Showing metabocard for (2E)-Dodecenoyl-CoA (HMDB03712)

IdentificationTaxonomyOntologyPhysical propertiesSpectraBiological propertiesConcentrationsLinksReferencesenzymes (114)transporters (1) Show 115 proteinsXML
enzymes (114)transporters (1) Show 115 proteins
Record Information
Version3.6
Creation Date2006-08-13 03:47:32 UTC
Update Date2013-02-09 00:12:44 UTC
HMDB IDHMDB03712
Secondary Accession NumbersNone
Metabolite Identification
Common Name(2E)-Dodecenoyl-CoA
Description(2E)-Dodecenoyl-CoA is an intermediate in fatty acid metabolism, the substrate of the enzyme acyl-CoA oxidase [EC-1.3.3.6], and enzymes acyl-CoA dehydrogenase, long-chain-acyl-CoA dehydrogenase [EC 1.3.99.3-1.3.99.13]; (2E)-Dodecenoyl-CoA is an intermediate in fatty acid elongation in mitochondria, being the substrate of the enzyme enoyl-CoA hydratase and [EC 4.2.1.17]. (KEGG).
Structure
Thumb
MOLSDFPDBSMILESInChIView Structure
Synonyms
  1. (2E)-Dodec-2-enoyl-CoA
  2. (2E)-Dodec-2-enoyl-Coenzyme A
  3. 2-trans-Dodecenoyl-CoA
  4. 2-trans-Dodecenoyl-Coenzyme A
Chemical FormulaC33H52N7O17P3S
Average Molecular Weight943.789
Monoisotopic Molecular Weight943.235323499
IUPAC Name[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonatooxy)oxolan-2-yl]methyl {[(3R)-3-{[2-({2-[(2E)-dodec-2-enoylsulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}-3-hydroxy-2,2-dimethylpropyl phosphonato]oxy}phosphonate
Traditional IUPAC Name[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-(phosphonatooxy)oxolan-2-yl]methyl [(3R)-3-{[2-({2-[(2E)-dodec-2-enoylsulfanyl]ethyl}carbamoyl)ethyl]carbamoyl}-3-hydroxy-2,2-dimethylpropyl phosphonato]oxyphosphonate
CAS Registry Number1066-12-2
SMILES
CCCCCCCCC\C=C\C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(=O)([O-])OP([O-])(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(=O)([O-])[O-])N1C=NC2=C1N=CN=C2N
InChI Identifier
InChI=1S/C33H56N7O17P3S/c1-4-5-6-7-8-9-10-11-12-13-24(42)61-17-16-35-23(41)14-15-36-31(45)28(44)33(2,3)19-54-60(51,52)57-59(49,50)53-18-22-27(56-58(46,47)48)26(43)32(55-22)40-21-39-25-29(34)37-20-38-30(25)40/h12-13,20-22,26-28,32,43-44H,4-11,14-19H2,1-3H3,(H,35,41)(H,36,45)(H,49,50)(H,51,52)(H2,34,37,38)(H2,46,47,48)/p-4/b13-12+/t22-,26-,27-,28+,32-/m1/s1
InChI KeyIRFYVBULXZMEDE-DEEZISNZSA-J
Chemical Taxonomy
KingdomOrganic Compounds
Super ClassLipids
ClassFatty Acid Esters
Sub ClassAcyl CoAs
Other Descriptors
  • Aromatic Heteropolycyclic Compounds
Substituents
  • 1 Phosphoribosyl Imidazole
  • Aminopyrimidine
  • Carboxamide Group
  • Carboxylic Thioester
  • Coenzyme A
  • Enone
  • Glycosyl Compound
  • Imidazole
  • Imidazopyrimidine
  • Monosaccharide Phosphate
  • N Glycosyl Compound
  • Organic Hypophosphite
  • Organic Phosphite
  • Organic Pyrophosphate
  • Oxolane
  • Pentose Monosaccharide
  • Phosphoric Acid Ester
  • Purine
  • Purine Ribonucleoside Diphosphate
  • Pyrimidine
  • Saccharide
  • Secondary Alcohol
  • Secondary Carboxylic Acid Amide
  • Thiocarboxylic Acid Ester
Direct ParentAcyl CoAs
Ontology
StatusExpected and Not Quantified
Origin
  • Endogenous
  • Food
Biofunction
  • Cell signaling
  • Fuel and energy storage
  • Fuel or energy source
  • Lipid biosynthesis, Fatty acid transport
  • Membrane integrity/stability
Application
  • Nutrients
  • Stabilizers
  • Surfactants and Emulsifiers
Cellular locations
  • Extracellular
  • Membrane
Physical Properties
StateSolid
Experimental Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogP0.519Not Available
Predicted Properties
PropertyValueSource
water solubility2.56 g/LALOGPS
logP2.22ALOGPS
logP-2ChemAxon
logS-2.6ALOGPS
pKa (strongest acidic)0.83ChemAxon
pKa (strongest basic)4.95ChemAxon
physiological charge-4ChemAxon
hydrogen acceptor count17ChemAxon
hydrogen donor count5ChemAxon
polar surface area374.95ChemAxon
rotatable bond count29ChemAxon
refractivity214.85ChemAxon
polarizability90.8ChemAxon
Spectra
SpectraNot Available
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biofluid LocationsNot Available
Tissue LocationNot Available
Pathways
NameSMPDB LinkKEGG Link
Fatty Acid Elongation In MitochondriaSMP00054map00062
Mitochondrial Beta-Oxidation of Medium Chain Saturated Fatty AcidsSMP00481Not Available
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
DrugBank Metabolite IDNot Available
Phenol Explorer Compound IDNot Available
Phenol Explorer Metabolite IDNot Available
FoodDB IDFDB023218
KNApSAcK IDNot Available
Chemspider ID26330706
KEGG Compound IDC03221
BioCyc IDCPD-7222
BiGG ID41433
Wikipedia LinkNot Available
NuGOwiki LinkHMDB03712
Metagene LinkHMDB03712
METLIN IDNot Available
PubChem Compound45266564
PDB IDNot Available
ChEBI ID57330
References
Synthesis ReferenceStruijk, Cornelia B.; Beerthuis, R. K. The enzymic conversion of 3cis-and 3trans-alkenoyl-CoA esters into their 2trans-isomers. Biochimica et Biophysica Acta, Lipids and Lipid Metabolism (1966), 116(1), 12-22.
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Only showing the first 50 proteins. There are 115 proteins in total.

Show all enzymes and transporters

Enzymes

1. 3-ketoacyl-CoA thiolase, mitochondrial
Gene Name:
ACAA2
Uniprot ID:
P42765
2. 3-ketoacyl-CoA thiolase, peroxisomal
Gene Name:
ACAA1
Uniprot ID:
P09110
3. Trifunctional enzyme subunit beta, mitochondrial
Gene Name:
HADHB
Uniprot ID:
P55084
4. Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial
Gene Name:
ALDH6A1
Uniprot ID:
Q02252
5. Long-chain specific acyl-CoA dehydrogenase, mitochondrial
Gene Name:
ACADL
Uniprot ID:
P28330
Reactions
Lauroyl-CoA + FAD unknown (2E)-Dodecenoyl-CoA + FADHdetails
6. Short-chain specific acyl-CoA dehydrogenase, mitochondrial
Gene Name:
ACADS
Uniprot ID:
P16219
7. Medium-chain specific acyl-CoA dehydrogenase, mitochondrial
Gene Name:
ACADM
Uniprot ID:
P11310
Reactions
Lauroyl-CoA + FAD unknown (2E)-Dodecenoyl-CoA + FADHdetails
8. Peroxisomal acyl-coenzyme A oxidase 1
Gene Name:
ACOX1
Uniprot ID:
Q15067
Reactions
Lauroyl-CoA + FAD unknown (2E)-Dodecenoyl-CoA + FADHdetails
9. Peroxisomal acyl-coenzyme A oxidase 2
Gene Name:
ACOX2
Uniprot ID:
Q99424
10. Isovaleryl-CoA dehydrogenase, mitochondrial
Gene Name:
IVD
Uniprot ID:
P26440
11. Peroxisomal acyl-coenzyme A oxidase 3
Gene Name:
ACOX3
Uniprot ID:
O15254
Reactions
Lauroyl-CoA + FAD unknown (2E)-Dodecenoyl-CoA + FADHdetails
12. Glutaryl-CoA dehydrogenase, mitochondrial
Gene Name:
GCDH
Uniprot ID:
Q92947
13. Hepatic triacylglycerol lipase
Gene Name:
LIPC
Uniprot ID:
P11150
14. Diacylglycerol O-acyltransferase 1
Gene Name:
DGAT1
Uniprot ID:
O75907
15. 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
Gene Name:
BCKDHB
Uniprot ID:
P21953
16. 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
Gene Name:
BCKDHA
Uniprot ID:
P12694
17. Acyl-CoA desaturase
Gene Name:
SCD
Uniprot ID:
O00767
18. Peroxisomal bifunctional enzyme
Gene Name:
EHHADH
Uniprot ID:
Q08426
Reactions
(3Z)-dodec-3-enoyl-CoA unknown (2E)-Dodecenoyl-CoAdetails
(S)-3-Hydroxydodecanoyl-CoA unknown (2E)-Dodecenoyl-CoA + Waterdetails
19. Enoyl-CoA hydratase, mitochondrial
Gene Name:
ECHS1
Uniprot ID:
P30084
Reactions
(S)-3-Hydroxydodecanoyl-CoA unknown (2E)-Dodecenoyl-CoA + Waterdetails
20. Trifunctional enzyme subunit alpha, mitochondrial
Gene Name:
HADHA
Uniprot ID:
P40939
Reactions
(S)-3-Hydroxydodecanoyl-CoA unknown (2E)-Dodecenoyl-CoA + Waterdetails
21. Sterol O-acyltransferase 2
Gene Name:
SOAT2
Uniprot ID:
O75908
22. Sterol O-acyltransferase 1
Gene Name:
SOAT1
Uniprot ID:
P35610
23. Bile acid-CoA:amino acid N-acyltransferase
Gene Name:
BAAT
Uniprot ID:
Q14032
24. Long-chain-fatty-acid--CoA ligase 4
Gene Name:
ACSL4
Uniprot ID:
O60488
25. Long-chain-fatty-acid--CoA ligase 1
Gene Name:
ACSL1
Uniprot ID:
P33121
26. Long-chain-fatty-acid--CoA ligase 6
Gene Name:
ACSL6
Uniprot ID:
Q9UKU0
27. Long-chain-fatty-acid--CoA ligase 5
Gene Name:
ACSL5
Uniprot ID:
Q9ULC5
28. Long-chain-fatty-acid--CoA ligase 3
Gene Name:
ACSL3
Uniprot ID:
O95573
29. Glycerol-3-phosphate acyltransferase 1, mitochondrial
Gene Name:
GPAM
Uniprot ID:
Q9HCL2
30. Trans-2-enoyl-CoA reductase, mitochondrial
Gene Name:
MECR
Uniprot ID:
Q9BV79
Reactions
Lauroyl-CoA + NADP unknown (2E)-Dodecenoyl-CoA + NADPH + Hydrogen Iondetails
31. Peroxisomal trans-2-enoyl-CoA reductase
Gene Name:
PECR
Uniprot ID:
Q9BY49
32. Cytosolic acyl coenzyme A thioester hydrolase
Gene Name:
ACOT7
Uniprot ID:
O00154
33. Acyl-coenzyme A thioesterase 2, mitochondrial
Gene Name:
ACOT2
Uniprot ID:
P49753
34. Acyl-coenzyme A thioesterase 4
Gene Name:
ACOT4
Uniprot ID:
Q8N9L9
35. Acyl-coenzyme A thioesterase 8
Gene Name:
ACOT8
Uniprot ID:
O14734
36. Dihydroxyacetone phosphate acyltransferase
Gene Name:
GNPAT
Uniprot ID:
O15228
37. 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma
Gene Name:
AGPAT3
Uniprot ID:
Q9NRZ7
38. 1-acyl-sn-glycerol-3-phosphate acyltransferase beta
Gene Name:
AGPAT2
Uniprot ID:
O15120
39. 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha
Gene Name:
AGPAT1
Uniprot ID:
Q99943
40. Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
Gene Name:
ACADSB
Uniprot ID:
P45954
41. Very long-chain acyl-CoA synthetase
Gene Name:
SLC27A2
Uniprot ID:
O14975
42. Peroxisome proliferator-activated receptor gamma
Gene Name:
PPARG
Uniprot ID:
P37231
43. Peroxisome proliferator-activated receptor alpha
Gene Name:
PPARA
Uniprot ID:
Q07869
44. Peroxisome proliferator-activated receptor delta
Gene Name:
PPARD
Uniprot ID:
Q03181
45. Acyl-CoA-binding protein
Gene Name:
DBI
Uniprot ID:
P07108
46. Fatty acid-binding protein, heart
Gene Name:
FABP3
Uniprot ID:
P05413
47. 1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon
Gene Name:
AGPAT5
Uniprot ID:
Q9NUQ2
48. Bile acyl-CoA synthetase
Gene Name:
SLC27A5
Uniprot ID:
Q9Y2P5
49. Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial
Gene Name:
DBT
Uniprot ID:
P11182
50. 2-acylglycerol O-acyltransferase 2
Gene Name:
MOGAT2
Uniprot ID:
Q3SYC2

Transporters

1. Long-chain fatty acid transport protein 1
Gene Name:
SLC27A1
Uniprot ID:
Q6PCB7

Only showing the first 50 proteins. There are 115 proteins in total.

Show all enzymes and transporters