Hmdb loader
Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-11 01:42:48 UTC
Update Date2021-10-01 19:31:19 UTC
HMDB IDHMDB0248410
Secondary Accession NumbersNone
Metabolite Identification
Common Name5alpha-Androstane-3,17-dione
Description2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,14-dione belongs to the class of organic compounds known as androgens and derivatives. These are 3-hydroxylated C19 steroid hormones. They are known to favor the development of masculine characteristics. They also show profound effects on scalp and body hair in humans. Based on a literature review very few articles have been published on 2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,14-dione. This compound has been identified in human blood as reported by (PMID: 31557052 ). 5alpha-androstane-3,17-dione is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically 5alpha-Androstane-3,17-dione is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
3,17-Dioxy-5 alpha-androstaneMeSH, HMDB
5 alpha-Androstane-3,17-dioneMeSH, HMDB
5 alpha-AndrostanedioneMeSH, HMDB
5 beta-Androstane-3,17-dioneMeSH, HMDB
Androstane-3,17-dione, (2-3(H)-labeled, (2alpha,5beta))-isomerMeSH, HMDB
Androstane-3,17-dione, (2-3(H)-labeled, (2beta,5beta))-isomerMeSH, HMDB
Androstane-3,17-dione, (4-(3)H-labeled, (4alpha,5beta))-isomerMeSH, HMDB
Androstane-3,17-dione, (4-(3)H-labeled, (4beta,5beta))-isomerMeSH, HMDB
Androstane-3,17-dione, (5alpha)-isomerMeSH, HMDB
Androstane-3,17-dione, (5beta)-isomerMeSH, HMDB
Chemical FormulaC19H28O2
Average Molecular Weight288.431
Monoisotopic Molecular Weight288.208930142
IUPAC Name2,15-dimethyltetracyclo[8.7.0.0²,⁷.0¹¹,¹⁵]heptadecane-5,14-dione
Traditional Name5a-androstane-3,17-dione
CAS Registry NumberNot Available
SMILES
CC12CCC3C(CCC4CC(=O)CCC34C)C1CCC2=O
InChI Identifier
InChI=1S/C19H28O2/c1-18-9-7-13(20)11-12(18)3-4-14-15-5-6-17(21)19(15,2)10-8-16(14)18/h12,14-16H,3-11H2,1-2H3
InChI KeyRAJWOBJTTGJROA-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as androgens and derivatives. These are 3-hydroxylated C19 steroid hormones. They are known to favor the development of masculine characteristics. They also show profound effects on scalp and body hair in humans.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassSteroids and steroid derivatives
Sub ClassAndrostane steroids
Direct ParentAndrogens and derivatives
Alternative Parents
Substituents
  • Androgen-skeleton
  • Oxosteroid
  • 17-oxosteroid
  • 3-oxosteroid
  • Cyclic ketone
  • Ketone
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aliphatic homopolycyclic compound
Molecular FrameworkAliphatic homopolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.4ALOGPS
logP3.97ChemAxon
logS-4.6ALOGPS
pKa (Strongest Acidic)19.78ChemAxon
pKa (Strongest Basic)-7.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area34.14 ŲChemAxon
Rotatable Bond Count0ChemAxon
Refractivity82.78 m³·mol⁻¹ChemAxon
Polarizability33.73 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M-2H]-203.03930932474
DeepCCS[M+Na]+178.56730932474
AllCCS[M+H]+174.032859911
AllCCS[M+H-H2O]+170.832859911
AllCCS[M+NH4]+176.932859911
AllCCS[M+Na]+177.732859911
AllCCS[M-H]-178.832859911
AllCCS[M+Na-2H]-178.932859911
AllCCS[M+HCOO]-179.232859911

Predicted Retention Times

Underivatized

Chromatographic MethodRetention TimeReference
Predicted by Siyang on May 30, 202217.8755 minutes33406817
Predicted by Siyang using ReTip algorithm on June 8, 20221.59 minutes32390414

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
5alpha-Androstane-3,17-dione,1TMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C)=CCC43C)C1CCC2=O2602.7Semi standard non polar33892256
5alpha-Androstane-3,17-dione,1TMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C)=CCC43C)C1CCC2=O2461.6Standard non polar33892256
5alpha-Androstane-3,17-dione,1TMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C)=CCC43C)C1CCC2=O2950.2Standard polar33892256
5alpha-Androstane-3,17-dione,1TMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C)CCC43C)C1CCC2=O2590.1Semi standard non polar33892256
5alpha-Androstane-3,17-dione,1TMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C)CCC43C)C1CCC2=O2471.2Standard non polar33892256
5alpha-Androstane-3,17-dione,1TMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C)CCC43C)C1CCC2=O2943.8Standard polar33892256
5alpha-Androstane-3,17-dione,1TMS,isomer #3CC12CCC3C(CCC4CC(=O)CCC43C)C1CC=C2O[Si](C)(C)C2605.9Semi standard non polar33892256
5alpha-Androstane-3,17-dione,1TMS,isomer #3CC12CCC3C(CCC4CC(=O)CCC43C)C1CC=C2O[Si](C)(C)C2428.8Standard non polar33892256
5alpha-Androstane-3,17-dione,1TMS,isomer #3CC12CCC3C(CCC4CC(=O)CCC43C)C1CC=C2O[Si](C)(C)C2862.8Standard polar33892256
5alpha-Androstane-3,17-dione,2TMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C)=CCC43C)C1CC=C2O[Si](C)(C)C2647.7Semi standard non polar33892256
5alpha-Androstane-3,17-dione,2TMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C)=CCC43C)C1CC=C2O[Si](C)(C)C2521.2Standard non polar33892256
5alpha-Androstane-3,17-dione,2TMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C)=CCC43C)C1CC=C2O[Si](C)(C)C2950.5Standard polar33892256
5alpha-Androstane-3,17-dione,2TMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C)CCC43C)C1CC=C2O[Si](C)(C)C2676.3Semi standard non polar33892256
5alpha-Androstane-3,17-dione,2TMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C)CCC43C)C1CC=C2O[Si](C)(C)C2532.1Standard non polar33892256
5alpha-Androstane-3,17-dione,2TMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C)CCC43C)C1CC=C2O[Si](C)(C)C2944.4Standard polar33892256
5alpha-Androstane-3,17-dione,1TBDMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C(C)(C)C)=CCC43C)C1CCC2=O2842.7Semi standard non polar33892256
5alpha-Androstane-3,17-dione,1TBDMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C(C)(C)C)=CCC43C)C1CCC2=O2688.9Standard non polar33892256
5alpha-Androstane-3,17-dione,1TBDMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C(C)(C)C)=CCC43C)C1CCC2=O3112.5Standard polar33892256
5alpha-Androstane-3,17-dione,1TBDMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C(C)(C)C)CCC43C)C1CCC2=O2838.5Semi standard non polar33892256
5alpha-Androstane-3,17-dione,1TBDMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C(C)(C)C)CCC43C)C1CCC2=O2713.7Standard non polar33892256
5alpha-Androstane-3,17-dione,1TBDMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C(C)(C)C)CCC43C)C1CCC2=O3106.1Standard polar33892256
5alpha-Androstane-3,17-dione,1TBDMS,isomer #3CC12CCC3C(CCC4CC(=O)CCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C2870.0Semi standard non polar33892256
5alpha-Androstane-3,17-dione,1TBDMS,isomer #3CC12CCC3C(CCC4CC(=O)CCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C2589.9Standard non polar33892256
5alpha-Androstane-3,17-dione,1TBDMS,isomer #3CC12CCC3C(CCC4CC(=O)CCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C3027.1Standard polar33892256
5alpha-Androstane-3,17-dione,2TBDMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C(C)(C)C)=CCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C3122.5Semi standard non polar33892256
5alpha-Androstane-3,17-dione,2TBDMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C(C)(C)C)=CCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C2792.9Standard non polar33892256
5alpha-Androstane-3,17-dione,2TBDMS,isomer #1CC12CCC3C(CCC4CC(O[Si](C)(C)C(C)(C)C)=CCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C3198.4Standard polar33892256
5alpha-Androstane-3,17-dione,2TBDMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C(C)(C)C)CCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C3141.8Semi standard non polar33892256
5alpha-Androstane-3,17-dione,2TBDMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C(C)(C)C)CCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C2810.4Standard non polar33892256
5alpha-Androstane-3,17-dione,2TBDMS,isomer #2CC12CCC3C(CCC4C=C(O[Si](C)(C)C(C)(C)C)CCC43C)C1CC=C2O[Si](C)(C)C(C)(C)C3194.3Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 5alpha-Androstane-3,17-dione GC-MS (Non-derivatized) - 70eV, Positivesplash10-03ea-0490000000-fda92178d52f614e187e2021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 5alpha-Androstane-3,17-dione GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 5alpha-Androstane-3,17-dione GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 5alpha-Androstane-3,17-dione GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Androstane-3,17-dione 10V, Positive-QTOFsplash10-0079-0090000000-cb3e88eb5d44f1c19d582021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Androstane-3,17-dione 20V, Positive-QTOFsplash10-0uk9-1690000000-c4537f54d61d04bdb5572021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Androstane-3,17-dione 40V, Positive-QTOFsplash10-05r3-6910000000-9afbbb3f63dd34bcf0a02021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Androstane-3,17-dione 10V, Negative-QTOFsplash10-000i-0090000000-383f8ad782110ec64fbf2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Androstane-3,17-dione 20V, Negative-QTOFsplash10-000i-0090000000-383f8ad782110ec64fbf2021-10-12Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 5alpha-Androstane-3,17-dione 40V, Negative-QTOFsplash10-000i-0190000000-ec01046229b8d4a20fcd2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID430
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound443
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]

Enzymes

General function:
Not Available
Specific function:
Involved in the degradation of cholesterol (PubMed:18031290, PubMed:21987574). Catalyzes the elimination of the C-1 and C-2 hydrogen atoms of the A-ring from the polycyclic ring structure of 3-ketosteroids (PubMed:18031290). Has a clear preference for 3-ketosteroids with a saturated A-ring, displaying highest activity on 5alpha-AD (5alpha-androstane-3,17-dione) and 5alpha-T (5alpha-testosterone, also known as 17beta-hydroxy-5alpha-androstane-3-one) (PubMed:18031290). Is also involved in the formation of 3-keto-1,4-diene-steroid from 3-keto-4-ene-steroid (PubMed:21987574). Catalyzes the conversion of 3-oxo-23,24-bisnorchol-4-en-22-oyl-coenzyme A thioester (4-BNC-CoA) to 3-oxo-23,24-bisnorchola-1,4-dien-22-oyl-coenzyme A thioester (1,4-BNC-CoA) (PubMed:21987574).
Gene Name:
KSTD
Uniprot ID:
P71864
Molecular weight:
60635.61