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Record Information
Version5.0
StatusDetected but not Quantified
Creation Date2021-09-12 00:30:19 UTC
Update Date2021-09-26 23:18:24 UTC
HMDB IDHMDB0260332
Secondary Accession NumbersNone
Metabolite Identification
Common NameN-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamide
DescriptionN-[(3-{8-oxa-2-azatricyclo[8.4.0.0²,⁶]tetradeca-1(14),3,5,10,12-pentaen-12-yl}-2-oxo-1,3-oxazolidin-5-yl)methyl]ethanimidic acid belongs to the class of organic compounds known as oxazolidinones. Oxazolidinones are compounds containing an oxazolidinone moiety, which is an oxazolidine bearing a ketone group. Based on a literature review very few articles have been published on N-[(3-{8-oxa-2-azatricyclo[8.4.0.0²,⁶]tetradeca-1(14),3,5,10,12-pentaen-12-yl}-2-oxo-1,3-oxazolidin-5-yl)methyl]ethanimidic acid. This compound has been identified in human blood as reported by (PMID: 31557052 ). N-[[(5s)-3-(4,6-dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamide is not a naturally occurring metabolite and is only found in those individuals exposed to this compound or its derivatives. Technically N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamide is part of the human exposome. The exposome can be defined as the collection of all the exposures of an individual in a lifetime and how those exposures relate to health. An individual's exposure begins before birth and includes insults from environmental and occupational sources.
Structure
Thumb
Synonyms
ValueSource
N-[(3-{8-oxa-2-azatricyclo[8.4.0.0,]tetradeca-1(14),3,5,10,12-pentaen-12-yl}-2-oxo-1,3-oxazolidin-5-yl)methyl]ethanimidateGenerator
Chemical FormulaC18H19N3O4
Average Molecular Weight341.367
Monoisotopic Molecular Weight341.137556104
IUPAC NameN-[(3-{8-oxa-2-azatricyclo[8.4.0.0^{2,6}]tetradeca-1(10),3,5,11,13-pentaen-12-yl}-2-oxo-1,3-oxazolidin-5-yl)methyl]acetamide
Traditional NameN-[(3-{8-oxa-2-azatricyclo[8.4.0.0^{2,6}]tetradeca-1(10),3,5,11,13-pentaen-12-yl}-2-oxo-1,3-oxazolidin-5-yl)methyl]acetamide
CAS Registry NumberNot Available
SMILES
CC(=O)NCC1CN(C(=O)O1)C1=CC2=C(C=C1)N1C=CC=C1COC2
InChI Identifier
InChI=1S/C18H19N3O4/c1-12(22)19-8-16-9-21(18(23)25-16)14-4-5-17-13(7-14)10-24-11-15-3-2-6-20(15)17/h2-7,16H,8-11H2,1H3,(H,19,22)
InChI KeyQXXKVYNZPDIMSW-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as oxazolidinones. Oxazolidinones are compounds containing an oxazolidinone moiety, which is an oxazolidine bearing a ketone group.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassAzolidines
Sub ClassOxazolidines
Direct ParentOxazolidinones
Alternative Parents
Substituents
  • Benzenoid
  • Oxazolidinone
  • Heteroaromatic compound
  • Acetamide
  • Carbamic acid ester
  • Pyrrole
  • Secondary carboxylic acid amide
  • Carbonic acid derivative
  • Carboxamide group
  • Oxacycle
  • Azacycle
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP0.93ALOGPS
logP1.11ChemAxon
logS-2.6ALOGPS
pKa (Strongest Acidic)15.27ChemAxon
pKa (Strongest Basic)-1.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area72.8 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity100.51 m³·mol⁻¹ChemAxon
Polarizability36.3 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+179.53832859911
AllCCS[M+H-H2O]+176.60532859911
AllCCS[M+Na]+183.02432859911
AllCCS[M+NH4]+182.24732859911
AllCCS[M-H]-181.58432859911
AllCCS[M+Na-2H]-181.21532859911
AllCCS[M+HCOO]-180.94432859911
DeepCCS[M+H]+174.53630932474
DeepCCS[M-H]-172.17830932474
DeepCCS[M-2H]-206.23830932474
DeepCCS[M+Na]+181.46530932474

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamideCC(=O)NCC1CN(C(=O)O1)C1=CC2=C(C=C1)N1C=CC=C1COC24623.4Standard polar33892256
N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamideCC(=O)NCC1CN(C(=O)O1)C1=CC2=C(C=C1)N1C=CC=C1COC23167.6Standard non polar33892256
N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamideCC(=O)NCC1CN(C(=O)O1)C1=CC2=C(C=C1)N1C=CC=C1COC23561.5Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamide,1TMS,isomer #1CC(=O)N(CC1CN(C2=CC=C3C(=C2)COCC2=CC=CN32)C(=O)O1)[Si](C)(C)C3270.3Semi standard non polar33892256
N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamide,1TMS,isomer #1CC(=O)N(CC1CN(C2=CC=C3C(=C2)COCC2=CC=CN32)C(=O)O1)[Si](C)(C)C3223.7Standard non polar33892256
N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamide,1TMS,isomer #1CC(=O)N(CC1CN(C2=CC=C3C(=C2)COCC2=CC=CN32)C(=O)O1)[Si](C)(C)C4291.8Standard polar33892256
N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamide,1TBDMS,isomer #1CC(=O)N(CC1CN(C2=CC=C3C(=C2)COCC2=CC=CN32)C(=O)O1)[Si](C)(C)C(C)(C)C3479.6Semi standard non polar33892256
N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamide,1TBDMS,isomer #1CC(=O)N(CC1CN(C2=CC=C3C(=C2)COCC2=CC=CN32)C(=O)O1)[Si](C)(C)C(C)(C)C3456.4Standard non polar33892256
N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamide,1TBDMS,isomer #1CC(=O)N(CC1CN(C2=CC=C3C(=C2)COCC2=CC=CN32)C(=O)O1)[Si](C)(C)C(C)(C)C4329.5Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamide GC-MS (Non-derivatized) - 70eV, Positivesplash10-03dl-6094000000-8d77a596a107ad9e53da2021-09-23Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - N-[[(5S)-3-(4,6-Dihydropyrrolo[1,2-a][4,1]benzoxazepin-8-yl)-2-oxo-1,3-oxazolidin-5-yl]methyl]acetamide GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen Locations
  • Blood
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodDetected but not QuantifiedNot QuantifiedNot SpecifiedNot SpecifiedNormal details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Barupal DK, Fiehn O: Generating the Blood Exposome Database Using a Comprehensive Text Mining and Database Fusion Approach. Environ Health Perspect. 2019 Sep;127(9):97008. doi: 10.1289/EHP4713. Epub 2019 Sep 26. [PubMed:31557052 ]