| Record Information |
|---|
| Version | 5.0 |
|---|
| Status | Expected but not Quantified |
|---|
| Creation Date | 2009-11-30 15:51:25 UTC |
|---|
| Update Date | 2023-02-21 17:17:57 UTC |
|---|
| HMDB ID | HMDB0013233 |
|---|
| Secondary Accession Numbers | |
|---|
| Metabolite Identification |
|---|
| Common Name | Gamma-delta-Dioxovaleric acid |
|---|
| Description | Gamma-delta-Dioxovaleric acid, also known as 4-oxoglutarate semialdehyde or 4,5-dioxopentanoate, belongs to the class of organic compounds known as gamma-keto acids and derivatives. These are organic compounds containing an aldehyde substituted with a keto group on the C4 carbon atom. Gamma-delta-Dioxovaleric acid is a primary metabolite. Primary metabolites are metabolically or physiologically essential metabolites. They are directly involved in an organism’s growth, development or reproduction. Based on a literature review very few articles have been published on Gamma-delta-Dioxovaleric acid. |
|---|
| Structure | InChI=1S/C5H6O4/c6-3-4(7)1-2-5(8)9/h3H,1-2H2,(H,8,9) |
|---|
| Synonyms | | Value | Source |
|---|
| 4,5-Dioxopentanoate | ChEBI | | 4-Oxoglutarate semialdehyde | ChEBI | | 4,5-Dioxopentanoic acid | Generator | | 4-Oxoglutaric acid semialdehyde | Generator | | g-delta-Dioxovalerate | Generator | | g-delta-Dioxovaleric acid | Generator | | gamma-delta-Dioxovalerate | Generator | | Γ-δ-dioxovalerate | Generator | | Γ-δ-dioxovaleric acid | Generator | | 4,5-Dioxovaleric acid | MeSH | | gamma,delta-Dioxovalerate | MeSH | | g-δ-dioxovalerate | Generator, HMDB | | g-δ-dioxovaleric acid | Generator, HMDB |
|
|---|
| Chemical Formula | C5H6O4 |
|---|
| Average Molecular Weight | 130.0987 |
|---|
| Monoisotopic Molecular Weight | 130.02660868 |
|---|
| IUPAC Name | 4,5-dioxopentanoic acid |
|---|
| Traditional Name | 4,5-dioxopentanoic acid |
|---|
| CAS Registry Number | Not Available |
|---|
| SMILES | OC(=O)CCC(=O)C=O |
|---|
| InChI Identifier | InChI=1S/C5H6O4/c6-3-4(7)1-2-5(8)9/h3H,1-2H2,(H,8,9) |
|---|
| InChI Key | YHUFRVYVNKGICT-UHFFFAOYSA-N |
|---|
| Chemical Taxonomy |
|---|
| Description | Belongs to the class of organic compounds known as gamma-keto acids and derivatives. These are organic compounds containing an aldehyde substituted with a keto group on the C4 carbon atom. |
|---|
| Kingdom | Organic compounds |
|---|
| Super Class | Organic acids and derivatives |
|---|
| Class | Keto acids and derivatives |
|---|
| Sub Class | Gamma-keto acids and derivatives |
|---|
| Direct Parent | Gamma-keto acids and derivatives |
|---|
| Alternative Parents | |
|---|
| Substituents | - Gamma-keto acid
- Short-chain keto acid
- Alpha-ketoaldehyde
- Ketone
- Monocarboxylic acid or derivatives
- Carboxylic acid
- Carboxylic acid derivative
- Organic oxygen compound
- Organic oxide
- Hydrocarbon derivative
- Organooxygen compound
- Carbonyl group
- Aldehyde
- Aliphatic acyclic compound
|
|---|
| Molecular Framework | Aliphatic acyclic compounds |
|---|
| External Descriptors | |
|---|
| Ontology |
|---|
| Physiological effect | Not Available |
|---|
| Disposition | |
|---|
| Process | Not Available |
|---|
| Role | Not Available |
|---|
| Physical Properties |
|---|
| State | Solid |
|---|
| Experimental Molecular Properties | | Property | Value | Reference |
|---|
| Melting Point | Not Available | Not Available | | Boiling Point | Not Available | Not Available | | Water Solubility | Not Available | Not Available | | LogP | Not Available | Not Available |
|
|---|
| Experimental Chromatographic Properties | Not Available |
|---|
| Predicted Molecular Properties | |
|---|
| Predicted Chromatographic Properties | Predicted Collision Cross SectionsPredicted Retention Times Underivatized| Chromatographic Method | Retention Time | Reference |
|---|
| Measured using a Waters Acquity ultraperformance liquid chromatography (UPLC) ethylene-bridged hybrid (BEH) C18 column (100 mm × 2.1 mm; 1.7 μmparticle diameter). Predicted by Afia on May 17, 2022. Predicted by Afia on May 17, 2022. | 2.08 minutes | 32390414 | | Predicted by Siyang on May 30, 2022 | 8.8989 minutes | 33406817 | | Predicted by Siyang using ReTip algorithm on June 8, 2022 | 3.33 minutes | 32390414 | | AjsUoB = Accucore 150 Amide HILIC with 10mM Ammonium Formate, 0.1% Formic Acid | 104.3 seconds | 40023050 | | Fem_Long = Waters ACQUITY UPLC HSS T3 C18 with Water:MeOH and 0.1% Formic Acid | 961.1 seconds | 40023050 | | Fem_Lipids = Ascentis Express C18 with (60:40 water:ACN):(90:10 IPA:ACN) and 10mM NH4COOH + 0.1% Formic Acid | 322.2 seconds | 40023050 | | Life_Old = Waters ACQUITY UPLC BEH C18 with Water:(20:80 acetone:ACN) and 0.1% Formic Acid | 86.6 seconds | 40023050 | | Life_New = RP Waters ACQUITY UPLC HSS T3 C18 with Water:(30:70 MeOH:ACN) and 0.1% Formic Acid | 205.6 seconds | 40023050 | | RIKEN = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 66.9 seconds | 40023050 | | Eawag_XBridgeC18 = XBridge C18 3.5u 2.1x50 mm with Water:MeOH and 0.1% Formic Acid | 245.1 seconds | 40023050 | | BfG_NTS_RP1 =Agilent Zorbax Eclipse Plus C18 (2.1 mm x 150 mm, 3.5 um) with Water:ACN and 0.1% Formic Acid | 300.6 seconds | 40023050 | | HILIC_BDD_2 = Merck SeQuant ZIC-HILIC with ACN(0.1% formic acid):water(16 mM ammonium formate) | 148.5 seconds | 40023050 | | UniToyama_Atlantis = RP Waters Atlantis T3 (2.1 x 150 mm, 5 um) with ACN:Water and 0.1% Formic Acid | 617.4 seconds | 40023050 | | BDD_C18 = Hypersil Gold 1.9µm C18 with Water:ACN and 0.1% Formic Acid | 156.9 seconds | 40023050 | | UFZ_Phenomenex = Kinetex Core-Shell C18 2.6 um, 3.0 x 100 mm, Phenomenex with Water:MeOH and 0.1% Formic Acid | 809.2 seconds | 40023050 | | SNU_RIKEN_POS = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 210.9 seconds | 40023050 | | RPMMFDA = Waters ACQUITY UPLC BEH C18 with Water:ACN and 0.1% Formic Acid | 236.9 seconds | 40023050 | | MTBLS87 = Merck SeQuant ZIC-pHILIC column with ACN:Water and :ammonium carbonate | 640.5 seconds | 40023050 | | KI_GIAR_zic_HILIC_pH2_7 = Merck SeQuant ZIC-HILIC with ACN:Water and 0.1% FA | 252.0 seconds | 40023050 | | Meister zic-pHILIC pH9.3 = Merck SeQuant ZIC-pHILIC column with ACN:Water 5mM NH4Ac pH9.3 and 5mM ammonium acetate in water | 290.4 seconds | 40023050 |
Predicted Kovats Retention IndicesUnderivatizedDerivatized| Derivative Name / Structure | SMILES | Kovats RI Value | Column Type | Reference |
|---|
| Gamma-delta-Dioxovaleric acid,1TMS,isomer #1 | C[Si](C)(C)OC(=O)CCC(=O)C=O | 1326.1 | Semi standard non polar | 33892256 | | Gamma-delta-Dioxovaleric acid,1TMS,isomer #2 | C[Si](C)(C)OC(C=O)=CCC(=O)O | 1400.7 | Semi standard non polar | 33892256 | | Gamma-delta-Dioxovaleric acid,2TMS,isomer #1 | C[Si](C)(C)OC(=O)CC=C(C=O)O[Si](C)(C)C | 1514.8 | Semi standard non polar | 33892256 | | Gamma-delta-Dioxovaleric acid,2TMS,isomer #1 | C[Si](C)(C)OC(=O)CC=C(C=O)O[Si](C)(C)C | 1413.2 | Standard non polar | 33892256 | | Gamma-delta-Dioxovaleric acid,2TMS,isomer #1 | C[Si](C)(C)OC(=O)CC=C(C=O)O[Si](C)(C)C | 1571.6 | Standard polar | 33892256 | | Gamma-delta-Dioxovaleric acid,1TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)CCC(=O)C=O | 1581.9 | Semi standard non polar | 33892256 | | Gamma-delta-Dioxovaleric acid,1TBDMS,isomer #2 | CC(C)(C)[Si](C)(C)OC(C=O)=CCC(=O)O | 1680.6 | Semi standard non polar | 33892256 | | Gamma-delta-Dioxovaleric acid,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)CC=C(C=O)O[Si](C)(C)C(C)(C)C | 1998.1 | Semi standard non polar | 33892256 | | Gamma-delta-Dioxovaleric acid,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)CC=C(C=O)O[Si](C)(C)C(C)(C)C | 1845.7 | Standard non polar | 33892256 | | Gamma-delta-Dioxovaleric acid,2TBDMS,isomer #1 | CC(C)(C)[Si](C)(C)OC(=O)CC=C(C=O)O[Si](C)(C)C(C)(C)C | 1842.3 | Standard polar | 33892256 |
|
|---|
| GC-MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
|---|
| Predicted GC-MS | Predicted GC-MS Spectrum - Gamma-delta-Dioxovaleric acid GC-MS (Non-derivatized) - 70eV, Positive | splash10-0a4i-9100000000-fc2cf6a68672c069c40d | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Gamma-delta-Dioxovaleric acid GC-MS (1 TMS) - 70eV, Positive | splash10-00dl-7900000000-dcbbfde08d90d09b23d1 | 2017-10-06 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Gamma-delta-Dioxovaleric acid GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum | | Predicted GC-MS | Predicted GC-MS Spectrum - Gamma-delta-Dioxovaleric acid GC-MS (Non-derivatized) - 70eV, Positive | Not Available | 2021-10-12 | Wishart Lab | View Spectrum |
MS/MS Spectra| Spectrum Type | Description | Splash Key | Deposition Date | Source | View |
|---|
| Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 10V, Positive-QTOF | splash10-03di-4900000000-080c9829311e7ab02b5d | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 20V, Positive-QTOF | splash10-03y1-9300000000-792d9d0b3040e058f709 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 40V, Positive-QTOF | splash10-0a4i-9000000000-fdbc51824a0926161972 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 10V, Negative-QTOF | splash10-004i-1900000000-7c344a5cd45bc790e0a5 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 20V, Negative-QTOF | splash10-0r2a-9800000000-66c52bb7dba441550970 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 40V, Negative-QTOF | splash10-0a4i-9000000000-6ebdf3e036a8949b9262 | 2017-09-01 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 10V, Negative-QTOF | splash10-01ri-7900000000-51ce480395e9691cfa02 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 20V, Negative-QTOF | splash10-0a4i-9000000000-64247810f585e9632354 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 40V, Negative-QTOF | splash10-0a4l-9000000000-f48888a7d79528a136f3 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 10V, Positive-QTOF | splash10-06rl-9300000000-a9ac543d860aebfc6344 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 20V, Positive-QTOF | splash10-0a4u-9000000000-6fa1912ca17ad42fd1c5 | 2021-09-24 | Wishart Lab | View Spectrum | | Predicted LC-MS/MS | Predicted LC-MS/MS Spectrum - Gamma-delta-Dioxovaleric acid 40V, Positive-QTOF | splash10-052f-9000000000-f952b2bfabcaede48037 | 2021-09-24 | Wishart Lab | View Spectrum |
NMR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
|---|
| Predicted 1D NMR | 13C NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 100 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 1000 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 200 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 300 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 400 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 500 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 600 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 700 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 800 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 13C NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum | | Predicted 1D NMR | 1H NMR Spectrum (1D, 900 MHz, D2O, predicted) | 2021-09-25 | Wishart Lab | View Spectrum |
IR Spectra| Spectrum Type | Description | Deposition Date | Source | View |
|---|
| Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M-H]-) | 2023-02-03 | FELIX lab | View Spectrum | | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+H]+) | 2023-02-03 | FELIX lab | View Spectrum | | Predicted IR Spectrum | IR Ion Spectrum (Predicted IRIS Spectrum, Adduct: [M+Na]+) | 2023-02-03 | FELIX lab | View Spectrum |
|
|---|