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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2021-09-24 20:13:38 UTC
Update Date2021-09-24 20:13:38 UTC
HMDB IDHMDB0304861
Secondary Accession NumbersNone
Metabolite Identification
Common NameRelugolix
DescriptionRelugolix belongs to the class of organic compounds known as n-phenylureas. N-phenylureas are compounds containing a N-phenylurea moiety, which is structurally characterized by a phenyl group linked to one nitrogen atom of a urea group. Based on a literature review very few articles have been published on Relugolix.
Structure
Thumb
Synonyms
ValueSource
TAK 385MeSH
TAK-385MeSH
1-(4-(1-(2,6-Difluorobenzyl)-5-((dimethylamino)methyl)-3-(6-methoxypyridazin-3-yl)-2,4-dioxo-1,2,3,4-tetrahydrothieno(2,3-D)pyrimidin-6-yl)phenyl)-3-methoxyureaMeSH
N-(4-{1-[(2,6-difluorophenyl)methyl]-5-[(dimethylamino)methyl]-3-(6-methoxypyridazin-3-yl)-2,4-dioxo-1H,2H,3H,4H-thieno[2,3-D]pyrimidin-6-yl}phenyl)-n'-methoxycarbamimidateGenerator
Chemical FormulaC29H27F2N7O5S
Average Molecular Weight623.64
Monoisotopic Molecular Weight623.176244497
IUPAC Name1-(4-{1-[(2,6-difluorophenyl)methyl]-5-[(dimethylamino)methyl]-3-(6-methoxypyridazin-3-yl)-2,4-dioxo-1H,2H,3H,4H-thieno[2,3-d]pyrimidin-6-yl}phenyl)-3-methoxyurea
Traditional Name1-(4-{1-[(2,6-difluorophenyl)methyl]-5-[(dimethylamino)methyl]-3-(6-methoxypyridazin-3-yl)-2,4-dioxothieno[2,3-d]pyrimidin-6-yl}phenyl)-3-methoxyurea
CAS Registry NumberNot Available
SMILES
CONC(=O)NC1=CC=C(C=C1)C1=C(CN(C)C)C2=C(S1)N(CC1=C(F)C=CC=C1F)C(=O)N(C2=O)C1=CC=C(OC)N=N1
InChI Identifier
InChI=1S/C29H27F2N7O5S/c1-36(2)14-19-24-26(39)38(22-12-13-23(42-3)34-33-22)29(41)37(15-18-20(30)6-5-7-21(18)31)27(24)44-25(19)16-8-10-17(11-9-16)32-28(40)35-43-4/h5-13H,14-15H2,1-4H3,(H2,32,35,40)
InChI KeyAOMXMOCNKJTRQP-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as n-phenylureas. N-phenylureas are compounds containing a N-phenylurea moiety, which is structurally characterized by a phenyl group linked to one nitrogen atom of a urea group.
KingdomOrganic compounds
Super ClassBenzenoids
ClassBenzene and substituted derivatives
Sub ClassN-phenylureas
Direct ParentN-phenylureas
Alternative Parents
Substituents
  • N-phenylurea
  • Thienopyrimidine
  • Alkyl aryl ether
  • Fluorobenzene
  • Halobenzene
  • Pyrimidone
  • Aralkylamine
  • Aryl fluoride
  • Aryl halide
  • Pyridazine
  • Pyrimidine
  • Thiophene
  • Heteroaromatic compound
  • Vinylogous amide
  • Tertiary amine
  • Urea
  • Tertiary aliphatic amine
  • Lactam
  • Azacycle
  • Organoheterocyclic compound
  • Ether
  • Organic nitrogen compound
  • Hydrocarbon derivative
  • Organohalogen compound
  • Organic oxide
  • Organic oxygen compound
  • Organofluoride
  • Carbonyl group
  • Amine
  • Organonitrogen compound
  • Organooxygen compound
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP3.16ALOGPS
logP3.94ChemAxon
logS-5.5ALOGPS
pKa (Strongest Acidic)9.07ChemAxon
pKa (Strongest Basic)7.69ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count8ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area129.23 ŲChemAxon
Rotatable Bond Count9ChemAxon
Refractivity160.92 m³·mol⁻¹ChemAxon
Polarizability62.63 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
AllCCS[M+H]+238.74732859911
AllCCS[M+H-H2O]+237.58332859911
AllCCS[M+Na]+240.08432859911
AllCCS[M+NH4]+239.7932859911
AllCCS[M-H]-227.11332859911
AllCCS[M+Na-2H]-228.48432859911
AllCCS[M+HCOO]-230.13632859911
DeepCCS[M+H]+232.65530932474
DeepCCS[M-H]-230.7630932474
DeepCCS[M-2H]-264.030932474
DeepCCS[M+Na]+238.32830932474

Predicted Kovats Retention Indices

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Relugolix,1TMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(NC(=O)N(OC)[Si](C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N15016.6Semi standard non polar33892256
Relugolix,1TMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(NC(=O)N(OC)[Si](C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N14466.3Standard non polar33892256
Relugolix,1TMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(NC(=O)N(OC)[Si](C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N16657.9Standard polar33892256
Relugolix,1TMS,isomer #2CONC(=O)N(C1=CC=C(C2=C(CN(C)C)C3=C(S2)N(CC2=C(F)C=CC=C2F)C(=O)N(C2=CC=C(OC)N=N2)C3=O)C=C1)[Si](C)(C)C4894.4Semi standard non polar33892256
Relugolix,1TMS,isomer #2CONC(=O)N(C1=CC=C(C2=C(CN(C)C)C3=C(S2)N(CC2=C(F)C=CC=C2F)C(=O)N(C2=CC=C(OC)N=N2)C3=O)C=C1)[Si](C)(C)C4329.7Standard non polar33892256
Relugolix,1TMS,isomer #2CONC(=O)N(C1=CC=C(C2=C(CN(C)C)C3=C(S2)N(CC2=C(F)C=CC=C2F)C(=O)N(C2=CC=C(OC)N=N2)C3=O)C=C1)[Si](C)(C)C6351.9Standard polar33892256
Relugolix,2TMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(N(C(=O)N(OC)[Si](C)(C)C)[Si](C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N14819.6Semi standard non polar33892256
Relugolix,2TMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(N(C(=O)N(OC)[Si](C)(C)C)[Si](C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N14253.6Standard non polar33892256
Relugolix,2TMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(N(C(=O)N(OC)[Si](C)(C)C)[Si](C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N15865.4Standard polar33892256
Relugolix,1TBDMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(NC(=O)N(OC)[Si](C)(C)C(C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N15189.3Semi standard non polar33892256
Relugolix,1TBDMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(NC(=O)N(OC)[Si](C)(C)C(C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N14589.8Standard non polar33892256
Relugolix,1TBDMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(NC(=O)N(OC)[Si](C)(C)C(C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N16519.1Standard polar33892256
Relugolix,1TBDMS,isomer #2CONC(=O)N(C1=CC=C(C2=C(CN(C)C)C3=C(S2)N(CC2=C(F)C=CC=C2F)C(=O)N(C2=CC=C(OC)N=N2)C3=O)C=C1)[Si](C)(C)C(C)(C)C5071.2Semi standard non polar33892256
Relugolix,1TBDMS,isomer #2CONC(=O)N(C1=CC=C(C2=C(CN(C)C)C3=C(S2)N(CC2=C(F)C=CC=C2F)C(=O)N(C2=CC=C(OC)N=N2)C3=O)C=C1)[Si](C)(C)C(C)(C)C4429.8Standard non polar33892256
Relugolix,1TBDMS,isomer #2CONC(=O)N(C1=CC=C(C2=C(CN(C)C)C3=C(S2)N(CC2=C(F)C=CC=C2F)C(=O)N(C2=CC=C(OC)N=N2)C3=O)C=C1)[Si](C)(C)C(C)(C)C6287.0Standard polar33892256
Relugolix,2TBDMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(N(C(=O)N(OC)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N15143.7Semi standard non polar33892256
Relugolix,2TBDMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(N(C(=O)N(OC)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N14441.3Standard non polar33892256
Relugolix,2TBDMS,isomer #1COC1=CC=C(N2C(=O)C3=C(SC(C4=CC=C(N(C(=O)N(OC)[Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C=C4)=C3CN(C)C)N(CC3=C(F)C=CC=C3F)C2=O)N=N15851.8Standard polar33892256
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 10V, Positive-QTOFsplash10-00fu-2100196000-fed7f82dbb4d16f3286f2017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 20V, Positive-QTOFsplash10-004l-3200190000-85d6d6d594c49dc075902017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 40V, Positive-QTOFsplash10-004i-1900210000-0d544612e4e143cb181d2017-07-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 10V, Negative-QTOFsplash10-00di-9004177000-6f42e85a7039a9f170ab2017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 20V, Negative-QTOFsplash10-0005-8000090000-84226f556138a3612d962017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 40V, Negative-QTOFsplash10-00dl-9000320000-5cffa21e3e8dfa2d16c52017-07-26Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 10V, Positive-QTOFsplash10-00di-0000019000-8742beb9846948ce96422021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 20V, Positive-QTOFsplash10-00bc-0000093000-d245f170b5f3e8879fd82021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 40V, Positive-QTOFsplash10-006t-0001391000-6525c10ef01b74fb7b6c2021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 10V, Negative-QTOFsplash10-00di-0000029000-e7ea14ad3bd15f0533ea2021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 20V, Negative-QTOFsplash10-0a6s-0000090000-0ff5b2fc4a14a1fc09982021-10-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Relugolix 40V, Negative-QTOFsplash10-000i-1000890000-f084b5d3dfb8d48b746d2021-10-22Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB11853
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID8524431
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available