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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 18:48:02 UTC
Update Date2022-03-07 02:53:57 UTC
HMDB IDHMDB0034026
Secondary Accession Numbers
  • HMDB34026
Metabolite Identification
Common NameGlyceollidin I
DescriptionGlyceollidin I belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids. Thus, glyceollidin I is considered to be a flavonoid lipid molecule. Glyceollidin I is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Outside of the human body, glyceollidin I has been detected, but not quantified in, pulses and soy beans. This could make glyceollidin I a potential biomarker for the consumption of these foods.
Structure
Data?1563862497
SynonymsNot Available
Chemical FormulaC20H20O5
Average Molecular Weight340.3698
Monoisotopic Molecular Weight340.13107375
IUPAC Name6-(3-methylbut-2-en-1-yl)-8,17-dioxatetracyclo[8.7.0.0²,⁷.0¹¹,¹⁶]heptadeca-2(7),3,5,11(16),12,14-hexaene-5,10,14-triol
Traditional Name6-(3-methylbut-2-en-1-yl)-8,17-dioxatetracyclo[8.7.0.0²,⁷.0¹¹,¹⁶]heptadeca-2(7),3,5,11(16),12,14-hexaene-5,10,14-triol
CAS Registry Number77979-21-6
SMILES
CC(C)=CCC1=C(O)C=CC2=C1OCC1(O)C2OC2=C1C=CC(O)=C2
InChI Identifier
InChI=1S/C20H20O5/c1-11(2)3-5-13-16(22)8-6-14-18(13)24-10-20(23)15-7-4-12(21)9-17(15)25-19(14)20/h3-4,6-9,19,21-23H,5,10H2,1-2H3
InChI KeyNLHMQOCIFRDSNU-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassIsoflavonoids
Sub ClassFuranoisoflavonoids
Direct ParentPterocarpans
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.055 g/LALOGPS
logP2.8ALOGPS
logP3.44ChemAxon
logS-3.8ALOGPS
pKa (Strongest Acidic)9ChemAxon
pKa (Strongest Basic)-4.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area79.15 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity93.91 m³·mol⁻¹ChemAxon
Polarizability36.15 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+181.13331661259
DarkChem[M-H]-176.67431661259
DeepCCS[M+H]+178.01530932474
DeepCCS[M-H]-175.65730932474
DeepCCS[M-2H]-209.38630932474
DeepCCS[M+Na]+184.61430932474
AllCCS[M+H]+182.932859911
AllCCS[M+H-H2O]+179.632859911
AllCCS[M+NH4]+185.932859911
AllCCS[M+Na]+186.732859911
AllCCS[M-H]-185.832859911
AllCCS[M+Na-2H]-185.332859911
AllCCS[M+HCOO]-185.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Glyceollidin ICC(C)=CCC1=C(O)C=CC2=C1OCC1(O)C2OC2=C1C=CC(O)=C24394.0Standard polar33892256
Glyceollidin ICC(C)=CCC1=C(O)C=CC2=C1OCC1(O)C2OC2=C1C=CC(O)=C22882.0Standard non polar33892256
Glyceollidin ICC(C)=CCC1=C(O)C=CC2=C1OCC1(O)C2OC2=C1C=CC(O)=C23195.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Glyceollidin I,1TMS,isomer #1CC(C)=CCC1=C(O[Si](C)(C)C)C=CC2=C1OCC1(O)C3=CC=C(O)C=C3OC212938.0Semi standard non polar33892256
Glyceollidin I,1TMS,isomer #2CC(C)=CCC1=C(O)C=CC2=C1OCC1(O[Si](C)(C)C)C3=CC=C(O)C=C3OC212904.4Semi standard non polar33892256
Glyceollidin I,1TMS,isomer #3CC(C)=CCC1=C(O)C=CC2=C1OCC1(O)C3=CC=C(O[Si](C)(C)C)C=C3OC212961.5Semi standard non polar33892256
Glyceollidin I,2TMS,isomer #1CC(C)=CCC1=C(O[Si](C)(C)C)C=CC2=C1OCC1(O[Si](C)(C)C)C3=CC=C(O)C=C3OC212887.6Semi standard non polar33892256
Glyceollidin I,2TMS,isomer #2CC(C)=CCC1=C(O[Si](C)(C)C)C=CC2=C1OCC1(O)C3=CC=C(O[Si](C)(C)C)C=C3OC212972.7Semi standard non polar33892256
Glyceollidin I,2TMS,isomer #3CC(C)=CCC1=C(O)C=CC2=C1OCC1(O[Si](C)(C)C)C3=CC=C(O[Si](C)(C)C)C=C3OC212906.8Semi standard non polar33892256
Glyceollidin I,3TMS,isomer #1CC(C)=CCC1=C(O[Si](C)(C)C)C=CC2=C1OCC1(O[Si](C)(C)C)C3=CC=C(O[Si](C)(C)C)C=C3OC212935.2Semi standard non polar33892256
Glyceollidin I,1TBDMS,isomer #1CC(C)=CCC1=C(O[Si](C)(C)C(C)(C)C)C=CC2=C1OCC1(O)C3=CC=C(O)C=C3OC213153.2Semi standard non polar33892256
Glyceollidin I,1TBDMS,isomer #2CC(C)=CCC1=C(O)C=CC2=C1OCC1(O[Si](C)(C)C(C)(C)C)C3=CC=C(O)C=C3OC213157.6Semi standard non polar33892256
Glyceollidin I,1TBDMS,isomer #3CC(C)=CCC1=C(O)C=CC2=C1OCC1(O)C3=CC=C(O[Si](C)(C)C(C)(C)C)C=C3OC213176.3Semi standard non polar33892256
Glyceollidin I,2TBDMS,isomer #1CC(C)=CCC1=C(O[Si](C)(C)C(C)(C)C)C=CC2=C1OCC1(O[Si](C)(C)C(C)(C)C)C3=CC=C(O)C=C3OC213348.6Semi standard non polar33892256
Glyceollidin I,2TBDMS,isomer #2CC(C)=CCC1=C(O[Si](C)(C)C(C)(C)C)C=CC2=C1OCC1(O)C3=CC=C(O[Si](C)(C)C(C)(C)C)C=C3OC213397.1Semi standard non polar33892256
Glyceollidin I,2TBDMS,isomer #3CC(C)=CCC1=C(O)C=CC2=C1OCC1(O[Si](C)(C)C(C)(C)C)C3=CC=C(O[Si](C)(C)C(C)(C)C)C=C3OC213374.2Semi standard non polar33892256
Glyceollidin I,3TBDMS,isomer #1CC(C)=CCC1=C(O[Si](C)(C)C(C)(C)C)C=CC2=C1OCC1(O[Si](C)(C)C(C)(C)C)C3=CC=C(O[Si](C)(C)C(C)(C)C)C=C3OC213575.0Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Glyceollidin I GC-MS (Non-derivatized) - 70eV, Positivesplash10-0096-5839000000-858d6245a651ec174c6d2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Glyceollidin I GC-MS (3 TMS) - 70eV, Positivesplash10-0006-3010390000-1195b109f7343397fed52017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Glyceollidin I GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 10V, Positive-QTOFsplash10-0006-2329000000-eafdbada92f1c59cfbb82015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 20V, Positive-QTOFsplash10-07bu-6789000000-923dae28aadb6ce117982015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 40V, Positive-QTOFsplash10-00ke-9300000000-9ae9a7af70832cab4fb32015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 10V, Negative-QTOFsplash10-000i-0009000000-8d8d16c9bdc7898a43112015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 20V, Negative-QTOFsplash10-000i-0229000000-bdf81e8c85444048ffc42015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 40V, Negative-QTOFsplash10-052p-3921000000-34e5cdedb144c673dde32015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 10V, Negative-QTOFsplash10-000i-0009000000-fd63e399cebf431bd2892021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 20V, Negative-QTOFsplash10-000i-0109000000-4df7a126b32562d141792021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 40V, Negative-QTOFsplash10-052f-6964000000-76cea0f0dffb086a60452021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 10V, Positive-QTOFsplash10-0006-0039000000-33472be30a9a3301cfa32021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 20V, Positive-QTOFsplash10-000i-0090000000-3b8954e746a946c58bac2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollidin I 40V, Positive-QTOFsplash10-00kk-2910000000-b13698404b1005f22ca62021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB012264
KNApSAcK IDC00009689
Chemspider ID24843043
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound44257483
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .