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Human Metabolome Database Version 3.5

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Showing metabocard for SM(d18:0/18:1(11Z)) (HMDB12088)

Record Information
Version 3.5
Creation Date 2009-03-24 10:22:10 -0600
Update Date 2013-02-08 17:28:13 -0700
HMDB ID HMDB12088
Secondary Accession Numbers None
Metabolite Identification
Common Name SM(d18:0/18:1(11Z))
Description Sphingomyelin (d18:0/18:1(11Z)) or SM(d18:0/18:1(11Z)) is a type of sphingolipid found in animal cell membranes, especially in the membranous myelin sheath which surrounds some nerve cell axons. It usually consists of phosphorylcholine and ceramide. In humans, sphingomyelin is the only membrane phospholipid not derived from glycerol. Like all sphingolipids, SPH has a ceramide core (sphingosine bonded to a fatty acid via an amide linkage). In addition it contains one polar head group, which is either phosphocholine or phosphoethanolamine. The plasma membrane of cells is highly enriched in sphingomyelin and is considered largely to be found in the exoplasmic leaflet of the cell membrane. However, there is some evidence that there may also be a sphingomyelin pool in the inner leaflet of the membrane. Moreover, neutral sphingomyelinase-2 - an enzyme that breaks down sphingomyelin into ceramide has been found to localise exclusively to the inner leaflet further suggesting that there may be sphingomyelin present there. Sphingomyelin can accumulate in a rare hereditary disease called Niemann-Pick Disease, types A and B. Niemann-Pick disease is a genetically-inherited disease caused by a deficiency in the enzyme Sphingomyelinase, which causes the accumulation of Sphingomyelin in spleen, liver, lungs, bone marrow, and the brain, causing irreversible neurological damage. SMs play a role in signal transduction. Sphingomyelins are synthesized by the transfer of phosphorylcholine from phosphatidylcholine to a ceramide in a reaction catalyzed by sphingomyelin synthase.
Structure Thumb
Download: MOL | SDF | SMILES | InChI
Display: 2D Structure | 3D Structure
Synonyms
  1. N-(9Z-Octadecenoyl)-sphinganine-1-phosphocholine
  2. Sphingomyelin
  3. Sphingomyelin (d18:0/18:1(11Z))
Chemical Formula C41H83N2O6P
Average Molecular Weight 731.0813
Monoisotopic Molecular Weight 730.59887491
IUPAC Name (2-{[(2S,3R)-3-hydroxy-2-[(11Z)-octadec-11-enamido]octadecyl phosphonato]oxy}ethyl)trimethylazanium
Traditional IUPAC Name (2-{[(2S,3R)-3-hydroxy-2-[(11Z)-octadec-11-enamido]octadecyl phosphonato]oxy}ethyl)trimethylazanium
CAS Registry Number Not Available
SMILES CCCCCCCCCCCCCCC[C@@H](O)[C@H](COP(=O)([O-])OCC[N+](C)(C)C)NC(=O)CCCCCCCCC\C=C/CCCCCC
InChI Identifier InChI=1S/C41H83N2O6P/c1-6-8-10-12-14-16-18-20-21-23-25-27-29-31-33-35-41(45)42-39(38-49-50(46,47)48-37-36-43(3,4)5)40(44)34-32-30-28-26-24-22-19-17-15-13-11-9-7-2/h16,18,39-40,44H,6-15,17,19-38H2,1-5H3,(H-,42,45,46,47)/b18-16-/t39-,40+/m0/s1
InChI Key HHAUPBIWIXBMEU-MMVRYLQTSA-N
Chemical Taxonomy
Kingdom Organic Compounds
Super Class Lipids
Class Sphingolipids
Sub Class Sphingomyelins
Other Descriptors
  • Aliphatic Acyclic Compounds
  • Organic Compounds
Substituents
  • Acyclic Alkene
  • Carboxamide Group
  • Ceramide
  • Choline
  • N Acyl Amine
  • Organic Hypophosphite
  • Organic Phosphite
  • Phosphocholine
  • Phosphoethanolamine
  • Phosphoric Acid Ester
  • Quaternary Ammonium Salt
  • Secondary Alcohol
  • Secondary Carboxylic Acid Amide
Direct Parent Sphingomyelins
Ontology
Status Expected and Not Quantified
Origin
  • Endogenous
  • Food
Biofunction
  • Cell signaling
  • Energy source
  • Fuel and energy storage
  • Fuel or energy source
  • Membrane component
  • Membrane integrity/stability
Application
  • Nutrients
  • Stabilizers
  • Surfactants and Emulsifiers
Cellular locations
  • Extracellular
  • Membrane
Physical Properties
State Solid
Experimental Properties
Property Value Reference
Melting Point Not Available Not Available
Boiling Point Not Available Not Available
Water Solubility Not Available Not Available
LogP Not Available Not Available
Predicted Properties
Property Value Source
Water Solubility 3.250E-05 g/L ALOGPS
LogP 5.41 ALOGPS
LogP 8.8 ChemAxon
LogS -7.38 ALOGPS
pKa (strongest acidic) 1.87 ChemAxon
pKa (strongest basic) 0.025 ChemAxon
Hydrogen Acceptor Count 4 ChemAxon
Hydrogen Donor Count 2 ChemAxon
Polar Surface Area 107.92 A2 ChemAxon
Rotatable Bond Count 38 ChemAxon
Refractivity 223.3 ChemAxon
Polarizability 92.7 ChemAxon
Formal Charge 0 ChemAxon
Physiological Charge 0 ChemAxon
Spectra
Not Available
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biofluid Locations Not Available
Tissue Location Not Available
Pathways Not Available
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease References None
Associated OMIM IDs None
DrugBank ID Not Available
Phenol Explorer Compound ID Not Available
Phenol Explorer Metabolite ID Not Available
FoodDB ID FDB028755
KNApSAcK ID Not Available
Chemspider ID Not Available
KEGG Compound ID C00550 Link_out
BioCyc ID Not Available
BiGG ID Not Available
Wikipedia Link Sphingomyelin Link_out
NuGOwiki Link HMDB12088 Link_out
Metagene Link HMDB12088 Link_out
METLIN ID Not Available
PubChem Compound 53481360 Link_out
PDB ID Not Available
ChEBI ID 17636 Link_out
References
Synthesis Reference Not Available
Material Safety Data Sheet (MSDS) Not Available
General References Not Available

Enzymes
Name: Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
Reactions:
    Gene Name: GBGT1
    Uniprot ID: Q8N5D6 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
    Reactions:
    • 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol + H2O = 6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol + acetate [RN:R03482 R05917]
    Gene Name: PIGL
    Uniprot ID: Q9Y2B2 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Sphingomyelin phosphodiesterase
    Reactions:
    • sphingomyelin + H2O = N-acylsphingosine + choline phosphate [RN:R02541]
    Gene Name: SMPD1
    Uniprot ID: P17405 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
    Reactions:
    • UDP-glucuronate + 3-beta-D-galactosyl-4-beta-D-galactosyl-O-beta-D-xylosylprotein = UDP + 3-beta-D-glucuronosyl-3-beta-D-galactosyl-4-beta-D-galactosyl-O- beta-D-xylosylprotein [RN:R04607 R05928]
    Gene Name: B3GAT1
    Uniprot ID: Q9P2W7 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
    Reactions:
    • UDP-N-acetyl-D-glucosamine + 1-phosphatidyl-1D-myo-inositol = UDP + 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol [RN:R02654 R05916]
    Gene Name: PIGQ
    Uniprot ID: Q9BRB3 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit A
    Reactions:
    • UDP-N-acetyl-D-glucosamine + 1-phosphatidyl-1D-myo-inositol = UDP + 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol [RN:R02654 R05916]
    Gene Name: PIGA
    Uniprot ID: P37287 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit H
    Reactions:
    • UDP-N-acetyl-D-glucosamine + 1-phosphatidyl-1D-myo-inositol = UDP + 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol [RN:R02654 R05916]
    Gene Name: PIGH
    Uniprot ID: Q14442 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
    Reactions:
    • UDP-N-acetyl-D-glucosamine + 1-phosphatidyl-1D-myo-inositol = UDP + 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol [RN:R02654 R05916]
    Gene Name: PIGP
    Uniprot ID: P57054 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
    Reactions:
    • UDP-N-acetyl-D-glucosamine + 1-phosphatidyl-1D-myo-inositol = UDP + 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol [RN:R02654 R05916]
    Gene Name: PIGC
    Uniprot ID: Q92535 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Ectonucleotide pyrophosphatase/phosphodiesterase family member 7
    Reactions:
    • sphingomyelin + H2O = N-acylsphingosine + choline phosphate [RN:R02541]
    Gene Name: ENPP7
    Uniprot ID: Q6UWV6 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Sphingomyelin phosphodiesterase 2
    Reactions:
    • sphingomyelin + H2O = N-acylsphingosine + choline phosphate [RN:R02541]
    Gene Name: SMPD2
    Uniprot ID: O60906 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Proactivator polypeptide
    Reactions:
      Gene Name: PSAP
      Uniprot ID: P07602 Link_out
      Protein Sequence: FASTA
      Gene Sequence: FASTA
      Name: Ganglioside GM2 activator
      Reactions:
        Gene Name: GM2A
        Uniprot ID: P17900 Link_out
        Protein Sequence: FASTA
        Gene Sequence: FASTA
        Name: T-cell surface glycoprotein CD1e, membrane-associated
        Reactions:
          Gene Name: CD1E
          Uniprot ID: P15812 Link_out
          Protein Sequence: FASTA
          Gene Sequence: FASTA
          Name: Epididymal secretory protein E1
          Reactions:
            Gene Name: NPC2
            Uniprot ID: P61916 Link_out
            Protein Sequence: FASTA
            Gene Sequence: FASTA
            Name: Antigen-presenting glycoprotein CD1d
            Reactions:
              Gene Name: CD1D
              Uniprot ID: P15813 Link_out
              Protein Sequence: FASTA
              Gene Sequence: FASTA
              Name: GPI mannosyltransferase 1
              Reactions:
                Gene Name: PIGM
                Uniprot ID: Q9H3S5 Link_out
                Protein Sequence: FASTA
                Gene Sequence: FASTA
                Name: Phosphatidylinositol-glycan biosynthesis class W protein
                Reactions:
                  Gene Name: PIGW
                  Uniprot ID: Q7Z7B1 Link_out
                  Protein Sequence: FASTA
                  Gene Sequence: FASTA
                  Name: Phosphatidylinositol-glycan biosynthesis class X protein
                  Reactions:
                    Gene Name: PIGX
                    Uniprot ID: Q8TBF5 Link_out
                    Protein Sequence: FASTA
                    Gene Sequence: FASTA
                    Name: GPI mannosyltransferase 4
                    Reactions:
                      Gene Name: PIGZ
                      Uniprot ID: Q86VD9 Link_out
                      Protein Sequence: FASTA
                      Gene Sequence: FASTA
                      Name: 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase delta-3
                      Reactions:
                      • 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate + H2O = 1D-myo-inositol 1,4,5-trisphosphate + diacylglycerol
                      Gene Name: PLCD3
                      Uniprot ID: Q8N3E9 Link_out
                      Protein Sequence: FASTA
                      Gene Sequence: FASTA
                      Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
                      Reactions:
                        Gene Name: B3GNT5
                        Uniprot ID: Q9BYG0 Link_out
                        Protein Sequence: FASTA
                        Gene Sequence: FASTA
                        Name: Sphingomyelin phosphodiesterase 3
                        Reactions:
                        • sphingomyelin + H2O = N-acylsphingosine + choline phosphate [RN:R02541]
                        Gene Name: SMPD3
                        Uniprot ID: Q9NY59 Link_out
                        Protein Sequence: FASTA
                        Gene Sequence: FASTA
                        Name: Beta-1,3-galactosyltransferase 5
                        Reactions:
                          Gene Name: B3GALT5
                          Uniprot ID: Q9Y2C3 Link_out
                          Protein Sequence: FASTA
                          Gene Sequence: FASTA
                          Name: GPI mannosyltransferase 3
                          Reactions:
                            Gene Name: PIGB
                            Uniprot ID: Q92521 Link_out
                            Protein Sequence: FASTA
                            Gene Sequence: FASTA
                            Name: Phosphatidylinositol-glycan biosynthesis class F protein
                            Reactions:
                              Gene Name: PIGF
                              Uniprot ID: Q07326 Link_out
                              Protein Sequence: FASTA
                              Gene Sequence: FASTA
                              Name: GPI ethanolamine phosphate transferase 2
                              Reactions:
                                Gene Name: PIGG
                                Uniprot ID: Q5H8A4 Link_out
                                Protein Sequence: FASTA
                                Gene Sequence: FASTA
                                Name: GPI ethanolamine phosphate transferase 1
                                Reactions:
                                  Gene Name: PIGN
                                  Uniprot ID: O95427 Link_out
                                  Protein Sequence: FASTA
                                  Gene Sequence: FASTA
                                  Name: GPI ethanolamine phosphate transferase 3
                                  Reactions:
                                    Gene Name: PIGO
                                    Uniprot ID: Q8TEQ8 Link_out
                                    Protein Sequence: FASTA
                                    Gene Sequence: FASTA
                                    Name: GPI transamidase component PIG-S
                                    Reactions:
                                      Gene Name: PIGS
                                      Uniprot ID: Q96S52 Link_out
                                      Protein Sequence: FASTA
                                      Gene Sequence: FASTA
                                      Name: GPI transamidase component PIG-T
                                      Reactions:
                                        Gene Name: PIGT
                                        Uniprot ID: Q969N2 Link_out
                                        Protein Sequence: FASTA
                                        Gene Sequence: FASTA
                                        Name: Phosphatidylinositol glycan anchor biosynthesis class U protein
                                        Reactions:
                                          Gene Name: PIGU
                                          Uniprot ID: Q9H490 Link_out
                                          Protein Sequence: FASTA
                                          Gene Sequence: FASTA
                                          Name: GPI mannosyltransferase 2
                                          Reactions:
                                            Gene Name: PIGV
                                            Uniprot ID: Q9NUD9 Link_out
                                            Protein Sequence: FASTA
                                            Gene Sequence: FASTA
                                            Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
                                            Reactions:
                                              Gene Name: PIGY
                                              Uniprot ID: Q3MUY2 Link_out
                                              Protein Sequence: FASTA
                                              Gene Sequence: FASTA
                                              Name: Pleckstrin homology domain-containing family A member 8
                                              Reactions:
                                                Gene Name: PLEKHA8
                                                Uniprot ID: Q96JA3 Link_out
                                                Protein Sequence: FASTA
                                                Gene Sequence: FASTA
                                                Name: Sphingomyelin phosphodiesterase 4
                                                Reactions:
                                                • sphingomyelin + H2O = N-acylsphingosine + choline phosphate [RN:R02541]
                                                Gene Name: SMPD4
                                                Uniprot ID: Q9NXE4 Link_out
                                                Protein Sequence: FASTA
                                                Gene Sequence: FASTA
                                                Name: Non-lysosomal glucosylceramidase
                                                Reactions:
                                                • D-glucosyl-N-acylsphingosine + H2O = D-glucose + N-acylsphingosine [RN:R01498]
                                                Gene Name: GBA2
                                                Uniprot ID: Q9HCG7 Link_out
                                                Protein Sequence: FASTA
                                                Gene Sequence: FASTA
                                                Name: Sphingomyelin synthase-related protein 1
                                                Reactions:
                                                  Gene Name: SAMD8
                                                  Uniprot ID: Q96LT4 Link_out
                                                  Protein Sequence: FASTA
                                                  Gene Sequence: FASTA
                                                  Name: GPI-anchor transamidase
                                                  Reactions:
                                                    Gene Name: PIGK
                                                    Uniprot ID: Q92643 Link_out
                                                    Protein Sequence: FASTA
                                                    Gene Sequence: FASTA
                                                    Name: Glycosylphosphatidylinositol anchor attachment 1 protein
                                                    Reactions:
                                                      Gene Name: GPAA1
                                                      Uniprot ID: O43292 Link_out
                                                      Protein Sequence: FASTA
                                                      Gene Sequence: FASTA
                                                      Name: Protein PLEKHA9
                                                      Reactions:
                                                        Gene Name: PLEKHA9
                                                        Uniprot ID: O95397 Link_out
                                                        Protein Sequence: FASTA
                                                        Gene Sequence: FASTA
                                                        Name: Glycolipid transfer protein domain-containing protein 2
                                                        Reactions:
                                                          Gene Name: GLTPD2
                                                          Uniprot ID: A6NH11 Link_out
                                                          Protein Sequence: FASTA
                                                          Gene Sequence: FASTA
                                                          Name: Putative uncharacterized protein PLEKHA8
                                                          Reactions:
                                                            Gene Name: PLEKHA8
                                                            Uniprot ID: B5MDU3 Link_out
                                                            Protein Sequence: FASTA
                                                            Gene Sequence: FASTA
                                                            Name: T-cell surface glycoprotein CD1a
                                                            Reactions:
                                                              Gene Name: CD1A
                                                              Uniprot ID: P06126 Link_out
                                                              Protein Sequence: FASTA
                                                              Gene Sequence: FASTA
                                                              Name: Glycolipid transfer protein domain-containing protein 1
                                                              Reactions:
                                                                Gene Name: GLTPD1
                                                                Uniprot ID: Q5TA50 Link_out
                                                                Protein Sequence: FASTA
                                                                Gene Sequence: FASTA
                                                                Name: T-cell surface glycoprotein CD1c
                                                                Reactions:
                                                                  Gene Name: CD1C
                                                                  Uniprot ID: P29017 Link_out
                                                                  Protein Sequence: FASTA
                                                                  Gene Sequence: FASTA
                                                                  Name: Lipopolysaccharide-binding protein
                                                                  Reactions:
                                                                    Gene Name: LBP
                                                                    Uniprot ID: P18428 Link_out
                                                                    Protein Sequence: FASTA
                                                                    Gene Sequence: FASTA
                                                                    Name: Putative uncharacterized protein DKFZp434L0435
                                                                    Reactions:
                                                                      Gene Name: DKFZp434L0435
                                                                      Uniprot ID: Q9UFH6 Link_out
                                                                      Protein Sequence: FASTA
                                                                      Gene Sequence: FASTA
                                                                      Name: T-cell surface glycoprotein CD1b
                                                                      Reactions:
                                                                        Gene Name: CD1B
                                                                        Uniprot ID: P29016 Link_out
                                                                        Protein Sequence: FASTA
                                                                        Gene Sequence: FASTA
                                                                        Name: Glycolipid transfer protein
                                                                        Reactions:
                                                                          Gene Name: GLTP
                                                                          Uniprot ID: Q9NZD2 Link_out
                                                                          Protein Sequence: FASTA
                                                                          Gene Sequence: FASTA