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Human Metabolome Database Version 3.5

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Showing metabocard for Phytosphingosine-1-P (HMDB12280)

Record Information
Version 3.5
Creation Date 2009-04-06 10:22:15 -0600
Update Date 2013-02-08 17:28:41 -0700
HMDB ID HMDB12280
Secondary Accession Numbers None
Metabolite Identification
Common Name Phytosphingosine-1-P
Description Phytosphingosine-1-P is an intermediate in sphingolipid metabolism pathway. It is the enzymatic oxidation product of 4-hydroxysphinganine. Sphingolipids are essential components of the plasma membrane in all eukaryotic cells. S. cerevisiae cells make three complex sphingolipids: inositol-phosphoceramide (IPC), mannose-inositol-phosphoceramide (MIPC), and mannosyl-diinositol-phosphorylceramide (M(IP)2C) [ Dickson02 ]. In the yeast plasma membrane sphingolipids concentrate with ergosterol to form lipid rafts, specialized membrane microdomains implicated in a variety of cellular processes, including sorting of membrane proteins and lipids, as well as organizing and regulating signaling cascades [ Bagnat02 ]. Intermediates in sphingolipid biosynthesis have been shown to play important roles as signaling molecules and growth regulators. Sphingolipid long chain bases (LCBs), dihydrosphingosine (DHS) and phytosphingosine (PHS), have been implicated as secondary messengers in signaling pathways that regulate heat stress response. Other intermediates, phytoceramide and long-chain base phosphates (LCBPs), have been shown to be components of tightly-controlled ceramide/LCBP rheostat, which regulates cell growth. Since phosphoinositol-containing sphingolipids are unique to fungi, the sphingolipid biosynthesis pathway is considered a target for antifungal drugs.
Structure Thumb
Download: MOL | SDF | SMILES | InChI
Display: 2D Structure | 3D Structure
Synonyms
  1. PHS-1-Phosphate
Chemical Formula C18H40NO6P
Average Molecular Weight 397.4871
Monoisotopic Molecular Weight 397.259324529
IUPAC Name {[(2R,3R,4R)-2-amino-3,4-dihydroxyoctadecyl]oxy}phosphonic acid
Traditional IUPAC Name [(2R,3R,4R)-2-amino-3,4-dihydroxyoctadecyl]oxyphosphonic acid
CAS Registry Number Not Available
SMILES CCCCCCCCCCCCCC[C@@H](O)[C@H](O)[C@H](N)COP(O)(O)=O
InChI Identifier InChI=1S/C18H40NO6P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-17(20)18(21)16(19)15-25-26(22,23)24/h16-18,20-21H,2-15,19H2,1H3,(H2,22,23,24)/t16-,17-,18-/m1/s1
InChI Key AYGOSKULTISFCW-KZNAEPCWSA-N
Chemical Taxonomy
Kingdom Organic Compounds
Super Class Lipids
Class Sphingolipids
Sub Class N/A
Other Descriptors
  • Aliphatic Acyclic Compounds
Substituents
  • 1,2 Aminoalcohol
  • 1,2 Diol
  • 1,3 Aminoalcohol
  • Organic Hypophosphite
  • Organic Phosphite
  • Phosphoethanolamine
  • Phosphoric Acid Ester
  • Primary Aliphatic Amine (Alkylamine)
  • Secondary Alcohol
Direct Parent Sphingolipids
Ontology
Status Expected and Not Quantified
Origin
  • Endogenous
  • Food
Biofunction
  • Cell signaling
  • Fuel and energy storage
  • Fuel or energy source
  • Membrane integrity/stability
Application
  • Nutrients
  • Stabilizers
  • Surfactants and Emulsifiers
Cellular locations
  • Extracellular
  • Membrane
Physical Properties
State Solid
Experimental Properties
Property Value Reference
Melting Point Not Available Not Available
Boiling Point Not Available Not Available
Water Solubility Not Available Not Available
LogP Not Available Not Available
Predicted Properties
Property Value Source
Water Solubility 0.017 g/L ALOGPS
LogP 3.01 ALOGPS
LogP 2.56 ChemAxon
LogS -4.37 ALOGPS
pKa (strongest acidic) 1.51 ChemAxon
pKa (strongest basic) 9.37 ChemAxon
Hydrogen Acceptor Count 6 ChemAxon
Hydrogen Donor Count 5 ChemAxon
Polar Surface Area 133.24 A2 ChemAxon
Rotatable Bond Count 18 ChemAxon
Refractivity 103.16 ChemAxon
Polarizability 45.73 ChemAxon
Formal Charge 0 ChemAxon
Physiological Charge -1 ChemAxon
Spectra
Not Available
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biofluid Locations Not Available
Tissue Location Not Available
Pathways Not Available
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease References None
Associated OMIM IDs None
DrugBank ID Not Available
Phenol Explorer Compound ID Not Available
Phenol Explorer Metabolite ID Not Available
FoodDB ID FDB028911
KNApSAcK ID Not Available
Chemspider ID Not Available
KEGG Compound ID Not Available
BioCyc ID PHTYOSPHINGOSINE-1-P Link_out
BiGG ID Not Available
Wikipedia Link Not Available
NuGOwiki Link HMDB12280 Link_out
Metagene Link HMDB12280 Link_out
METLIN ID Not Available
PubChem Compound 53481399 Link_out
PDB ID Not Available
ChEBI ID Not Available
References
Synthesis Reference Not Available
Material Safety Data Sheet (MSDS) Not Available
General References Not Available

Enzymes
Name: Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
Reactions:
    Gene Name: GBGT1
    Uniprot ID: Q8N5D6 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase
    Reactions:
    • 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol + H2O = 6-(alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol + acetate [RN:R03482 R05917]
    Gene Name: PIGL
    Uniprot ID: Q9Y2B2 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
    Reactions:
    • UDP-N-acetyl-D-glucosamine + 1-phosphatidyl-1D-myo-inositol = UDP + 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol [RN:R02654 R05916]
    Gene Name: PIGQ
    Uniprot ID: Q9BRB3 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit A
    Reactions:
    • UDP-N-acetyl-D-glucosamine + 1-phosphatidyl-1D-myo-inositol = UDP + 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol [RN:R02654 R05916]
    Gene Name: PIGA
    Uniprot ID: P37287 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit H
    Reactions:
    • UDP-N-acetyl-D-glucosamine + 1-phosphatidyl-1D-myo-inositol = UDP + 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol [RN:R02654 R05916]
    Gene Name: PIGH
    Uniprot ID: Q14442 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit P
    Reactions:
    • UDP-N-acetyl-D-glucosamine + 1-phosphatidyl-1D-myo-inositol = UDP + 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol [RN:R02654 R05916]
    Gene Name: PIGP
    Uniprot ID: P57054 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit C
    Reactions:
    • UDP-N-acetyl-D-glucosamine + 1-phosphatidyl-1D-myo-inositol = UDP + 6-(N-acetyl-alpha-D-glucosaminyl)-1-phosphatidyl-1D-myo-inositol [RN:R02654 R05916]
    Gene Name: PIGC
    Uniprot ID: Q92535 Link_out
    Protein Sequence: FASTA
    Gene Sequence: FASTA
    Name: Ganglioside GM2 activator
    Reactions:
      Gene Name: GM2A
      Uniprot ID: P17900 Link_out
      Protein Sequence: FASTA
      Gene Sequence: FASTA
      Name: T-cell surface glycoprotein CD1e, membrane-associated
      Reactions:
        Gene Name: CD1E
        Uniprot ID: P15812 Link_out
        Protein Sequence: FASTA
        Gene Sequence: FASTA
        Name: Epididymal secretory protein E1
        Reactions:
          Gene Name: NPC2
          Uniprot ID: P61916 Link_out
          Protein Sequence: FASTA
          Gene Sequence: FASTA
          Name: Antigen-presenting glycoprotein CD1d
          Reactions:
            Gene Name: CD1D
            Uniprot ID: P15813 Link_out
            Protein Sequence: FASTA
            Gene Sequence: FASTA
            Name: GPI mannosyltransferase 1
            Reactions:
              Gene Name: PIGM
              Uniprot ID: Q9H3S5 Link_out
              Protein Sequence: FASTA
              Gene Sequence: FASTA
              Name: Phosphatidylinositol-glycan biosynthesis class W protein
              Reactions:
                Gene Name: PIGW
                Uniprot ID: Q7Z7B1 Link_out
                Protein Sequence: FASTA
                Gene Sequence: FASTA
                Name: Phosphatidylinositol-glycan biosynthesis class X protein
                Reactions:
                  Gene Name: PIGX
                  Uniprot ID: Q8TBF5 Link_out
                  Protein Sequence: FASTA
                  Gene Sequence: FASTA
                  Name: GPI mannosyltransferase 4
                  Reactions:
                    Gene Name: PIGZ
                    Uniprot ID: Q86VD9 Link_out
                    Protein Sequence: FASTA
                    Gene Sequence: FASTA
                    Name: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5
                    Reactions:
                      Gene Name: B3GNT5
                      Uniprot ID: Q9BYG0 Link_out
                      Protein Sequence: FASTA
                      Gene Sequence: FASTA
                      Name: Beta-1,3-galactosyltransferase 5
                      Reactions:
                        Gene Name: B3GALT5
                        Uniprot ID: Q9Y2C3 Link_out
                        Protein Sequence: FASTA
                        Gene Sequence: FASTA
                        Name: GPI mannosyltransferase 3
                        Reactions:
                          Gene Name: PIGB
                          Uniprot ID: Q92521 Link_out
                          Protein Sequence: FASTA
                          Gene Sequence: FASTA
                          Name: Phosphatidylinositol-glycan biosynthesis class F protein
                          Reactions:
                            Gene Name: PIGF
                            Uniprot ID: Q07326 Link_out
                            Protein Sequence: FASTA
                            Gene Sequence: FASTA
                            Name: GPI ethanolamine phosphate transferase 2
                            Reactions:
                              Gene Name: PIGG
                              Uniprot ID: Q5H8A4 Link_out
                              Protein Sequence: FASTA
                              Gene Sequence: FASTA
                              Name: GPI ethanolamine phosphate transferase 1
                              Reactions:
                                Gene Name: PIGN
                                Uniprot ID: O95427 Link_out
                                Protein Sequence: FASTA
                                Gene Sequence: FASTA
                                Name: GPI ethanolamine phosphate transferase 3
                                Reactions:
                                  Gene Name: PIGO
                                  Uniprot ID: Q8TEQ8 Link_out
                                  Protein Sequence: FASTA
                                  Gene Sequence: FASTA
                                  Name: GPI transamidase component PIG-S
                                  Reactions:
                                    Gene Name: PIGS
                                    Uniprot ID: Q96S52 Link_out
                                    Protein Sequence: FASTA
                                    Gene Sequence: FASTA
                                    Name: GPI transamidase component PIG-T
                                    Reactions:
                                      Gene Name: PIGT
                                      Uniprot ID: Q969N2 Link_out
                                      Protein Sequence: FASTA
                                      Gene Sequence: FASTA
                                      Name: Phosphatidylinositol glycan anchor biosynthesis class U protein
                                      Reactions:
                                        Gene Name: PIGU
                                        Uniprot ID: Q9H490 Link_out
                                        Protein Sequence: FASTA
                                        Gene Sequence: FASTA
                                        Name: GPI mannosyltransferase 2
                                        Reactions:
                                          Gene Name: PIGV
                                          Uniprot ID: Q9NUD9 Link_out
                                          Protein Sequence: FASTA
                                          Gene Sequence: FASTA
                                          Name: Phosphatidylinositol N-acetylglucosaminyltransferase subunit Y
                                          Reactions:
                                            Gene Name: PIGY
                                            Uniprot ID: Q3MUY2 Link_out
                                            Protein Sequence: FASTA
                                            Gene Sequence: FASTA
                                            Name: Pleckstrin homology domain-containing family A member 8
                                            Reactions:
                                              Gene Name: PLEKHA8
                                              Uniprot ID: Q96JA3 Link_out
                                              Protein Sequence: FASTA
                                              Gene Sequence: FASTA
                                              Name: Non-lysosomal glucosylceramidase
                                              Reactions:
                                              • D-glucosyl-N-acylsphingosine + H2O = D-glucose + N-acylsphingosine [RN:R01498]
                                              Gene Name: GBA2
                                              Uniprot ID: Q9HCG7 Link_out
                                              Protein Sequence: FASTA
                                              Gene Sequence: FASTA
                                              Name: GPI-anchor transamidase
                                              Reactions:
                                                Gene Name: PIGK
                                                Uniprot ID: Q92643 Link_out
                                                Protein Sequence: FASTA
                                                Gene Sequence: FASTA
                                                Name: Glycosylphosphatidylinositol anchor attachment 1 protein
                                                Reactions:
                                                  Gene Name: GPAA1
                                                  Uniprot ID: O43292 Link_out
                                                  Protein Sequence: FASTA
                                                  Gene Sequence: FASTA
                                                  Name: Protein PLEKHA9
                                                  Reactions:
                                                    Gene Name: PLEKHA9
                                                    Uniprot ID: O95397 Link_out
                                                    Protein Sequence: FASTA
                                                    Gene Sequence: FASTA
                                                    Name: Glycolipid transfer protein domain-containing protein 2
                                                    Reactions:
                                                      Gene Name: GLTPD2
                                                      Uniprot ID: A6NH11 Link_out
                                                      Protein Sequence: FASTA
                                                      Gene Sequence: FASTA
                                                      Name: Putative uncharacterized protein PLEKHA8
                                                      Reactions:
                                                        Gene Name: PLEKHA8
                                                        Uniprot ID: B5MDU3 Link_out
                                                        Protein Sequence: FASTA
                                                        Gene Sequence: FASTA
                                                        Name: T-cell surface glycoprotein CD1a
                                                        Reactions:
                                                          Gene Name: CD1A
                                                          Uniprot ID: P06126 Link_out
                                                          Protein Sequence: FASTA
                                                          Gene Sequence: FASTA
                                                          Name: Glycolipid transfer protein domain-containing protein 1
                                                          Reactions:
                                                            Gene Name: GLTPD1
                                                            Uniprot ID: Q5TA50 Link_out
                                                            Protein Sequence: FASTA
                                                            Gene Sequence: FASTA
                                                            Name: T-cell surface glycoprotein CD1c
                                                            Reactions:
                                                              Gene Name: CD1C
                                                              Uniprot ID: P29017 Link_out
                                                              Protein Sequence: FASTA
                                                              Gene Sequence: FASTA
                                                              Name: Lipopolysaccharide-binding protein
                                                              Reactions:
                                                                Gene Name: LBP
                                                                Uniprot ID: P18428 Link_out
                                                                Protein Sequence: FASTA
                                                                Gene Sequence: FASTA
                                                                Name: Putative uncharacterized protein DKFZp434L0435
                                                                Reactions:
                                                                  Gene Name: DKFZp434L0435
                                                                  Uniprot ID: Q9UFH6 Link_out
                                                                  Protein Sequence: FASTA
                                                                  Gene Sequence: FASTA
                                                                  Name: T-cell surface glycoprotein CD1b
                                                                  Reactions:
                                                                    Gene Name: CD1B
                                                                    Uniprot ID: P29016 Link_out
                                                                    Protein Sequence: FASTA
                                                                    Gene Sequence: FASTA
                                                                    Name: Glycolipid transfer protein
                                                                    Reactions:
                                                                      Gene Name: GLTP
                                                                      Uniprot ID: Q9NZD2 Link_out
                                                                      Protein Sequence: FASTA
                                                                      Gene Sequence: FASTA