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Version5.0
StatusExpected but not Quantified
Creation Date2014-04-11 22:16:35 UTC
Update Date2019-07-23 07:16:54 UTC
HMDB IDHMDB0061645
Secondary Accession Numbers
  • HMDB61645
Metabolite Identification
Common Name3,4-Dimethyl-5-pentyl-2-furannonanoic acid
Description3,4-dimethyl-5-pentyl-2-furannonanoic acid is a furan fatty acid (F-acid). F-acids are heterocyclic fatty acids containing a central furan moiety with a carboxylalkyl chain (mostly 7, 9, 11, or 13 carbons) in the 2-position and an alkyl chain (mostly 3 or 5 carbons) in the 5-position. Despite being found in low concentrations in food lipids, they are excellent antixoxidants and radical scavengers. This allows them to play an important role in preventing lipid peroxidation and protecting polyunsaturated fatty acids. They are often incorporated into phospholipids and cholesterol esters of fish and other marine organisms. 3,4-dimethyl-5-pentyl-2-furannonanoic acid, in particular, can be described by the shorthand notation 9D5. This refers to its 9-carbon carboxyalkyl moiety, the dimethyl substitutions in the 3- and 4-positions of its furan moiety, and its 5-carbon alkyl moiety.
Structure
Data?1563866214
Synonyms
ValueSource
3,4-Dimethyl-5-pentyl-2-furannonanoateGenerator
9D5HMDB
DiMe(9,5)HMDB
F3 acidHMDB
9-(3,4-Dimethyl-5-pentyl-2-furyl)nonanoic acidHMDB
10,13-Epoxy-11,12-dimethyl-10,12-octadecadienoic acidHMDB
10,13-Epoxy-11,12-dimethyloctadeca-10,12-dienoic acidHMDB
9-(3,4-Dimethyl-5-pentylfuran-2-yl)nonanoic acidHMDB
3,4-dimethyl-5-pentyl-2-furannonanoic acidSMPDB
9-(3,4-Dimethyl-5-pentylfuran-2-yl)-nonanoateGenerator
Chemical FormulaC20H34O3
Average Molecular Weight322.4822
Monoisotopic Molecular Weight322.250794954
IUPAC Name9-(3,4-dimethyl-5-pentylfuran-2-yl)nonanoic acid
Traditional Name9-(3,4-dimethyl-5-pentylfuran-2-yl)nonanoic acid
CAS Registry Number57818-40-3
SMILES
CCCCCC1=C(C)C(C)=C(CCCCCCCCC(O)=O)O1
InChI Identifier
InChI=1S/C20H34O3/c1-4-5-10-13-18-16(2)17(3)19(23-18)14-11-8-6-7-9-12-15-20(21)22/h4-15H2,1-3H3,(H,21,22)
InChI KeyGGNZKBPHAMNUOU-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as furanoid fatty acids. These are fatty acids containing a 5-alkylfuran-2-alkanoic acid.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acids and conjugates
Direct ParentFuranoid fatty acids
Alternative Parents
Substituents
  • Furanoid fatty acid
  • Medium-chain fatty acid
  • Heteroaromatic compound
  • Furan
  • Oxacycle
  • Organoheterocyclic compound
  • Monocarboxylic acid or derivatives
  • Carboxylic acid
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.003 g/LALOGPS
logP6.35ALOGPS
logP6.71ChemAxon
logS-5ALOGPS
pKa (Strongest Acidic)4.87ChemAxon
pKa (Strongest Basic)-1.1ChemAxon
Physiological Charge-1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area50.44 ŲChemAxon
Rotatable Bond Count13ChemAxon
Refractivity95.68 m³·mol⁻¹ChemAxon
Polarizability41.39 ųChemAxon
Number of Rings1ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+182.64931661259
DarkChem[M-H]-181.55831661259
DeepCCS[M+H]+191.60130932474
DeepCCS[M-H]-189.24330932474
DeepCCS[M-2H]-222.19830932474
DeepCCS[M+Na]+197.88830932474
AllCCS[M+H]+188.632859911
AllCCS[M+H-H2O]+185.832859911
AllCCS[M+NH4]+191.332859911
AllCCS[M+Na]+192.132859911
AllCCS[M-H]-189.132859911
AllCCS[M+Na-2H]-190.732859911
AllCCS[M+HCOO]-192.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
3,4-Dimethyl-5-pentyl-2-furannonanoic acidCCCCCC1=C(C)C(C)=C(CCCCCCCCC(O)=O)O13500.4Standard polar33892256
3,4-Dimethyl-5-pentyl-2-furannonanoic acidCCCCCC1=C(C)C(C)=C(CCCCCCCCC(O)=O)O12337.2Standard non polar33892256
3,4-Dimethyl-5-pentyl-2-furannonanoic acidCCCCCC1=C(C)C(C)=C(CCCCCCCCC(O)=O)O12422.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
3,4-Dimethyl-5-pentyl-2-furannonanoic acid,1TMS,isomer #1CCCCCC1=C(C)C(C)=C(CCCCCCCCC(=O)O[Si](C)(C)C)O12506.6Semi standard non polar33892256
3,4-Dimethyl-5-pentyl-2-furannonanoic acid,1TBDMS,isomer #1CCCCCC1=C(C)C(C)=C(CCCCCCCCC(=O)O[Si](C)(C)C(C)(C)C)O12755.2Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-5390000000-721c0facc48b124eeff02017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid GC-MS (1 TMS) - 70eV, Positivesplash10-004r-9474000000-135fef5ccb5be3d340342017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 10V, Positive-QTOFsplash10-0a4i-0039000000-dd3f71a7c4c3f8cd95672015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 20V, Positive-QTOFsplash10-0a4i-7694000000-1b940e2bd9461254bd632015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 40V, Positive-QTOFsplash10-0aou-9530000000-c6f9e88297860c4116c92015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 10V, Negative-QTOFsplash10-00di-0019000000-8337939689d79537cfea2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 20V, Negative-QTOFsplash10-0fi0-1469000000-dfe28cbf622d735084e12015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 40V, Negative-QTOFsplash10-0ab9-8960000000-65529285e74ce9d24ce02015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 10V, Negative-QTOFsplash10-00di-0009000000-ddd24103f37f0e647bf12021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 20V, Negative-QTOFsplash10-0fk9-0039000000-64169bb84602bbb5981b2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 40V, Negative-QTOFsplash10-002o-2981000000-909eb87d55c8444bd84e2021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 10V, Positive-QTOFsplash10-05g0-0259000000-5513700ce572b582e5542021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 20V, Positive-QTOFsplash10-05dr-3942000000-6d4476128f6c9687f83b2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 3,4-Dimethyl-5-pentyl-2-furannonanoic acid 40V, Positive-QTOFsplash10-0ac3-9400000000-7040cd0fa82a25a3010a2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound13963865
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Spiteller G: Furan fatty acids: occurrence, synthesis, and reactions. Are furan fatty acids responsible for the cardioprotective effects of a fish diet? Lipids. 2005 Aug;40(8):755-71. [PubMed:16296395 ]
  2. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  3. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  4. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  5. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.
  7. The AOCS Lipid Library [Link]