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Human Metabolome Database Version 3.5

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Showing metabocard for 3-Phenylpropionylglycine (HMDB02042)

Record Information
Version 3.5
Creation Date 2006-05-22 08:17:33 -0600
Update Date 2013-05-31 11:32:01 -0600
HMDB ID HMDB02042
Secondary Accession Numbers None
Metabolite Identification
Common Name 3-Phenylpropionylglycine
Description 3-Phenylpropionylglycine is an acyl glycine. Acyl glycines are normally minor metabolites of fatty acids. However, the excretion of certain acyl glycines is increased in several inborn errors of metabolism. In certain cases the measurement of these metabolites in body fluids can be used to diagnose disorders associated with mitochondrial fatty acid beta-oxidation. Acyl glycines are produced through the action of glycine N-acyltransferase (EC 2.3.1.13) which is an enzyme that catalyzes the chemical reaction:acyl-CoA + glycine < -- > CoA + N-acylglycineUrinary excretion of 3-phenylpropionylglycine is a diagnostic marker for medium-chain acyl-CoA dehydrogenase deficiency. 3-phenylpropionylglycine is derived from 3-phenylpropionic acid, a product of anaerobic bacterial metabolism in the gut. (PMID 1541011 Link_out).
Structure Thumb
Download: MOL | SDF | SMILES | InChI
Display: 2D Structure | 3D Structure
Synonyms
    Chemical Formula C11H13NO3
    Average Molecular Weight 207.2258
    Monoisotopic Molecular Weight 207.089543287
    IUPAC Name 2-[(3-oxo-3-phenylpropyl)amino]acetic acid
    Traditional IUPAC Name [(3-oxo-3-phenylpropyl)amino]acetic acid
    CAS Registry Number 20989-69-9
    SMILES OC(=O)CNCCC(=O)C1=CC=CC=C1
    InChI Identifier InChI=1S/C11H13NO3/c13-10(6-7-12-8-11(14)15)9-4-2-1-3-5-9/h1-5,12H,6-8H2,(H,14,15)
    InChI Key XHSURMJJKAFELI-UHFFFAOYSA-N
    Chemical Taxonomy
    Kingdom Organic Compounds
    Super Class Amino Acids, Peptides, and Analogues
    Class Amino Acids and Derivatives
    Sub Class Alpha Amino Acids and Derivatives
    Other Descriptors
    • Aromatic Homomonocyclic Compounds
    Substituents
    • Acetophenone
    • Benzoyl
    • Beta Aminoketone
    • Carboxylic Acid
    • Ketone
    • Secondary Aliphatic Amine (Dialkylamine)
    Direct Parent Alpha Amino Acids and Derivatives
    Ontology
    Status Expected and Not Quantified
    Origin
    • Endogenous
    • Microbial
    Biofunction Not Available
    Application Not Available
    Cellular locations
    • Membrane (predicted from logP)
    Physical Properties
    State Solid
    Experimental Properties
    Property Value Reference
    Melting Point Not Available Not Available
    Boiling Point Not Available Not Available
    Water Solubility Not Available Not Available
    LogP Not Available Not Available
    Predicted Properties
    Property Value Source
    Water Solubility 0.52 g/L ALOGPS
    LogP -1.34 ALOGPS
    LogP -1.7 ChemAxon
    LogS -2.60 ALOGPS
    pKa (strongest acidic) 1.55 ChemAxon
    pKa (strongest basic) 9.83 ChemAxon
    Hydrogen Acceptor Count 4 ChemAxon
    Hydrogen Donor Count 2 ChemAxon
    Polar Surface Area 66.4 A2 ChemAxon
    Rotatable Bond Count 6 ChemAxon
    Refractivity 55.38 ChemAxon
    Polarizability 21.63 ChemAxon
    Formal Charge 0 ChemAxon
    Physiological Charge 0 ChemAxon
    Spectra
    Not Available
    Biological Properties
    Cellular Locations
    • Membrane (predicted from logP)
    Biofluid Locations Not Available
    Tissue Location Not Available
    Pathways Not Available
    Normal Concentrations
    Not Available
    Abnormal Concentrations
    Not Available
    Associated Disorders and Diseases
    Disease References None
    Associated OMIM IDs None
    DrugBank ID Not Available
    DrugBank Metabolite ID Not Available
    Phenol Explorer Compound ID Not Available
    Phenol Explorer Metabolite ID Not Available
    FoodDB ID FDB022813
    KNApSAcK ID Not Available
    Chemspider ID 1296138 Link_out
    KEGG Compound ID Not Available
    BioCyc ID Not Available
    BiGG ID Not Available
    Wikipedia Link Not Available
    NuGOwiki Link HMDB02042 Link_out
    Metagene Link HMDB02042 Link_out
    METLIN ID 6455 Link_out
    PubChem Compound 1608346 Link_out
    PDB ID Not Available
    ChEBI ID Not Available
    References
    Synthesis Reference Not Available
    Material Safety Data Sheet (MSDS) Not Available
    General References
    1. Rinaldo P, O'Shea JJ, Welch RD, Tanaka K: Stable isotope dilution analysis of n-hexanoylglycine, 3-phenylpropionylglycine and suberylglycine in human urine using chemical ionization gas chromatography/mass spectrometry selected ion monitoring. Biomed Environ Mass Spectrom. 1989 Jul;18(7):471-7. Pubmed: 2775902 Link_out
    2. Rinaldo P, O'Shea JJ, Welch RD, Tanaka K: The enzymatic basis for the dehydrogenation of 3-phenylpropionic acid: in vitro reaction of 3-phenylpropionyl-CoA with various acyl-CoA dehydrogenases. Pediatr Res. 1990 May;27(5):501-7. Pubmed: 2345678 Link_out
    3. Tserng KY, Jin SJ, Kerr DS, Hoppel CL: Abnormal urinary excretion of unsaturated dicarboxylic acids in patients with medium-chain acyl-CoA dehydrogenase deficiency. J Lipid Res. 1990 May;31(5):763-71. Pubmed: 2380628 Link_out
    4. Bennett MJ, Bhala A, Poirier SF, Ragni MC, Willi SM, Hale DE: When do gut flora in the newborn produce 3-phenylpropionic acid? Implications for early diagnosis of medium-chain acyl-CoA dehydrogenase deficiency. Clin Chem. 1992 Feb;38(2):278-81. Pubmed: 1541011 Link_out

    Enzymes
    Name: Glycine N-acyltransferase
    Reactions: Not Available
    Gene Name: GLYAT
    Uniprot ID: Q6IB77 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Glycine N-acyltransferase-like protein 1
    Reactions: Not Available
    Gene Name: GLYATL1
    Uniprot ID: Q969I3 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Glycine N-acyltransferase-like protein 2
    Reactions: Not Available
    Gene Name: GLYATL2
    Uniprot ID: Q8WU03 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Glycine N-acyltransferase-like protein 3
    Reactions: Not Available
    Gene Name: GLYATL3
    Uniprot ID: Q5SZD4 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA