Hmdb loader
Survey
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-07-09 16:10:48 UTC
Update Date2021-09-14 14:57:39 UTC
HMDB IDHMDB0060981
Secondary Accession Numbers
  • HMDB60981
Metabolite Identification
Common Namepara-hydroxyrosiglitazone
Descriptionpara-hydroxyrosiglitazone is a metabolite of rosiglitazone. Rosiglitazone is an antidiabetic drug in the thiazolidinedione class of drugs. It works as an insulin sensitizer, by binding to the PPAR receptors in fat cells and making the cells more responsive to insulin. It is marketed by the pharmaceutical company GlaxoSmithKline (GSK) as a stand-alone drug (Avandia) and in combination with metformin (Avandamet) or with glimepiride (Avandaryl). Annual sales peaked at approximately $2.5bn in 2006, but declined after reports of adverse effects. (Wikipedia)
Structure
Data?1563866130
Synonyms
ValueSource
5-HydroxyrosiglitazoneHMDB
Chemical FormulaC18H19N3O4S
Average Molecular Weight373.426
Monoisotopic Molecular Weight373.109626801
IUPAC Name4-hydroxy-5-[(4-{2-[(5-hydroxypyridin-2-yl)(methyl)amino]ethoxy}phenyl)methyl]-2,5-dihydro-1,3-thiazol-2-one
Traditional Name4-hydroxy-5-[(4-{2-[(5-hydroxypyridin-2-yl)(methyl)amino]ethoxy}phenyl)methyl]-5H-1,3-thiazol-2-one
CAS Registry NumberNot Available
SMILES
CN(CCOC1=CC=C(CC2SC(=O)N=C2O)C=C1)C1=NC=C(O)C=C1
InChI Identifier
InChI=1S/C18H19N3O4S/c1-21(16-7-4-13(22)11-19-16)8-9-25-14-5-2-12(3-6-14)10-15-17(23)20-18(24)26-15/h2-7,11,15,22H,8-10H2,1H3,(H,20,23,24)
InChI KeyAGQGGZNSVNKGDU-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenol ethers. These are aromatic compounds containing an ether group substituted with a benzene ring.
KingdomOrganic compounds
Super ClassBenzenoids
ClassPhenol ethers
Sub ClassNot Available
Direct ParentPhenol ethers
Alternative Parents
Substituents
  • Phenoxy compound
  • Phenol ether
  • Dialkylarylamine
  • Alkyl aryl ether
  • Aminopyridine
  • Hydroxypyridine
  • Thiazolidinedione
  • Monocyclic benzene moiety
  • Pyridine
  • Imidolactam
  • Dicarboximide
  • Heteroaromatic compound
  • Thiazolidine
  • Carbonic acid derivative
  • Thiocarbamic acid derivative
  • Carboxylic acid derivative
  • Ether
  • Azacycle
  • Organoheterocyclic compound
  • Hydrocarbon derivative
  • Organic oxygen compound
  • Organic oxide
  • Organic nitrogen compound
  • Carbonyl group
  • Organonitrogen compound
  • Organooxygen compound
  • Organopnictogen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.13 g/LALOGPS
logP2.69ALOGPS
logP2.38ChemAxon
logS-3.5ALOGPS
pKa (Strongest Acidic)5.72ChemAxon
pKa (Strongest Basic)6.39ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count7ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area95.25 ŲChemAxon
Rotatable Bond Count7ChemAxon
Refractivity100.09 m³·mol⁻¹ChemAxon
Polarizability38.97 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+186.27831661259
DarkChem[M-H]-188.35531661259
DeepCCS[M+H]+187.50930932474
DeepCCS[M-H]-185.09230932474
DeepCCS[M-2H]-219.43530932474
DeepCCS[M+Na]+195.27730932474
AllCCS[M+H]+188.732859911
AllCCS[M+H-H2O]+185.932859911
AllCCS[M+NH4]+191.332859911
AllCCS[M+Na]+192.032859911
AllCCS[M-H]-186.332859911
AllCCS[M+Na-2H]-186.332859911
AllCCS[M+HCOO]-186.432859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
para-hydroxyrosiglitazoneCN(CCOC1=CC=C(CC2SC(=O)N=C2O)C=C1)C1=NC=C(O)C=C14356.9Standard polar33892256
para-hydroxyrosiglitazoneCN(CCOC1=CC=C(CC2SC(=O)N=C2O)C=C1)C1=NC=C(O)C=C13491.9Standard non polar33892256
para-hydroxyrosiglitazoneCN(CCOC1=CC=C(CC2SC(=O)N=C2O)C=C1)C1=NC=C(O)C=C13656.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
para-hydroxyrosiglitazone,1TMS,isomer #1CN(CCOC1=CC=C(CC2SC(=O)N=C2O[Si](C)(C)C)C=C1)C1=CC=C(O)C=N13637.8Semi standard non polar33892256
para-hydroxyrosiglitazone,1TMS,isomer #2CN(CCOC1=CC=C(CC2SC(=O)N=C2O)C=C1)C1=CC=C(O[Si](C)(C)C)C=N13689.8Semi standard non polar33892256
para-hydroxyrosiglitazone,2TMS,isomer #1CN(CCOC1=CC=C(CC2SC(=O)N=C2O[Si](C)(C)C)C=C1)C1=CC=C(O[Si](C)(C)C)C=N13617.7Semi standard non polar33892256
para-hydroxyrosiglitazone,1TBDMS,isomer #1CN(CCOC1=CC=C(CC2SC(=O)N=C2O[Si](C)(C)C(C)(C)C)C=C1)C1=CC=C(O)C=N13892.2Semi standard non polar33892256
para-hydroxyrosiglitazone,1TBDMS,isomer #2CN(CCOC1=CC=C(CC2SC(=O)N=C2O)C=C1)C1=CC=C(O[Si](C)(C)C(C)(C)C)C=N13918.8Semi standard non polar33892256
para-hydroxyrosiglitazone,2TBDMS,isomer #1CN(CCOC1=CC=C(CC2SC(=O)N=C2O[Si](C)(C)C(C)(C)C)C=C1)C1=CC=C(O[Si](C)(C)C(C)(C)C)C=N14004.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - para-hydroxyrosiglitazone GC-MS (Non-derivatized) - 70eV, Positivesplash10-05g0-3942000000-fc10c40b90234178d99d2017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - para-hydroxyrosiglitazone GC-MS (2 TMS) - 70eV, Positivesplash10-0zir-6592050000-8dc5980a48c464d30de12017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - para-hydroxyrosiglitazone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 10V, Positive-QTOFsplash10-00di-0119000000-cfcb5cc55351ac9b428f2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 20V, Positive-QTOFsplash10-0udi-0924000000-3d58818d4a0783fbf5962016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 40V, Positive-QTOFsplash10-0a6r-0910000000-d69e07efbe51090c154b2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 10V, Negative-QTOFsplash10-00di-0329000000-402824245bbf3f868cf72016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 20V, Negative-QTOFsplash10-0uk9-4958000000-1ea7f0acc33233f3e9802016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 40V, Negative-QTOFsplash10-0006-9400000000-ad5f3201e0a83fb6e9462016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 10V, Positive-QTOFsplash10-0uk9-0904000000-a448b41bc3f462e409d42021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 20V, Positive-QTOFsplash10-0udi-0917000000-dfe52a04454c09025f422021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 40V, Positive-QTOFsplash10-000i-1900000000-236c54e7fad831b39cee2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 10V, Negative-QTOFsplash10-00di-0009000000-c160455495ce5cf1fa472021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 20V, Negative-QTOFsplash10-0fdo-4119000000-199103e7183f2597fe542021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - para-hydroxyrosiglitazone 40V, Negative-QTOFsplash10-0006-9100000000-580b3d271ae99a434b7b2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Membrane (predicted from logP)
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound9864316
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available