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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 00:53:12 UTC
Update Date2021-09-26 22:57:38 UTC
HMDB IDHMDB0247760
Secondary Accession NumbersNone
Metabolite Identification
Common NameVenetoclax
DescriptionVenetoclax, also known as ABT 199 or GDC 0199, belongs to the class of organic compounds known as phenylpiperazines. Phenylpiperazines are compounds containing a phenylpiperazine skeleton, which consists of a piperazine bound to a phenyl group. Based on a literature review a significant number of articles have been published on Venetoclax. This compound has been identified in human blood as reported by (PMID: 31557052 ). Venetoclax is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically Venetoclax is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
ABT 199ChEBI
ABT-199ChEBI
ABT199ChEBI
GDC 0199ChEBI
VenclextaChEBI
4-(4-((2-(4-Chlorophenyl)-4,4-dimethylcyclohex-1-en-1-yl)methyl)piperazin-1-yl)-N-((3-nitro-4-((tetrahydro-2H-pyran-4-ylmethyl)amino)phenyl)sulfonyl)-2-(1H-pyrrolo(2,3-b)pyridin-5-yloxy)benzamideHMDB
VenetoclaxMeSH
Chemical FormulaC45H50ClN7O7S
Average Molecular Weight868.45
Monoisotopic Molecular Weight867.3180959
IUPAC Name4-(4-{[2-(4-chlorophenyl)-4,4-dimethylcyclohex-1-en-1-yl]methyl}piperazin-1-yl)-N-(3-nitro-4-{[(oxan-4-yl)methyl]amino}benzenesulfonyl)-2-{1H-pyrrolo[2,3-b]pyridin-5-yloxy}benzamide
Traditional Name4-(4-{[2-(4-chlorophenyl)-4,4-dimethylcyclohex-1-en-1-yl]methyl}piperazin-1-yl)-N-{3-nitro-4-[(oxan-4-ylmethyl)amino]benzenesulfonyl}-2-{1H-pyrrolo[2,3-b]pyridin-5-yloxy}benzamide
CAS Registry NumberNot Available
SMILES
CC1(C)CCC(CN2CCN(CC2)C2=CC=C(C(=O)NS(=O)(=O)C3=CC=C(NCC4CCOCC4)C(=C3)[N+]([O-])=O)C(OC3=CN=C4NC=CC4=C3)=C2)=C(C1)C1=CC=C(Cl)C=C1
InChI Identifier
InChI=1S/C45H50ClN7O7S/c1-45(2)15-11-33(39(26-45)31-3-5-34(46)6-4-31)29-51-17-19-52(20-18-51)35-7-9-38(42(24-35)60-36-23-32-12-16-47-43(32)49-28-36)44(54)50-61(57,58)37-8-10-40(41(25-37)53(55)56)48-27-30-13-21-59-22-14-30/h3-10,12,16,23-25,28,30,48H,11,13-15,17-22,26-27,29H2,1-2H3,(H,47,49)(H,50,54)
InChI KeyLQBVNQSMGBZMKD-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as phenylpiperazines. Phenylpiperazines are compounds containing a phenylpiperazine skeleton, which consists of a piperazine bound to a phenyl group.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassDiazinanes
Sub ClassPiperazines
Direct ParentPhenylpiperazines
Alternative Parents
Substituents
  • Phenylpiperazine
  • N-arylpiperazine
  • Diaryl ether
  • Aminobenzenesulfonamide
  • Benzenesulfonamide
  • Aminobenzoic acid or derivatives
  • Benzenesulfonyl group
  • Pyrrolopyridine
  • Nitrobenzene
  • Benzoic acid or derivatives
  • Phenol ether
  • Tertiary aliphatic/aromatic amine
  • Phenoxy compound
  • Phenylalkylamine
  • Aniline or substituted anilines
  • Dialkylarylamine
  • Benzoyl
  • Nitroaromatic compound
  • Secondary aliphatic/aromatic amine
  • Halobenzene
  • N-alkylpiperazine
  • Chlorobenzene
  • Benzenoid
  • Aryl halide
  • Monocyclic benzene moiety
  • Aryl chloride
  • Oxane
  • Pyridine
  • Aminosulfonyl compound
  • Sulfonyl
  • Organosulfonic acid or derivatives
  • Organic sulfonic acid or derivatives
  • Heteroaromatic compound
  • Pyrrole
  • Amino acid or derivatives
  • C-nitro compound
  • Organic nitro compound
  • Tertiary amine
  • Tertiary aliphatic amine
  • Oxacycle
  • Azacycle
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Carboxylic acid derivative
  • Allyl-type 1,3-dipolar organic compound
  • Dialkyl ether
  • Ether
  • Secondary amine
  • Organic oxoazanium
  • Organic oxide
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Organic zwitterion
  • Amine
  • Organic nitrogen compound
  • Organosulfur compound
  • Organooxygen compound
  • Organohalogen compound
  • Organic oxygen compound
  • Organochloride
  • Organonitrogen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP6.92ALOGPS
logP6.76ChemAxon
logS-6ALOGPS
pKa (Strongest Acidic)4.19ChemAxon
pKa (Strongest Basic)7.96ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count10ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area172.03 ŲChemAxon
Rotatable Bond Count12ChemAxon
Refractivity238.59 m³·mol⁻¹ChemAxon
Polarizability93.95 ųChemAxon
Number of Rings8ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+274.28730932474
DeepCCS[M-H]-272.39130932474
DeepCCS[M-2H]-306.3130932474
DeepCCS[M+Na]+280.43330932474
AllCCS[M+H]+280.332859911
AllCCS[M+H-H2O]+280.532859911
AllCCS[M+NH4]+280.032859911
AllCCS[M+Na]+279.932859911
AllCCS[M-H]-242.332859911
AllCCS[M+Na-2H]-246.332859911
AllCCS[M+HCOO]-250.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
VenetoclaxCC1(C)CCC(CN2CCN(CC2)C2=CC=C(C(=O)NS(=O)(=O)C3=CC=C(NCC4CCOCC4)C(=C3)[N+]([O-])=O)C(OC3=CN=C4NC=CC4=C3)=C2)=C(C1)C1=CC=C(Cl)C=C18972.1Standard polar33892256
VenetoclaxCC1(C)CCC(CN2CCN(CC2)C2=CC=C(C(=O)NS(=O)(=O)C3=CC=C(NCC4CCOCC4)C(=C3)[N+]([O-])=O)C(OC3=CN=C4NC=CC4=C3)=C2)=C(C1)C1=CC=C(Cl)C=C16415.2Standard non polar33892256
VenetoclaxCC1(C)CCC(CN2CCN(CC2)C2=CC=C(C(=O)NS(=O)(=O)C3=CC=C(NCC4CCOCC4)C(=C3)[N+]([O-])=O)C(OC3=CN=C4NC=CC4=C3)=C2)=C(C1)C1=CC=C(Cl)C=C18019.5Semi standard non polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Venetoclax 10V, Positive-QTOFsplash10-014j-4000000090-35da52e684b4c35fbb9d2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Venetoclax 20V, Positive-QTOFsplash10-0002-9000000050-9323b684fd8c7642e23c2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Venetoclax 40V, Positive-QTOFsplash10-0002-9000000000-cc7841acc6a08205f3312017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Venetoclax 10V, Negative-QTOFsplash10-014i-1000000090-509e72565e22831397b62017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Venetoclax 20V, Negative-QTOFsplash10-014i-3000000090-1cec37529ffd9790e3a32017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Venetoclax 40V, Negative-QTOFsplash10-0a4l-9400000200-f843dd3be744dd08b4a82017-07-26Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB11581
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID29315017
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkVenetoclax
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI ID133021
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]