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Human Metabolome Database Version 3.5

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Showing metabocard for PC(o-16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) (HMDB13409)

Record Information
Version 3.5
Creation Date 2010-03-18 10:07:05 -0600
Update Date 2013-02-08 17:30:08 -0700
HMDB ID HMDB13409
Secondary Accession Numbers None
Metabolite Identification
Common Name PC(o-16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z))
Description PC(o-16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)) is a phosphatidylcholine (PC or GPCho). It is a glycerophospholipid in which a phosphorylcholine moiety occupies a glycerol substitution site. As is the case with diacylglycerols, glycerophosphocholines can have many different combinations of fatty acids of varying lengths and saturation attached at the C-1 and C-2 positions. Fatty acids containing 16, 18 and 20 carbons are the most common. PC(o-16:0/22:6(4Z,7Z,10Z,13Z,16Z,19Z)), in particular, consists of one chain of Palmityl alcohol at the C-1 position and one chain of docosahexaenoic acid at the C-2 position. The Palmityl alcohol moiety is derived from animal fats and vegetable oils, while the docosahexaenoic acid moiety is derived from fish oils. Phospholipids, are ubiquitous in nature and are key components of the lipid bilayer of cells, as well as being involved in metabolism and signaling. While most phospholipids have a saturated fatty acid on C-1 and an unsaturated fatty acid on C-2 of the glycerol backbone, the fatty acid distribution at the C-1 and C-2 positions of glycerol within phospholipids is continually in flux, owing to phospholipid degradation and the continuous phospholipid remodeling that occurs while these molecules are in membranes. PCs can be synthesized via three different routes. In one route, choline is activated first by phosphorylation and then by coupling to CDP prior to attachment to phosphatidic acid. PCs can also synthesized by the addition of choline to CDP-activated 1,2-diacylglycerol. A third route to PC synthesis involves the conversion of either PS or PE to PC.
Structure Thumb
Download: MOL | SDF | SMILES | InChI
Display: 2D Structure | 3D Structure
Synonyms
  1. 1-Palmityl-2-docosahexaenoyl-sn-glycero-3-phosphocholine
  2. GPCho(16:0/22:6)
  3. GPCho(16:0/22:6n3)
  4. GPCho(16:0/22:6w3)
  5. GPCho(38:6)
  6. Lecithin
  7. PC ae C38:6
  8. PC(16:0/22:6)
  9. PC(16:0/22:6n3)
  10. PC(16:0/22:6w3)
  11. PC(38:6)
  12. PC(O-38:6)
  13. Phosphatidylcholine(16:0/22:6)
  14. Phosphatidylcholine(16:0/22:6n3)
  15. Phosphatidylcholine(16:0/22:6w3)
  16. Phosphatidylcholine(38:6)
Chemical Formula C46H82NO7P
Average Molecular Weight 792.1195
Monoisotopic Molecular Weight 791.582890495
IUPAC Name (2-{[(2R)-2-[(4Z,7Z,10Z,13Z,16Z,19Z)-docosa-4,7,10,13,16,19-hexaenoyloxy]-3-(hexadecyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium
Traditional IUPAC Name (2-{[(2R)-2-[(4Z,7Z,10Z,13Z,16Z,19Z)-docosa-4,7,10,13,16,19-hexaenoyloxy]-3-(hexadecyloxy)propyl phosphonato]oxy}ethyl)trimethylazanium
CAS Registry Number Not Available
SMILES CCCCCCCCCCCCCCCCOC[C@]([H])(COP([O-])(=O)OCC[N+](C)(C)C)OC(=O)CC\C=C/C\C=C/C\C=C/C\C=C/C\C=C/C\C=C/CC
InChI Identifier InChI=1S/C46H82NO7P/c1-6-8-10-12-14-16-18-20-22-23-24-25-26-27-29-31-33-35-37-39-46(48)54-45(44-53-55(49,50)52-42-40-47(3,4)5)43-51-41-38-36-34-32-30-28-21-19-17-15-13-11-9-7-2/h8,10,14,16,20,22,24-25,27,29,33,35,45H,6-7,9,11-13,15,17-19,21,23,26,28,30-32,34,36-44H2,1-5H3/b10-8-,16-14-,22-20-,25-24-,29-27-,35-33-/t45-/m1/s1
InChI Key QQQQNYAHSSIZBU-HIQXTUQZSA-N
Chemical Taxonomy
Kingdom Organic Compounds
Super Class Lipids
Class Glycerophospholipids
Sub Class Glycerophosphocholines
Other Descriptors
  • Aliphatic Acyclic Compounds
Substituents
  • Acyclic Alkene
  • Carboxylic Acid Ester
  • Choline
  • Dialkyl Ether
  • Fatty Acid Ester
  • Organic Hypophosphite
  • Organic Phosphite
  • Phosphocholine
  • Phosphoethanolamine
  • Phosphoric Acid Ester
  • Quaternary Ammonium Salt
Direct Parent Other Glycerophosphocholines
Ontology
Status Detected and Quantified
Origin
  • Endogenous
  • Food
Biofunction
  • Cell signaling
  • Energy source
  • Fuel and energy storage
  • Fuel or energy source
  • Membrane component
  • Membrane integrity/stability
Application
  • Nutrients
  • Stabilizers
  • Surfactants and Emulsifiers
Cellular locations
  • Extracellular
  • Membrane
Physical Properties
State Solid
Experimental Properties
Property Value Reference
Melting Point Not Available Not Available
Boiling Point Not Available Not Available
Water Solubility Not Available Not Available
LogP Not Available Not Available
Predicted Properties
Property Value Source
Water Solubility 3.710E-05 g/L ALOGPS
LogP 6.29 ALOGPS
LogP 8.99 ChemAxon
LogS -7.36 ALOGPS
pKa (strongest acidic) 1.86 ChemAxon
pKa (strongest basic) -4.1 ChemAxon
Hydrogen Acceptor Count 4 ChemAxon
Hydrogen Donor Count 0 ChemAxon
Polar Surface Area 94.12 A2 ChemAxon
Rotatable Bond Count 40 ChemAxon
Refractivity 250.42 ChemAxon
Polarizability 95.56 ChemAxon
Formal Charge 0 ChemAxon
Physiological Charge 0 ChemAxon
Spectra
Not Available
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biofluid Locations
  • Urine
Tissue Location
  • All Tissues
Pathways Not Available
Normal Concentrations
Biofluid Status Value Age Sex Condition Reference
Urine Detected and Quantified
0.0065 (0.0027-0.017) umol/mmol creatinine Adult (>18 years old) Both Comment Normal
  • Bouatra, S. ...
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease References None
Associated OMIM IDs None
DrugBank ID Not Available
DrugBank Metabolite ID Not Available
Phenol Explorer Compound ID Not Available
Phenol Explorer Metabolite ID Not Available
FoodDB ID FDB029409
KNApSAcK ID Not Available
Chemspider ID 24958571 Link_out
KEGG Compound ID Not Available
BioCyc ID Not Available
BiGG ID Not Available
Wikipedia Link Not Available
NuGOwiki Link HMDB13409 Link_out
Metagene Link HMDB13409 Link_out
METLIN ID Not Available
PubChem Compound 16759366 Link_out
PDB ID Not Available
ChEBI ID 1077065 Link_out
References
Synthesis Reference Not Available
Material Safety Data Sheet (MSDS) Not Available
General References Not Available

Enzymes
Name: Calcium-dependent phospholipase A2
Reactions: Not Available
Gene Name: PLA2G5
Uniprot ID: P39877 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Group IIF secretory phospholipase A2
Reactions: Not Available
Gene Name: PLA2G2F
Uniprot ID: Q9BZM2 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Cytosolic phospholipase A2
Reactions: Not Available
Gene Name: PLA2G4A
Uniprot ID: P47712 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipase A2
Reactions: Not Available
Gene Name: PLA2G1B
Uniprot ID: P04054 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Group 10 secretory phospholipase A2
Reactions: Not Available
Gene Name: PLA2G10
Uniprot ID: O15496 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Group IIE secretory phospholipase A2
Reactions: Not Available
Gene Name: PLA2G2E
Uniprot ID: Q9NZK7 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Group XIIA secretory phospholipase A2
Reactions: Not Available
Gene Name: PLA2G12A
Uniprot ID: Q9BZM1 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylcholine-sterol acyltransferase
Reactions: Not Available
Gene Name: LCAT
Uniprot ID: P04180 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipase A2, membrane associated
Reactions: Not Available
Gene Name: PLA2G2A
Uniprot ID: P14555 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Group IID secretory phospholipase A2
Reactions: Not Available
Gene Name: PLA2G2D
Uniprot ID: Q9UNK4 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipase D2
Reactions: Not Available
Gene Name: PLD2
Uniprot ID: O14939 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipase D1
Reactions: Not Available
Gene Name: PLD1
Uniprot ID: Q13393 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Group 3 secretory phospholipase A2
Reactions: Not Available
Gene Name: PLA2G3
Uniprot ID: Q9NZ20 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylcholine:ceramide cholinephosphotransferase 2
Reactions: Not Available
Gene Name: SGMS2
Uniprot ID: Q8NHU3 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylcholine:ceramide cholinephosphotransferase 1
Reactions: Not Available
Gene Name: SGMS1
Uniprot ID: Q86VZ5 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase IG
Reactions: Not Available
Gene Name: ATP11C
Uniprot ID: Q8NB49 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase IH
Reactions: Not Available
Gene Name: ATP11A
Uniprot ID: P98196 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase VA
Reactions: Not Available
Gene Name: ATP10A
Uniprot ID: O60312 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase IC
Reactions: Not Available
Gene Name: ATP8B1
Uniprot ID: O43520 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase IIA
Reactions: Not Available
Gene Name: ATP9A
Uniprot ID: O75110 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase VD
Reactions: Not Available
Gene Name: ATP10D
Uniprot ID: Q9P241 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase IB
Reactions: Not Available
Gene Name: ATP8A2
Uniprot ID: Q9NTI2 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase IA
Reactions: Not Available
Gene Name: ATP8A1
Uniprot ID: Q9Y2Q0 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase IM
Reactions: Not Available
Gene Name: ATP8B4
Uniprot ID: Q8TF62 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase IF
Reactions: Not Available
Gene Name: ATP11B
Uniprot ID: Q9Y2G3 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase IK
Reactions: Not Available
Gene Name: ATP8B3
Uniprot ID: O60423 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Lecithin retinol acyltransferase
Reactions: Not Available
Gene Name: LRAT
Uniprot ID: O95237 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipid scramblase 1
Reactions: Not Available
Gene Name: PLSCR1
Uniprot ID: O15162 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipid transfer protein
Reactions: Not Available
Gene Name: PLTP
Uniprot ID: P55058 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Cholinephosphotransferase 1
Reactions: Not Available
Gene Name: CHPT1
Uniprot ID: Q8WUD6 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Choline/ethanolaminephosphotransferase 1
Reactions: Not Available
Gene Name: CEPT1
Uniprot ID: Q9Y6K0 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Lysophospholipid acyltransferase 5
Reactions: Not Available
Gene Name: LPCAT3
Uniprot ID: Q6P1A2 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Putative inactive group IIC secretory phospholipase A2
Reactions: Not Available
Gene Name: PLA2G2C
Uniprot ID: Q5R387 Link_out
Protein Sequence: FASTA
Name: Lysophosphatidylcholine acyltransferase 1
Reactions: Not Available
Gene Name: LPCAT1
Uniprot ID: Q8NF37 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Lysophosphatidylcholine acyltransferase 2
Reactions: Not Available
Gene Name: LPCAT2
Uniprot ID: Q7L5N7 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipase D3
Reactions: Not Available
Gene Name: PLD3
Uniprot ID: Q8IV08 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipase D4
Reactions: Not Available
Gene Name: PLD4
Uniprot ID: Q96BZ4 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phosphatidylcholine transfer protein
Reactions: Not Available
Gene Name: PCTP
Uniprot ID: Q9UKL6 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipid scramblase 2
Reactions: Not Available
Gene Name: PLSCR2
Uniprot ID: Q9NRY7 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipid scramblase 3
Reactions: Not Available
Gene Name: PLSCR3
Uniprot ID: Q9NRY6 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipid scramblase 4
Reactions: Not Available
Gene Name: PLSCR4
Uniprot ID: Q9NRQ2 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Phospholipid scramblase family member 5
Reactions: Not Available
Gene Name: PLSCR5
Uniprot ID: A0PG75 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase VB
Reactions: Not Available
Gene Name: ATP10B
Uniprot ID: O94823 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA
Name: Probable phospholipid-transporting ATPase ID
Reactions: Not Available
Gene Name: ATP8B2
Uniprot ID: P98198 Link_out
Protein Sequence: FASTA
Gene Sequence: FASTA