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Human Metabolome Database Version 3.5

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Showing metabocard for Coumarin (HMDB01218)

Record Information
Version 3.5
Creation Date 2005-11-16 08:48:42 -0700
Update Date 2013-02-08 17:10:07 -0700
HMDB ID HMDB01218
Secondary Accession Numbers None
Metabolite Identification
Common Name Coumarin
Description Coumarin is a chemical compound/poison found in many plants, notably in high concentration in the tonka bean, woodruff, and bison grass. It has a sweet scent, readily recognised as the scent of newly-mown hay. It has clinical value as the precursor for several anticoagulants, notably warfarin. --Wikipedia. Coumarins, as a class, are comprised of numerous naturally occurring benzo-alpha-pyrone compounds with important and diverse physiological activities. The parent compound, coumarin, occurs naturally in many plants, natural spices, and foods such as tonka bean, cassia (bastard cinnamon or Chinese cinnamon), cinnamon, melilot (sweet clover), green tea, peppermint, celery, bilberry, lavender, honey (derived both from sweet clover and lavender), and carrots, as well as in beer, tobacco, wine, and other foodstuffs. Coumarin concentrations in these plants, spices, and foods range from <1 mg/kg in celery, 7000 mg/kg in cinnamon, and up to 87,000 mg/kg in cassia. An estimate of human exposure to coumarin from the diet has been calculated to be 0.02 mg/kg/day. Coumarin is used as an additive in perfumes and fragranced consumer products at concentrations ranging from <0.5% to 6.4% in fine fragrances to <0.01% in detergents. An estimate for systemic exposure of humans from the use of fragranced cosmetic products is 0.04 mg/kg BW/day, assuming complete dermal penetration. The use of coumarin as a food additive was banned by the FDA in 1954 based on reports of hepatotoxicity in rats. Due to its potential hepatotoxic effects in humans, the European Commission restricted coumarin from naturals as a direct food additive to 2 mg/kg food/day, with exceptions granting higher levels for alcoholic beverages, caramel, chewing gum, and certain 'traditional foods'. In addition to human exposure to coumarin from dietary sources and consumer products, coumarin is also used clinically as an antineoplastic and for the treatment of lymphedema and venous insufficiency. Exposure ranges from 11 mg/day for consumption of natural food ingredients to 7 g/day following clinical administration. Although adverse effects in humans following coumarin exposure are rare, and only associated with clinical doses, recent evidence indicates coumarin causes liver tumors in rats and mice and Clara cell toxicity and lung tumors in mice. The multiple effects as well as the ongoing human exposure to coumarin have resulted in a significant research effort focused on understanding the mechanism of coumarin induced toxicity/carcinogenicity and its human relevance. These investigations have revealed significant species differences in coumarin metabolism and toxicity such that the mechanism of coumarin induced effects in rodents, and the relevance of these findings for the safety assessment of coumarin exposure in humans are now better understood. In October 2004, the European Food Safety Authority (EFSA, 2004) reviewed coumarin to establish a tolerable daily intake (TDI) in foods. EFSA issued an opinion indicating that coumarin is not genotoxic, and that a threshold approach to safety assessment was most appropriate. EFSA recommended a TDI of 0 to 0.1 mg/kg BW/day. Including dietary contributions, the total human exposure is estimated to be 0.06 mg/kg/day. As a pharmaceutical, coumarin has been used in diverse applications with a wide variety of dosing regimens. Unlike coumadin and other coumarin derivatives, coumarin has no anti-coagulant activity. However, at low doses (typically 7 to 10 mg/day), coumarin has been used as a 'venotonic' to promote vein health and small venule blood flow. Additionally, coumarin has been used clinically in the treatment of high-protein lymphedema of various etiologies. (PMID: 16203076 Link_out).
Structure Thumb
Download: MOL | SDF | SMILES | InChI
Display: 2D Structure | 3D Structure
Synonyms
  1. 1, 2-Benzopyrone
  2. 2-Oxo-1,2-benzopyran
  3. 2-Oxo-2H-1-Benzopyran
  4. 2H-1-Benzopyran-2-one
  5. 2H-Benzo[b]pyran-2-one
  6. 2H-Chromen-2-one
  7. 2H-Chromen-2-one (ACD/Name 4.0)
  8. 5,6-Benzo-2-pyrone
  9. Benzo-a-pyrone
  10. Benzo-alpha-pyrone
  11. cis-O-Coumarinic acid lactone
  12. Coumarin
  13. Coumarine
  14. Coumarinic anhydride
  15. Cumarin
  16. Kumarin
  17. O-Hydroxycinnamic acid lactone
  18. O-Hydroxycinnamic lactone
  19. O-Hydroxyzimtsaure-lacton
  20. Rattex
  21. Tonka bean camphor
  22. {2H-Benzo[b]pyran-2-one}
Chemical Formula C9H6O2
Average Molecular Weight 146.1427
Monoisotopic Molecular Weight 146.036779436
IUPAC Name 2H-chromen-2-one
Traditional IUPAC Name 2H-1-benzopyran-2-one
CAS Registry Number 91-64-5
SMILES O=C1OC2=CC=CC=C2C=C1
InChI Identifier InChI=1S/C9H6O2/c10-9-6-5-7-3-1-2-4-8(7)11-9/h1-6H
InChI Key ZYGHJZDHTFUPRJ-UHFFFAOYSA-N
Chemical Taxonomy
Kingdom Organic Compounds
Super Class Aromatic Heteropolycyclic Compounds
Class Benzopyrans
Sub Class Coumarins and Derivatives
Other Descriptors
  • Benzopyrans
  • Coumarins(KEGG)
  • Phenylpropanoids(KEGG)
  • a coumarin(Cyc)
  • coumarins(ChEBI)
Substituents
  • Pyran
  • Pyranone
Direct Parent Coumarins and Derivatives
Ontology
Status Expected and Not Quantified
Origin
  • Drug
Biofunction Not Available
Application Not Available
Cellular locations
  • Cytoplasm
  • Extracellular
  • Membrane (predicted from logP)
Physical Properties
State Solid
Experimental Properties
Property Value Reference
Melting Point 71 °C Not Available
Boiling Point Not Available Not Available
Water Solubility 1.9 mg/mL Not Available
LogP 2.23 Not Available
Predicted Properties
Property Value Source
LogP 1.72 ALOGPS
LogP 1.78 ChemAxon
LogS -2.16 ALOGPS
pKa (strongest basic) -6.9 ChemAxon
Hydrogen Acceptor Count 1 ChemAxon
Hydrogen Donor Count 0 ChemAxon
Polar Surface Area 26.3 A2 ChemAxon
Rotatable Bond Count 0 ChemAxon
Refractivity 41.55 ChemAxon
Polarizability 14.36 ChemAxon
Formal Charge 0 ChemAxon
Physiological Charge 0 ChemAxon
Spectra
1H NMR Spectrum
MS/MS Spectrum Quattro_QQQ 10
MS/MS Spectrum Quattro_QQQ 25
MS/MS Spectrum Quattro_QQQ 40
MS/MS Spectrum EI-B (HITACHI RMU-7L)
MS/MS Spectrum EI-B (HITACHI RMU-6M)
MS/MS Spectrum EI-B (JEOL JMS-AX-505-H)
MS/MS Spectrum GC-MS
[1H,13C] 2D NMR Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
  • Membrane (predicted from logP)
Biofluid Locations Not Available
Tissue Location Not Available
Pathways Not Available
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease References None
Associated OMIM IDs None
DrugBank ID DB04665 Link_out
Phenol Explorer Compound ID 635 Link_out
Phenol Explorer Metabolite ID Not Available
FoodDB ID FDB011938
KNApSAcK ID Not Available
Chemspider ID 13848793 Link_out
KEGG Compound ID C05851 Link_out
BioCyc ID COUMARIN Link_out
BiGG ID 46647 Link_out
Wikipedia Link Coumarin Link_out
NuGOwiki Link HMDB01218 Link_out
Metagene Link HMDB01218 Link_out
METLIN ID 3525 Link_out
PubChem Compound 323 Link_out
PDB ID COU Link_out
ChEBI ID 28794 Link_out
References
Synthesis Reference Huang, Zhong-jing. Synthesis of coumarin under microwave irradiation. Guangxi Huagong (2001), 30(3), 1-2.
Material Safety Data Sheet (MSDS) Download (PDF)
General References Not Available

Enzymes
Name: Cytochrome P450 2A13
Reactions:
  • RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [RN:R04122]
Gene Name: CYP2A13
Uniprot ID: Q16696 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Cytochrome P450 2A6
Reactions:
  • RH + reduced flavoprotein + O2 = ROH + oxidized flavoprotein + H2O [RN:R04122]
Gene Name: CYP2A6
Uniprot ID: P11509 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA