/LALOGPS
logP2.76ALOGPS
logP2.38ChemAxon
logS-4.2ALOGPS
pKa (Strongest Acidic)5.93ChemAxon
pKa (Strongest Basic)-6.8ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area129.65 ŲChemAxon
Rotatable Bond Count5ChemAxon
Refractivity96.17 m³·mol⁻¹ChemAxon
Polarizability35.52 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+184.43931661259
DarkChem[M-H]-183.26831661259
DeepCCS[M+H]+186.78830932474
DeepCCS[M-H]-184.39230932474
DeepCCS[M-2H]-217.96930932474
DeepCCS[M+Na]+192.96130932474
AllCCS[M+H]+184.732859911
AllCCS[M+H-H2O]+181.632859911
AllCCS[M+NH4]+187.532859911
AllCCS[M+Na]+188.332859911
AllCCS[M-H]-185.732859911
AllCCS[M+Na-2H]-185.332859911
AllCCS[M+HCOO]-185.132859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
7-Hydroxy-R-acenocoumarolCC(=O)C[C@@H](C1=CC=C(C=C1)N(=O)=O)C1=C(O)C2=C(OC1=O)C=C(O)C=C24565.2Standard polar33892256
7-Hydroxy-R-acenocoumarolCC(=O)C[C@@H](C1=CC=C(C=C1)N(=O)=O)C1=C(O)C2=C(OC1=O)C=C(O)C=C21952.5Standard non polar33892256
7-Hydroxy-R-acenocoumarolCC(=O)C[C@@H](C1=CC=C(C=C1)N(=O)=O)C1=C(O)C2=C(OC1=O)C=C(O)C=C23580.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
7-Hydroxy-R-acenocoumarol,1TMS,isomer #1CC(=O)C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C)C2=CC=C(O)C=C2OC1=O3327.8Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,1TMS,isomer #2CC(=O)C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O)C2=CC=C(O[Si](C)(C)C)C=C2OC1=O3360.8Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,1TMS,isomer #3CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O)C2=CC=C(O)C=C2OC1=O)O[Si](C)(C)C3400.5Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,1TMS,isomer #4C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O)C2=CC=C(O)C=C2OC1=O)O[Si](C)(C)C3386.1Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,2TMS,isomer #1CC(=O)C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C)C2=CC=C(O[Si](C)(C)C)C=C2OC1=O3381.8Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,2TMS,isomer #2CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C)C2=CC=C(O)C=C2OC1=O)O[Si](C)(C)C3344.0Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,2TMS,isomer #3C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C)C2=CC=C(O)C=C2OC1=O)O[Si](C)(C)C3338.2Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,2TMS,isomer #4CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O)C2=CC=C(O[Si](C)(C)C)C=C2OC1=O)O[Si](C)(C)C3430.4Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,2TMS,isomer #5C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O)C2=CC=C(O[Si](C)(C)C)C=C2OC1=O)O[Si](C)(C)C3392.1Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,3TMS,isomer #1CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C)C2=CC=C(O[Si](C)(C)C)C=C2OC1=O)O[Si](C)(C)C3442.8Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,3TMS,isomer #1CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C)C2=CC=C(O[Si](C)(C)C)C=C2OC1=O)O[Si](C)(C)C3253.4Standard non polar33892256
7-Hydroxy-R-acenocoumarol,3TMS,isomer #1CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C)C2=CC=C(O[Si](C)(C)C)C=C2OC1=O)O[Si](C)(C)C3785.4Standard polar33892256
7-Hydroxy-R-acenocoumarol,3TMS,isomer #2C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C)C2=CC=C(O[Si](C)(C)C)C=C2OC1=O)O[Si](C)(C)C3419.1Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,3TMS,isomer #2C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C)C2=CC=C(O[Si](C)(C)C)C=C2OC1=O)O[Si](C)(C)C3092.8Standard non polar33892256
7-Hydroxy-R-acenocoumarol,3TMS,isomer #2C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C)C2=CC=C(O[Si](C)(C)C)C=C2OC1=O)O[Si](C)(C)C3785.3Standard polar33892256
7-Hydroxy-R-acenocoumarol,1TBDMS,isomer #1CC(=O)C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C(C)(C)C)C2=CC=C(O)C=C2OC1=O3588.9Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,1TBDMS,isomer #2CC(=O)C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2OC1=O3622.5Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,1TBDMS,isomer #3CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O)C2=CC=C(O)C=C2OC1=O)O[Si](C)(C)C(C)(C)C3692.5Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,1TBDMS,isomer #4C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O)C2=CC=C(O)C=C2OC1=O)O[Si](C)(C)C(C)(C)C3666.5Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,2TBDMS,isomer #1CC(=O)C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C(C)(C)C)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2OC1=O3879.2Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,2TBDMS,isomer #2CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C(C)(C)C)C2=CC=C(O)C=C2OC1=O)O[Si](C)(C)C(C)(C)C3883.4Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,2TBDMS,isomer #3C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C(C)(C)C)C2=CC=C(O)C=C2OC1=O)O[Si](C)(C)C(C)(C)C3863.6Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,2TBDMS,isomer #4CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2OC1=O)O[Si](C)(C)C(C)(C)C3974.0Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,2TBDMS,isomer #5C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2OC1=O)O[Si](C)(C)C(C)(C)C3920.4Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,3TBDMS,isomer #1CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C(C)(C)C)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2OC1=O)O[Si](C)(C)C(C)(C)C4196.2Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,3TBDMS,isomer #1CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C(C)(C)C)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2OC1=O)O[Si](C)(C)C(C)(C)C3889.4Standard non polar33892256
7-Hydroxy-R-acenocoumarol,3TBDMS,isomer #1CC(=C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C(C)(C)C)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2OC1=O)O[Si](C)(C)C(C)(C)C3922.2Standard polar33892256
7-Hydroxy-R-acenocoumarol,3TBDMS,isomer #2C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C(C)(C)C)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2OC1=O)O[Si](C)(C)C(C)(C)C4157.7Semi standard non polar33892256
7-Hydroxy-R-acenocoumarol,3TBDMS,isomer #2C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C(C)(C)C)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2OC1=O)O[Si](C)(C)C(C)(C)C3701.1Standard non polar33892256
7-Hydroxy-R-acenocoumarol,3TBDMS,isomer #2C=C(C[C@@H](C1=CC=C([N+](=O)[O-])C=C1)C1=C(O[Si](C)(C)C(C)(C)C)C2=CC=C(O[Si](C)(C)C(C)(C)C)C=C2OC1=O)O[Si](C)(C)C(C)(C)C3928.0Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 7-Hydroxy-R-acenocoumarol GC-MS (Non-derivatized) - 70eV, Positivesplash10-03dl-3219000000-da88ab03b39416dbb29b2017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 7-Hydroxy-R-acenocoumarol GC-MS (2 TMS) - 70eV, Positivesplash10-0007-4130900000-fd3b87a52f6024a2836f2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 7-Hydroxy-R-acenocoumarol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy-R-acenocoumarol 10V, Positive-QTOFsplash10-0fk9-0009000000-a7d1a5bfb6eb7eb8c1ca2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy-R-acenocoumarol 20V, Positive-QTOFsplash10-0ul0-0009000000-9a9ec37447fec43d23522017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy-R-acenocoumarol 40V, Positive-QTOFsplash10-00ei-3917000000-18bd160fd57bc55c299e2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy-R-acenocoumarol 10V, Negative-QTOFsplash10-0gb9-0009000000-f0c057dc31a38298f94d2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy-R-acenocoumarol 20V, Negative-QTOFsplash10-00or-1409000000-d8c3784d630852f81cc52017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-Hydroxy-R-acenocoumarol 40V, Negative-QTOFsplash10-0a4i-7913000000-f0e1604a582357b4ce992017-10-06Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Membrane (predicted from logP)
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound54742536
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available