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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:30:32 UTC
Update Date2022-03-07 02:52:10 UTC
HMDB IDHMDB0029459
Secondary Accession Numbers
  • HMDB29459
Metabolite Identification
Common NameXanthoxylol
DescriptionXanthoxylol belongs to the class of organic compounds known as furanoid lignans. These are lignans with a structure that contains either a tetrahydrofuran ring, a furan ring, or a furofuan ring system, that arises from the joining of the two phenylpropanoid units. Based on a literature review very few articles have been published on Xanthoxylol.
Structure
Data?1582753421
Synonyms
ValueSource
Xanthoxylol, (1R-(1alpha,3alpha,4beta,6aalpha))-isomerHMDB
Xanthoxylol, (1R-(1alpha,3aalpha,4alpha,6aalpha))-isomerHMDB
Xanthoxylol, (1S-(1alpha,3aalpha,4alpha,6aalpha))-isomerHMDB
XanthoxylolMeSH
Chemical FormulaC20H20O6
Average Molecular Weight356.3692
Monoisotopic Molecular Weight356.125988372
IUPAC Name4-[4-(2H-1,3-benzodioxol-5-yl)-hexahydrofuro[3,4-c]furan-1-yl]-2-methoxyphenol
Traditional Name4-[4-(2H-1,3-benzodioxol-5-yl)-hexahydrofuro[3,4-c]furan-1-yl]-2-methoxyphenol
CAS Registry Number54983-95-8
SMILES
COC1=C(O)C=CC(=C1)C1OCC2C1COC2C1=CC2=C(OCO2)C=C1
InChI Identifier
InChI=1S/C20H20O6/c1-22-17-6-11(2-4-15(17)21)19-13-8-24-20(14(13)9-23-19)12-3-5-16-18(7-12)26-10-25-16/h2-7,13-14,19-21H,8-10H2,1H3
InChI KeyVBIRCRCPHNUJAS-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as furanoid lignans. These are lignans with a structure that contains either a tetrahydrofuran ring, a furan ring, or a furofuan ring system, that arises from the joining of the two phenylpropanoid units.
KingdomOrganic compounds
Super ClassLignans, neolignans and related compounds
ClassFuranoid lignans
Sub ClassNot Available
Direct ParentFuranoid lignans
Alternative Parents
Substituents
  • Furanoid lignan
  • Furofuran lignan skeleton
  • Methoxyphenol
  • Benzodioxole
  • Anisole
  • Phenoxy compound
  • Furofuran
  • Phenol ether
  • Methoxybenzene
  • Phenol
  • 1-hydroxy-2-unsubstituted benzenoid
  • Alkyl aryl ether
  • Benzenoid
  • Monocyclic benzene moiety
  • Tetrahydrofuran
  • Acetal
  • Ether
  • Dialkyl ether
  • Organoheterocyclic compound
  • Oxacycle
  • Organooxygen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point140 - 142 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.033 g/LALOGPS
logP2.41ALOGPS
logP2.36ChemAxon
logS-4ALOGPS
pKa (Strongest Acidic)9.91ChemAxon
pKa (Strongest Basic)-3.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area66.38 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity92.42 m³·mol⁻¹ChemAxon
Polarizability36.95 ųChemAxon
Number of Rings5ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+182.87731661259
DarkChem[M-H]-181.24131661259
DeepCCS[M+H]+183.79830932474
DeepCCS[M-H]-181.40730932474
DeepCCS[M-2H]-215.74430932474
DeepCCS[M+Na]+191.6630932474
AllCCS[M+H]+186.532859911
AllCCS[M+H-H2O]+183.332859911
AllCCS[M+NH4]+189.432859911
AllCCS[M+Na]+190.332859911
AllCCS[M-H]-189.632859911
AllCCS[M+Na-2H]-189.432859911
AllCCS[M+HCOO]-189.232859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
XanthoxylolCOC1=C(O)C=CC(=C1)C1OCC2C1COC2C1=CC2=C(OCO2)C=C13998.9Standard polar33892256
XanthoxylolCOC1=C(O)C=CC(=C1)C1OCC2C1COC2C1=CC2=C(OCO2)C=C12927.3Standard non polar33892256
XanthoxylolCOC1=C(O)C=CC(=C1)C1OCC2C1COC2C1=CC2=C(OCO2)C=C13211.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Xanthoxylol,1TMS,isomer #1COC1=CC(C2OCC3C(C4=CC=C5OCOC5=C4)OCC23)=CC=C1O[Si](C)(C)C3074.0Semi standard non polar33892256
Xanthoxylol,1TBDMS,isomer #1COC1=CC(C2OCC3C(C4=CC=C5OCOC5=C4)OCC23)=CC=C1O[Si](C)(C)C(C)(C)C3348.9Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Xanthoxylol GC-MS (Non-derivatized) - 70eV, Positivesplash10-004i-1964000000-b923c02bbd764f5a6d982017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Xanthoxylol GC-MS (1 TMS) - 70eV, Positivesplash10-0002-2794100000-b92caa0b624b63d5df162017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Xanthoxylol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Xanthoxylol GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 10V, Positive-QTOFsplash10-0a4i-0019000000-376a43a85fa5035f94ed2015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 20V, Positive-QTOFsplash10-0a4i-0069000000-5c2a864618a9a703efc42015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 40V, Positive-QTOFsplash10-0udr-7900000000-4822173b5c87eb97e6412015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 10V, Negative-QTOFsplash10-0a4i-0109000000-733eed202d45cb9e1d702015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 20V, Negative-QTOFsplash10-0a4i-0129000000-22d1f36ee3a5107b85d52015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 40V, Negative-QTOFsplash10-0f6t-3941000000-063a699456a7bf3bf9352015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 10V, Positive-QTOFsplash10-0a4i-0009000000-33915d2d8d0d276fb0f02021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 20V, Positive-QTOFsplash10-0a4i-0129000000-9837fa47f6313744cfa12021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 40V, Positive-QTOFsplash10-0550-0659000000-d8cb2f6568528942b8a12021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 10V, Negative-QTOFsplash10-0a4i-0009000000-0a6526e745d11b23421e2021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 20V, Negative-QTOFsplash10-0a4i-0109000000-1ef721b8c1c34f4050992021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Xanthoxylol 40V, Negative-QTOFsplash10-0zfr-2439000000-e33a3084a55521aa463c2021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Extracellular
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB000580
KNApSAcK IDC00038062
Chemspider ID115586
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound130679
PDB IDNot Available
ChEBI ID172581
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .