Hmdb loader
Survey
You are using an unsupported browser. Please upgrade your browser to a newer version to get the best experience on Human Metabolome Database.
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 19:04:06 UTC
Update Date2022-03-07 02:54:02 UTC
HMDB IDHMDB0034264
Secondary Accession Numbers
  • HMDB34264
Metabolite Identification
Common NameGlyceollin IV
DescriptionGlyceollin IV belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids. Thus, glyceollin IV is considered to be a flavonoid lipid molecule. Glyceollin IV is a very hydrophobic molecule, practically insoluble (in water), and relatively neutral. Outside of the human body, glyceollin IV has been detected, but not quantified in, a few different foods, such as fats and oils, pulses, and soy beans. This could make glyceollin IV a potential biomarker for the consumption of these foods.
Structure
Data?1563862536
Synonyms
ValueSource
6a,9-Dihydroxy-3-methoxy-2-prenylpterocarpanHMDB
Chemical FormulaC21H22O5
Average Molecular Weight354.3964
Monoisotopic Molecular Weight354.146723814
IUPAC Name5-methoxy-4-(3-methylbut-2-en-1-yl)-8,17-dioxatetracyclo[8.7.0.0²,⁷.0¹¹,¹⁶]heptadeca-2(7),3,5,11(16),12,14-hexaene-10,14-diol
Traditional Name5-methoxy-4-(3-methylbut-2-en-1-yl)-8,17-dioxatetracyclo[8.7.0.0²,⁷.0¹¹,¹⁶]heptadeca-2(7),3,5,11(16),12,14-hexaene-10,14-diol
CAS Registry Number69393-94-8
SMILES
COC1=CC2=C(C=C1CC=C(C)C)C1OC3=C(C=CC(O)=C3)C1(O)CO2
InChI Identifier
InChI=1S/C21H22O5/c1-12(2)4-5-13-8-15-18(10-17(13)24-3)25-11-21(23)16-7-6-14(22)9-19(16)26-20(15)21/h4,6-10,20,22-23H,5,11H2,1-3H3
InChI KeyWOKIXZBYDPTMJD-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as pterocarpans. These are benzo-pyrano-furano-benzene compounds, containing the 6H-[1]benzofuro[3,2-c]chromene skeleton. They are derivatives of isoflavonoids.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassIsoflavonoids
Sub ClassFuranoisoflavonoids
Direct ParentPterocarpans
Alternative ParentsNot Available
SubstituentsNot Available
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.041 g/LALOGPS
logP3.23ALOGPS
logP3.58ChemAxon
logS-3.9ALOGPS
pKa (Strongest Acidic)9.4ChemAxon
pKa (Strongest Basic)-4.1ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area68.15 ŲChemAxon
Rotatable Bond Count3ChemAxon
Refractivity98.39 m³·mol⁻¹ChemAxon
Polarizability38.56 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+186.08831661259
DarkChem[M-H]-181.2931661259
DeepCCS[M+H]+187.69930932474
DeepCCS[M-H]-185.33630932474
DeepCCS[M-2H]-219.63330932474
DeepCCS[M+Na]+194.93530932474
AllCCS[M+H]+186.532859911
AllCCS[M+H-H2O]+183.332859911
AllCCS[M+NH4]+189.432859911
AllCCS[M+Na]+190.232859911
AllCCS[M-H]-190.432859911
AllCCS[M+Na-2H]-190.132859911
AllCCS[M+HCOO]-190.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Glyceollin IVCOC1=CC2=C(C=C1CC=C(C)C)C1OC3=C(C=CC(O)=C3)C1(O)CO24309.1Standard polar33892256
Glyceollin IVCOC1=CC2=C(C=C1CC=C(C)C)C1OC3=C(C=CC(O)=C3)C1(O)CO22859.9Standard non polar33892256
Glyceollin IVCOC1=CC2=C(C=C1CC=C(C)C)C1OC3=C(C=CC(O)=C3)C1(O)CO23174.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Glyceollin IV,1TMS,isomer #1COC1=CC2=C(C=C1CC=C(C)C)C1OC3=CC(O[Si](C)(C)C)=CC=C3C1(O)CO23047.9Semi standard non polar33892256
Glyceollin IV,1TMS,isomer #2COC1=CC2=C(C=C1CC=C(C)C)C1OC3=CC(O)=CC=C3C1(O[Si](C)(C)C)CO22963.9Semi standard non polar33892256
Glyceollin IV,2TMS,isomer #1COC1=CC2=C(C=C1CC=C(C)C)C1OC3=CC(O[Si](C)(C)C)=CC=C3C1(O[Si](C)(C)C)CO22998.2Semi standard non polar33892256
Glyceollin IV,1TBDMS,isomer #1COC1=CC2=C(C=C1CC=C(C)C)C1OC3=CC(O[Si](C)(C)C(C)(C)C)=CC=C3C1(O)CO23286.4Semi standard non polar33892256
Glyceollin IV,1TBDMS,isomer #2COC1=CC2=C(C=C1CC=C(C)C)C1OC3=CC(O)=CC=C3C1(O[Si](C)(C)C(C)(C)C)CO23209.5Semi standard non polar33892256
Glyceollin IV,2TBDMS,isomer #1COC1=CC2=C(C=C1CC=C(C)C)C1OC3=CC(O[Si](C)(C)C(C)(C)C)=CC=C3C1(O[Si](C)(C)C(C)(C)C)CO23471.7Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Glyceollin IV GC-MS (Non-derivatized) - 70eV, Positivesplash10-000i-2339000000-2fdb6878fc8bdf2a507a2017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Glyceollin IV GC-MS (2 TMS) - 70eV, Positivesplash10-003r-2120900000-edfe0cf3412992f4a0cd2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Glyceollin IV GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 10V, Positive-QTOFsplash10-0a4i-2209000000-467ff670cf3951a248bc2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 20V, Positive-QTOFsplash10-0axr-4619000000-8240368038d16c88e0bf2016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 40V, Positive-QTOFsplash10-02td-9500000000-d9c6ec10795e4baad5d62016-08-02Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 10V, Negative-QTOFsplash10-0udi-0009000000-469aef1a1d8300acefde2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 20V, Negative-QTOFsplash10-0udi-0209000000-cf9d2669bd85d4acdfed2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 40V, Negative-QTOFsplash10-000j-2922000000-3a700b2499d36599d57e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 10V, Negative-QTOFsplash10-0udi-0009000000-76b5b50d40f0609ef17e2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 20V, Negative-QTOFsplash10-0udi-0009000000-a939043880098e4c55ec2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 40V, Negative-QTOFsplash10-0f79-2925000000-0b59e24a8a08e395031a2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 10V, Positive-QTOFsplash10-0a4i-0019000000-173124112c360b52e8342021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 20V, Positive-QTOFsplash10-0a4j-0069000000-ebdf59a3ce31669244ca2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Glyceollin IV 40V, Positive-QTOFsplash10-014j-4924000000-3b6f4ac95bff744859012021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB012590
KNApSAcK IDC00009690
Chemspider ID4476501
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5317742
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .