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Showing metabocard for 6-Hydroxynicotinic acid (HMDB02658)

Record Information
Version 3.5
Creation Date 2006-05-22 09:12:01 -0600
Update Date 2013-02-08 17:12:02 -0700
HMDB ID HMDB02658
Secondary Accession Numbers None
Metabolite Identification
Common Name 6-Hydroxynicotinic acid
Description 6-hydroxynicotinic acid (6-OHNA) is exploited in the use of NMR spectroscopy or gas chromatography--mass spectrometry for the diagnosis of Pseudomonas aeruginosa in urinary tract infection. Among the common bacteria causing urinary infection, only P. aeruginosa produces 6-hydroxynicotinic acid from nicotinic acid. Pseudomonas aeruginosa infection has been reported to be the third leading cause of urinary infection, accounting for 11% of such infections, the first and second being Escherichia coli and Klebsiella pneumonia, respectively. Analyses of the NMR spectra of the bacterial media with variable cell count of P. aeruginosa, shows that the intensity of the signals of the 6-hydroxynicotinic acid increases with increasing number of bacterial cells. (PMID: 3926801 Link_out, 15759292 Link_out).
Structure Thumb
Download: MOL | SDF | SMILES | InChI
Display: 2D Structure | 3D Structure
Synonyms
  1. 1,6-Dihydro-6-oxo-3-pyridinecarboxylic acid
  2. 1,6-Dihydro-6-oxo-Nicotinic acid
  3. 2-Hydroxy-5-carboxypyridine
  4. 2-Hydroxypyridine-5-carboxylic acid
  5. 2-Pyridone-5-carboxylic acid
  6. 5-Carboxy-2-pyridone
  7. 6-Hydroxy-Nicotinic acid
  8. 6-Hydroxyniacin
  9. 6-Hydroxynicotinate
  10. 6-Hydroxynicotinic acid
  11. 6-Hydroxypyridine-3-carboxylic acid
Chemical Formula C6H5NO3
Average Molecular Weight 139.1088
Monoisotopic Molecular Weight 139.026943031
IUPAC Name 6-hydroxypyridine-3-carboxylic acid
Traditional IUPAC Name 6-hydroxynicotinic acid
CAS Registry Number 5006-66-6
SMILES OC(=O)C1=CN=C(O)C=C1
InChI Identifier InChI=1S/C6H5NO3/c8-5-2-1-4(3-7-5)6(9)10/h1-3H,(H,7,8)(H,9,10)
InChI Key BLHCMGRVFXRYRN-UHFFFAOYSA-N
Chemical Taxonomy
Kingdom Organic Compounds
Super Class Aromatic Heteromonocyclic Compounds
Class Pyridines and Derivatives
Sub Class Pyridinecarboxylic Acids and Derivatives
Other Descriptors
  • Pyridine alkaloids(KEGG)
  • Pyridines and Derivatives
  • monohydroxypyridine(ChEBI)
Substituents
  • Carboxylic Acid
  • Pyridinone
Direct Parent Pyridinecarboxylic Acids and Derivatives
Ontology
Status Detected and Quantified
Origin
  • Endogenous
  • Microbial
Biofunction Not Available
Application Not Available
Cellular locations Not Available
Physical Properties
State Solid
Experimental Properties
Property Value Reference
Melting Point 310 °C Not Available
Boiling Point Not Available Not Available
Water Solubility Not Available Not Available
LogP Not Available Not Available
Predicted Properties
Property Value Source
Water Solubility 13.7 g/L ALOGPS
LogP 0.71 ALOGPS
LogP 0.7 ChemAxon
LogS -1.01 ALOGPS
pKa (strongest acidic) 3.77 ChemAxon
pKa (strongest basic) 0.51 ChemAxon
Hydrogen Acceptor Count 4 ChemAxon
Hydrogen Donor Count 2 ChemAxon
Polar Surface Area 70.42 A2 ChemAxon
Rotatable Bond Count 1 ChemAxon
Refractivity 33.45 ChemAxon
Polarizability 12.31 ChemAxon
Formal Charge 0 ChemAxon
Physiological Charge -1 ChemAxon
Spectra
1H NMR Spectrum
MS/MS Spectrum LC-ESI-QQ (API3000, Applied Biosystems) 10
MS/MS Spectrum LC-ESI-QQ (API3000, Applied Biosystems) 20
MS/MS Spectrum LC-ESI-QQ (API3000, Applied Biosystems) 30
MS/MS Spectrum LC-ESI-QQ (API3000, Applied Biosystems) 40
MS/MS Spectrum LC-ESI-QQ (API3000, Applied Biosystems) 50
MS/MS Spectrum LC-ESI-QQ (API3000, Applied Biosystems) 10
MS/MS Spectrum LC-ESI-QQ (API3000, Applied Biosystems) 20
MS/MS Spectrum LC-ESI-QQ (API3000, Applied Biosystems) 30
MS/MS Spectrum LC-ESI-QQ (API3000, Applied Biosystems) 40
MS/MS Spectrum LC-ESI-QQ (API3000, Applied Biosystems) 50
MS/MS Spectrum GC-EI-TOF (Pegasus III TOF-MS system, Leco; GC 6890, Agilent Technologies )
MS/MS Spectrum LC-ESI-QTOF (UPLC Q-Tof Premier, Waters)
MS/MS Spectrum LC-ESI-QTOF (UPLC Q-Tof Premier, Waters) 30
MS/MS Spectrum LC-ESI-QTOF (UPLC Q-Tof Premier, Waters)
MS/MS Spectrum GC-MS
[1H,13C] 2D NMR Spectrum
Biological Properties
Cellular Locations Not Available
Biofluid Locations
  • Urine
Tissue Location Not Available
Pathways Not Available
Normal Concentrations
Biofluid Status Value Age Sex Condition Comments
Urine Detected and not Quantified
Article_icon
Not Applicable Adult (>18 years old) Both Normal Not Available
Abnormal Concentrations
Biofluid Status Value Age Sex Condition Comments
Urine Detected and Quantified
Article_icon
0.5 (0.0-1.0) umol/mmol creatinine Adult (>18 years old) Both Prostate Cancer Estimated concentration
Urine Detected and not Quantified
Article_icon
Not Applicable Adult (>18 years old) Both Autosomal dominant polycystic kidney disease Not Available
Associated Disorders and Diseases
Disease References
Prostate cancer
  • Sreekumar A, Poisson LM, Rajendiran TM, Khan AP, Cao Q, Yu J, Laxman B, Mehra R, Lonigro RJ, Li Y, Nyati MK, Ahsan A, Kalyana-Sundaram S, Han B, Cao X, Byun J, Omenn GS, Ghosh D, Pennathur S, Alexander DC, Berger A, Shuster JR, Wei JT, Varambally S, Beecher C, Chinnaiyan AM: Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression. Nature. 2009 Feb 12;457(7231):910-4. Pubmed: 19212411 Link_out
    Associated OMIM IDs
    DrugBank ID Not Available
    Phenol Explorer Compound ID Not Available
    Phenol Explorer Metabolite ID Not Available
    FoodDB ID FDB023041
    KNApSAcK ID Not Available
    Chemspider ID 65756 Link_out
    KEGG Compound ID C01020 Link_out
    BioCyc ID Not Available
    BiGG ID Not Available
    Wikipedia Link Not Available
    NuGOwiki Link HMDB02658 Link_out
    Metagene Link HMDB02658 Link_out
    METLIN ID Not Available
    PubChem Compound 72924 Link_out
    PDB ID Not Available
    ChEBI ID 16168 Link_out
    References
    Synthesis Reference Boyer, J. H.; Schoen, W. 6-Hydroxynicotinic acid. Organic Syntheses (1956), 36 44-6.
    Material Safety Data Sheet (MSDS) Download (PDF)
    General References
    1. Gupta A, Dwivedi M, Nagana Gowda GA, Ayyagari A, Mahdi AA, Bhandari M, Khetrapal CL: (1)H NMR spectroscopy in the diagnosis of Pseudomonas aeruginosa-induced urinary tract infection. NMR Biomed. 2005 Aug;18(5):293-9. Pubmed: 15759292 Link_out