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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-10 21:32:26 UTC
Update Date2021-09-26 22:52:04 UTC
HMDB IDHMDB0244377
Secondary Accession NumbersNone
Metabolite Identification
Common NameFrom Dolabella auricularia (sea hare)
Description110417-88-4 belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond. Based on a literature review very few articles have been published on 110417-88-4. This compound has been identified in human blood as reported by (PMID: 31557052 ). From dolabella auricularia (sea hare) is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically From Dolabella auricularia (sea hare) is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
deo-Dola 10MeSH
deo-Dolastatin 10MeSH
Isodolastatin 10MeSH
2-(Dimethylamino)-N-[1-({3-methoxy-1-[2-(1-methoxy-2-methyl-2-{[2-phenyl-1-(1,3-thiazol-2-yl)ethyl]-C-hydroxycarbonimidoyl}ethyl)pyrrolidin-1-yl]-5-methyl-1-oxoheptan-4-yl}(methyl)carbamoyl)-2-methylpropyl]-3-methylbutanimidateGenerator
Chemical FormulaC42H68N6O6S
Average Molecular Weight785.1
Monoisotopic Molecular Weight784.492105108
IUPAC Name2-(dimethylamino)-N-[1-({3-methoxy-1-[2-(1-methoxy-2-methyl-2-{[2-phenyl-1-(1,3-thiazol-2-yl)ethyl]carbamoyl}ethyl)pyrrolidin-1-yl]-5-methyl-1-oxoheptan-4-yl}(methyl)carbamoyl)-2-methylpropyl]-3-methylbutanamide
Traditional Name2-(dimethylamino)-N-[1-({3-methoxy-1-[2-(1-methoxy-2-methyl-2-{[2-phenyl-1-(1,3-thiazol-2-yl)ethyl]carbamoyl}ethyl)pyrrolidin-1-yl]-5-methyl-1-oxoheptan-4-yl}(methyl)carbamoyl)-2-methylpropyl]-3-methylbutanamide
CAS Registry NumberNot Available
SMILES
CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)NC(CC1=CC=CC=C1)C1=NC=CS1)OC)N(C)C(=O)C(NC(=O)C(C(C)C)N(C)C)C(C)C
InChI Identifier
InChI=1S/C42H68N6O6S/c1-13-28(6)37(47(10)42(52)35(26(2)3)45-40(51)36(27(4)5)46(8)9)33(53-11)25-34(49)48-22-17-20-32(48)38(54-12)29(7)39(50)44-31(41-43-21-23-55-41)24-30-18-15-14-16-19-30/h14-16,18-19,21,23,26-29,31-33,35-38H,13,17,20,22,24-25H2,1-12H3,(H,44,50)(H,45,51)
InChI KeyOFDNQWIFNXBECV-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as hybrid peptides. Hybrid peptides are compounds containing at least two different types of amino acids (alpha, beta, gamma, delta) linked to each other through a peptide bond.
KingdomOrganic compounds
Super ClassOrganic acids and derivatives
ClassPeptidomimetics
Sub ClassHybrid peptides
Direct ParentHybrid peptides
Alternative Parents
Substituents
  • Hybrid peptide
  • Alpha-dipeptide
  • Valine or derivatives
  • N-acyl-alpha amino acid or derivatives
  • Alpha-amino acid amide
  • Alpha-amino acid or derivatives
  • Amphetamine or derivatives
  • N-acylpyrrolidine
  • Monocyclic benzene moiety
  • Fatty amide
  • Fatty acyl
  • Benzenoid
  • N-acyl-amine
  • Thiazole
  • Tertiary carboxylic acid amide
  • Heteroaromatic compound
  • Azole
  • Pyrrolidine
  • Amino acid or derivatives
  • Carboxamide group
  • Tertiary aliphatic amine
  • Tertiary amine
  • Secondary carboxylic acid amide
  • Organoheterocyclic compound
  • Azacycle
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Organic oxygen compound
  • Carbonyl group
  • Hydrocarbon derivative
  • Organic oxide
  • Amine
  • Organic nitrogen compound
  • Organopnictogen compound
  • Organonitrogen compound
  • Organooxygen compound
  • Aromatic heteromonocyclic compound
Molecular FrameworkAromatic heteromonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP4.81ALOGPS
logP5.07ChemAxon
logS-5.8ALOGPS
pKa (Strongest Acidic)12.3ChemAxon
pKa (Strongest Basic)8.03ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area133.41 ŲChemAxon
Rotatable Bond Count21ChemAxon
Refractivity216.86 m³·mol⁻¹ChemAxon
Polarizability87.26 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+271.28530932474
DeepCCS[M-H]-269.4630932474
DeepCCS[M-2H]-302.8330932474
DeepCCS[M+Na]+276.89130932474
AllCCS[M+H]+287.832859911
AllCCS[M+H-H2O]+287.832859911
AllCCS[M+NH4]+287.832859911
AllCCS[M+Na]+287.832859911
AllCCS[M-H]-234.832859911
AllCCS[M+Na-2H]-240.432859911
AllCCS[M+HCOO]-246.632859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Predicted by Siyang on May 30, 202215.7778 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.97 minutes32390414

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
From Dolabella auricularia (sea hare),1TMS,isomer #1CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)N(C(CC1=CC=CC=C1)C1=NC=CS1)[Si](C)(C)C)OC)N(C)C(=O)C(NC(=O)C(C(C)C)N(C)C)C(C)C4718.7Semi standard non polar33892256
From Dolabella auricularia (sea hare),1TMS,isomer #1CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)N(C(CC1=CC=CC=C1)C1=NC=CS1)[Si](C)(C)C)OC)N(C)C(=O)C(NC(=O)C(C(C)C)N(C)C)C(C)C4610.3Standard non polar33892256
From Dolabella auricularia (sea hare),1TMS,isomer #1CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)N(C(CC1=CC=CC=C1)C1=NC=CS1)[Si](C)(C)C)OC)N(C)C(=O)C(NC(=O)C(C(C)C)N(C)C)C(C)C6382.3Standard polar33892256
From Dolabella auricularia (sea hare),1TMS,isomer #2CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)NC(CC1=CC=CC=C1)C1=NC=CS1)OC)N(C)C(=O)C(C(C)C)N(C(=O)C(C(C)C)N(C)C)[Si](C)(C)C4787.7Semi standard non polar33892256
From Dolabella auricularia (sea hare),1TMS,isomer #2CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)NC(CC1=CC=CC=C1)C1=NC=CS1)OC)N(C)C(=O)C(C(C)C)N(C(=O)C(C(C)C)N(C)C)[Si](C)(C)C4638.0Standard non polar33892256
From Dolabella auricularia (sea hare),1TMS,isomer #2CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)NC(CC1=CC=CC=C1)C1=NC=CS1)OC)N(C)C(=O)C(C(C)C)N(C(=O)C(C(C)C)N(C)C)[Si](C)(C)C6413.5Standard polar33892256
From Dolabella auricularia (sea hare),1TBDMS,isomer #1CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)N(C(CC1=CC=CC=C1)C1=NC=CS1)[Si](C)(C)C(C)(C)C)OC)N(C)C(=O)C(NC(=O)C(C(C)C)N(C)C)C(C)C4923.5Semi standard non polar33892256
From Dolabella auricularia (sea hare),1TBDMS,isomer #1CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)N(C(CC1=CC=CC=C1)C1=NC=CS1)[Si](C)(C)C(C)(C)C)OC)N(C)C(=O)C(NC(=O)C(C(C)C)N(C)C)C(C)C4762.2Standard non polar33892256
From Dolabella auricularia (sea hare),1TBDMS,isomer #1CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)N(C(CC1=CC=CC=C1)C1=NC=CS1)[Si](C)(C)C(C)(C)C)OC)N(C)C(=O)C(NC(=O)C(C(C)C)N(C)C)C(C)C6354.4Standard polar33892256
From Dolabella auricularia (sea hare),1TBDMS,isomer #2CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)NC(CC1=CC=CC=C1)C1=NC=CS1)OC)N(C)C(=O)C(C(C)C)N(C(=O)C(C(C)C)N(C)C)[Si](C)(C)C(C)(C)C4991.6Semi standard non polar33892256
From Dolabella auricularia (sea hare),1TBDMS,isomer #2CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)NC(CC1=CC=CC=C1)C1=NC=CS1)OC)N(C)C(=O)C(C(C)C)N(C(=O)C(C(C)C)N(C)C)[Si](C)(C)C(C)(C)C4779.1Standard non polar33892256
From Dolabella auricularia (sea hare),1TBDMS,isomer #2CCC(C)C(C(CC(=O)N1CCCC1C(OC)C(C)C(=O)NC(CC1=CC=CC=C1)C1=NC=CS1)OC)N(C)C(=O)C(C(C)C)N(C(=O)C(C(C)C)N(C)C)[Si](C)(C)C(C)(C)C6389.6Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - From Dolabella auricularia (sea hare) 10V, Positive-QTOFsplash10-0550-0361020900-e8214dbba59f7401403f2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - From Dolabella auricularia (sea hare) 20V, Positive-QTOFsplash10-0ufr-0921030000-8f6c9d00242c7ab07cc32021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - From Dolabella auricularia (sea hare) 40V, Positive-QTOFsplash10-0pb9-4920030100-8c28582e2079436537822021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - From Dolabella auricularia (sea hare) 10V, Negative-QTOFsplash10-001i-1143430900-55edb6479ee82ef4d9522021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - From Dolabella auricularia (sea hare) 20V, Negative-QTOFsplash10-0002-3920003100-f746e4953dab2c7b2ef42021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - From Dolabella auricularia (sea hare) 40V, Negative-QTOFsplash10-005a-6926445600-6479cecc9f360868fa6b2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDC00044726
Chemspider ID90560
KEGG Compound IDC11280
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound100208
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]