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Human Metabolome Database Version 3.5

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Showing metabocard for Galactosylceramide (d18:1/24:1(15Z)) (HMDB10712)

Record Information
Version 3.5
Creation Date 2008-09-26 08:11:48 -0600
Update Date 2013-05-21 16:46:33 -0600
HMDB ID HMDB10712
Secondary Accession Numbers None
Metabolite Identification
Common Name Galactosylceramide (d18:1/24:1(15Z))
Description Galactosylceramides (GalCer) are non-acidic monoglycosphingolipids, i.e. a sphingolipid with one carbohydrate moiety attached to a ceramide unit. They are an intermediate in sphingolipid metabolism and is the second to last step in the synthesis of digalactosylceramidesulfate. GalCer is generated from ceramide via the enzyme UDP-galactose ceramide galactosyltransferase [EC:2.4.1.47]. It can be converted to digalactosylceramide via the enzyme glycosyltransferases [EC 2.4.1.-]. Galactosylceramide is the principal glycosphingolipid in brain tissue, hence the trivial name "cerebroside", which was first conferred on it in 1874. Galactosylceramides are found in all nervous tissues, but they can amount to 2% of the dry weight of grey matter and 12% of white matter. They are major constituents of oligodendrocytes. Synthesis of galactosylceramide takes place on the lumenal surface of the endoplasmic reticulum, although it has free access to the cytosolic surface by an energy-independent flip-flop process. GalCer sits in the extracellular leaflet of cell membranes in nanometer sized domains or rafts. The local clustering of GalCer within rafts is thought to facilitate the initial adhesion of certain viruses, including HIV-1 and bacteria to cells through multivalent interactions between receptor proteins and GalCer. A defect in the degradation of cerbrosides leads to a disorder called Krabbe disease. Krabbe disease (also known as globoid cell leukodystrophy or galactosylceramide lipidosis) is a rare, often fatal degenerative disorder that affects the myelin sheath of the nervous system. Krabbe disease is caused by mutations in the GALC gene, which causes a deficiency of galactosylceramidase. Infants with Krabbe disease are normal at birth. Symptoms begin between the ages of 3 and 6 months with irritability, fevers, limb stiffness, seizures, feeding difficulties, vomiting, and slowing of mental and motor development. There are also juvenile- and adult-onset cases of Krabbe disease, which have similar symptoms but slower progression. In infants, the disease is generally fatal before age 2. Patients with late-onset Krabbe disease tend to have a slower progression of the disease and live significantly longer.Cerebrosides are glycosphingolipids. There are four types of glycosphingolipids, the cerebrosides, sulfatides, globosides and gangliosides. Cerebrosides have a single sugar group linked to ceramide. The most common are galactocerebrosides (containing galactose), the least common are glucocerebrosides (containing glucose). Galactocerebrosides are found predominantly in neuronal cell membranes. In contrast glucocerebrosides are not normally found in membranes. Instead, they are typically intermediates in the synthesis or degradation of more complex glycosphingolipids. Galactocerebrosides are synthesized from ceramide and UDP-galactose. Excess lysosomal accumulation of glucocerebrosides is found in Gaucher disease.
Structure Thumb
Download: MOL | SDF | SMILES | InChI
Display: 2D Structure | 3D Structure
Synonyms
  1. a-GalCer
  2. alpha-GalCer
  3. Cerebroside
  4. D-Galactosyl-N-acylsphingosine
  5. D-Galactosylceramide
  6. delta-Galactosyl-N-acylsphingosine
  7. delta-Galactosylceramide
  8. Gal-b-Cer
  9. Gal-beta-1-1'Cer
  10. Gal-beta-Cer
  11. Galactocerebroside
  12. Galactosylceramide
  13. GalCer
  14. N-(15Z-Tetracosenoyl)-1-b-galactosyl-sphing-4-enine
  15. N-(15Z-Tetracosenoyl)-1-beta-galactosyl-sphing-4-enine
Chemical Formula C48H91NO8
Average Molecular Weight 810.238
Monoisotopic Molecular Weight 809.674468893
IUPAC Name (15Z)-N-[(4Z)-3-hydroxy-1-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadec-4-en-2-yl]tetracos-15-enamide
Traditional IUPAC Name (15Z)-N-[(4Z)-3-hydroxy-1-{[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}octadec-4-en-2-yl]tetracos-15-enamide
CAS Registry Number Not Available
SMILES CCCCCCCCCCCCC\C=C/C(O)C(CO[C@@H]1O[C@H](CO)[C@H](O)[C@H](O)[C@H]1O)NC(=O)CCCCCCCCCCCCC\C=C/CCCCCCCC
InChI Identifier InChI=1S/C48H91NO8/c1-3-5-7-9-11-13-15-17-18-19-20-21-22-23-24-26-28-30-32-34-36-38-44(52)49-41(40-56-48-47(55)46(54)45(53)43(39-50)57-48)42(51)37-35-33-31-29-27-25-16-14-12-10-8-6-4-2/h17-18,35,37,41-43,45-48,50-51,53-55H,3-16,19-34,36,38-40H2,1-2H3,(H,49,52)/b18-17-,37-35-/t41?,42?,43-,45+,46+,47-,48-/m1/s1
InChI Key WBOZIXHPUPAOIA-DFJDAMKWSA-N
Chemical Taxonomy
Kingdom Organic Compounds
Super Class Lipids
Class Sphingolipids
Sub Class Neutral Glycosphingolipids
Other Descriptors
  • Aliphatic Heteromonocyclic Compounds
Substituents
  • 1,2 Diol
  • Acetal
  • Alkyl Glycoside
  • Allyl Alcohol
  • Carboxamide Group
  • Ceramide
  • Fatty Acyl Glycoside
  • Glycosyl Compound
  • Hexose Monosaccharide
  • N Acyl Amine
  • O Glycosyl Compound
  • Oxane
  • Primary Alcohol
  • Saccharide
  • Secondary Alcohol
  • Secondary Carboxylic Acid Amide
Direct Parent Simple Glycosylceramides
Ontology
Status Expected and Not Quantified
Origin
  • Endogenous
  • Food
Biofunction
  • Cell signaling
  • Energy source
  • Fuel and energy storage
  • Fuel or energy source
  • Membrane component
  • Membrane integrity/stability
Application
  • Nutrients
  • Stabilizers
  • Surfactants and Emulsifiers
Cellular locations
  • Extracellular
  • Membrane
Physical Properties
State Solid
Experimental Properties
Property Value Reference
Melting Point Not Available Not Available
Boiling Point Not Available Not Available
Water Solubility Not Available Not Available
LogP Not Available Not Available
Predicted Properties
Property Value Source
Water Solubility 2.400E-04 g/L ALOGPS
LogP 9.12 ALOGPS
LogP 12.29 ChemAxon
LogS -6.53 ALOGPS
pKa (strongest acidic) 12.18 ChemAxon
pKa (strongest basic) 0.019 ChemAxon
Hydrogen Acceptor Count 8 ChemAxon
Hydrogen Donor Count 6 ChemAxon
Polar Surface Area 148.71 A2 ChemAxon
Rotatable Bond Count 40 ChemAxon
Refractivity 236.11 ChemAxon
Polarizability 103.52 ChemAxon
Formal Charge 0 ChemAxon
Physiological Charge 0 ChemAxon
Spectra
Not Available
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biofluid Locations Not Available
Tissue Location
  • All Tissues
Pathways Not Available
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease References None
Associated OMIM IDs None
DrugBank ID Not Available
DrugBank Metabolite ID Not Available
Phenol Explorer Compound ID Not Available
Phenol Explorer Metabolite ID Not Available
FoodDB ID FDB027862
KNApSAcK ID Not Available
Chemspider ID 24765748 Link_out
KEGG Compound ID C02686 Link_out
BioCyc ID Not Available
BiGG ID Not Available
Wikipedia Link Not Available
NuGOwiki Link HMDB10712 Link_out
Metagene Link HMDB10712 Link_out
METLIN ID Not Available
PubChem Compound 53480656 Link_out
PDB ID Not Available
ChEBI ID Not Available
References
Synthesis Reference Not Available
Material Safety Data Sheet (MSDS) Not Available
General References Not Available

Enzymes
Name: Galactocerebrosidase
Reactions: Not Available
Gene Name: GALC
Uniprot ID: P54803 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Arylsulfatase D
Reactions: Not Available
Gene Name: ARSD
Uniprot ID: P51689 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Sialidase-2
Reactions: Not Available
Gene Name: NEU2
Uniprot ID: Q9Y3R4 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Galactosylceramide sulfotransferase
Reactions: Not Available
Gene Name: GAL3ST1
Uniprot ID: Q99999 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Arylsulfatase A
Reactions: Not Available
Gene Name: ARSA
Uniprot ID: P15289 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Sialidase-4
Reactions: Not Available
Gene Name: NEU4
Uniprot ID: Q8WWR8 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Arylsulfatase E
Reactions: Not Available
Gene Name: ARSE
Uniprot ID: P51690 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
Reactions: Not Available
Gene Name: GBGT1
Uniprot ID: Q8N5D6 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
Reactions: Not Available
Gene Name: PIGL
Uniprot ID: Q9Y2B2 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Alpha-galactosidase A
Reactions: Not Available
Gene Name: GLA
Uniprot ID: P06280 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Sphingomyelin phosphodiesterase
Reactions: Not Available
Gene Name: SMPD1
Uniprot ID: P17405 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Ceramide glucosyltransferase
Reactions: Not Available
Gene Name: UGCG
Uniprot ID: Q16739 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Lactosylceramide 4-alpha-galactosyltransferase
Reactions: Not Available
Gene Name: A4GALT
Uniprot ID: Q9NPC4 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
Reactions: Not Available
Gene Name: PIGQ
Uniprot ID: Q9BRB3 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit A
Reactions: Not Available
Gene Name: PIGA
Uniprot ID: P37287 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit H
Reactions: Not Available
Gene Name: PIGH
Uniprot ID: Q14442 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
Reactions: Not Available
Gene Name: PIGP
Uniprot ID: P57054 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
Reactions: Not Available
Gene Name: PIGC
Uniprot ID: Q92535 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Acid ceramidase
Reactions: Not Available
Gene Name: ASAH1
Uniprot ID: Q13510 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Ectonucleotide pyrophosphatase/phosphodiesterase family member 7
Reactions: Not Available
Gene Name: ENPP7
Uniprot ID: Q6UWV6 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Sphingomyelin phosphodiesterase 2
Reactions: Not Available
Gene Name: SMPD2
Uniprot ID: O60906 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: 2-hydroxyacylsphingosine 1-beta-galactosyltransferase
Reactions: Not Available
Gene Name: UGT8
Uniprot ID: Q16880 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Collagen type IV alpha-3-binding protein
Reactions: Not Available
Gene Name: COL4A3BP
Uniprot ID: Q9Y5P4 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Ganglioside GM2 activator
Reactions: Not Available
Gene Name: GM2A
Uniprot ID: P17900 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Glucosylceramidase
Reactions: Not Available
Gene Name: GBA
Uniprot ID: P04062 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: T-cell surface glycoprotein CD1e, membrane-associated
Reactions: Not Available
Gene Name: CD1E
Uniprot ID: P15812 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Epididymal secretory protein E1
Reactions: Not Available
Gene Name: NPC2
Uniprot ID: P61916 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Ceramide synthase 1
Reactions: Not Available
Gene Name: CERS1
Uniprot ID: P27544 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Antigen-presenting glycoprotein CD1d
Reactions: Not Available
Gene Name: CD1D
Uniprot ID: P15813 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: GPI mannosyltransferase 1
Reactions: Not Available
Gene Name: PIGM
Uniprot ID: Q9H3S5 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylinositol-glycan biosynthesis class W protein
Reactions: Not Available
Gene Name: PIGW
Uniprot ID: Q7Z7B1 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylinositol-glycan biosynthesis class X protein
Reactions: Not Available
Gene Name: PIGX
Uniprot ID: Q8TBF5 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: GPI mannosyltransferase 4
Reactions: Not Available
Gene Name: PIGZ
Uniprot ID: Q86VD9 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Lactosylceramide 1,3-N-acetyl-beta-D-glucosaminyltransferase
Reactions: Not Available
Gene Name: B3GNT5
Uniprot ID: Q9BYG0 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Sphingomyelin phosphodiesterase 3
Reactions: Not Available
Gene Name: SMPD3
Uniprot ID: Q9NY59 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Beta-1,3-galactosyltransferase 5
Reactions: Not Available
Gene Name: B3GALT5
Uniprot ID: Q9Y2C3 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Beta-1,4-galactosyltransferase 6
Reactions: Not Available
Gene Name: B4GALT6
Uniprot ID: Q9UBX8 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: GPI mannosyltransferase 3
Reactions: Not Available
Gene Name: PIGB
Uniprot ID: Q92521 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylinositol-glycan biosynthesis class F protein
Reactions: Not Available
Gene Name: PIGF
Uniprot ID: Q07326 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: GPI ethanolamine phosphate transferase 2
Reactions: Not Available
Gene Name: PIGG
Uniprot ID: Q5H8A4 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: GPI ethanolamine phosphate transferase 1
Reactions: Not Available
Gene Name: PIGN
Uniprot ID: O95427 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: GPI ethanolamine phosphate transferase 3
Reactions: Not Available
Gene Name: PIGO
Uniprot ID: Q8TEQ8 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: GPI transamidase component PIG-S
Reactions: Not Available
Gene Name: PIGS
Uniprot ID: Q96S52 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: GPI transamidase component PIG-T
Reactions: Not Available
Gene Name: PIGT
Uniprot ID: Q969N2 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylinositol glycan anchor biosynthesis class U protein
Reactions: Not Available
Gene Name: PIGU
Uniprot ID: Q9H490 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: GPI mannosyltransferase 2
Reactions: Not Available
Gene Name: PIGV
Uniprot ID: Q9NUD9 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
Reactions: Not Available
Gene Name: PIGY
Uniprot ID: Q3MUY2 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Pleckstrin homology domain-containing family A member 8
Reactions: Not Available
Gene Name: PLEKHA8
Uniprot ID: Q96JA3 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Sphingomyelin phosphodiesterase 4
Reactions: Not Available
Gene Name: SMPD4
Uniprot ID: Q9NXE4 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Putative neutral ceramidase C
Reactions: Not Available
Gene Name: ASAH2C
Uniprot ID: P0C7U2 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Alkaline ceramidase 2
Reactions: Not Available
Gene Name: ACER2
Uniprot ID: Q5QJU3 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Neutral ceramidase
Reactions: Not Available
Gene Name: ASAH2
Uniprot ID: Q9NR71 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Non-lysosomal glucosylceramidase
Reactions: Not Available
Gene Name: GBA2
Uniprot ID: Q9HCG7 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: NEU1 protein
Reactions: Not Available
Gene Name: NEU1
Uniprot ID: Q5JQI0 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Alkaline ceramidase 1
Reactions: Not Available
Gene Name: ACER1
Uniprot ID: Q8TDN7 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Killer cell lectin-like receptor subfamily B member 1
Reactions: Not Available
Gene Name: KLRB1
Uniprot ID: Q12918 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Ceramide synthase 5
Reactions: Not Available
Gene Name: CERS5
Uniprot ID: Q8N5B7 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: ATP-binding cassette sub-family A member 7
Reactions: Not Available
Gene Name: ABCA7
Uniprot ID: Q8IZY2 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: GPI-anchor transamidase
Reactions: Not Available
Gene Name: PIGK
Uniprot ID: Q92643 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Glycosylphosphatidylinositol anchor attachment 1 protein
Reactions: Not Available
Gene Name: GPAA1
Uniprot ID: O43292 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Protein PLEKHA9
Reactions: Not Available
Gene Name: PLEKHA9
Uniprot ID: O95397 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Glycolipid transfer protein domain-containing protein 2
Reactions: Not Available
Gene Name: GLTPD2
Uniprot ID: A6NH11 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Putative uncharacterized protein PLEKHA8
Reactions: Not Available
Gene Name: PLEKHA8
Uniprot ID: B5MDU3 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: T-cell surface glycoprotein CD1a
Reactions: Not Available
Gene Name: CD1A
Uniprot ID: P06126 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Glycolipid transfer protein domain-containing protein 1
Reactions: Not Available
Gene Name: GLTPD1
Uniprot ID: Q5TA50 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: T-cell surface glycoprotein CD1c
Reactions: Not Available
Gene Name: CD1C
Uniprot ID: P29017 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Lipopolysaccharide-binding protein
Reactions: Not Available
Gene Name: LBP
Uniprot ID: P18428 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Putative uncharacterized protein DKFZp434L0435
Reactions: Not Available
Gene Name: DKFZp434L0435
Uniprot ID: Q9UFH6 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: T-cell surface glycoprotein CD1b
Reactions: Not Available
Gene Name: CD1B
Uniprot ID: P29016 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Glycolipid transfer protein
Reactions: Not Available
Gene Name: GLTP
Uniprot ID: Q9NZD2 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA