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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 20:24:26 UTC
Update Date2022-03-07 02:54:30 UTC
HMDB IDHMDB0035428
Secondary Accession Numbers
  • HMDB35428
Metabolite Identification
Common NameLicoagrochalcone C
DescriptionLicoagrochalcone C belongs to the class of organic compounds known as retrochalcones. These are a form of normal chalcones that are structurally distinguished by the lack of oxygen functionalities at the C2'- and C6'-positions. Thus, licoagrochalcone C is considered to be a flavonoid. Licoagrochalcone C has been detected, but not quantified in, several different foods, such as green tea, herbs and spices, black tea, herbal tea, and teas (Camellia sinensis). This could make licoagrochalcone C a potential biomarker for the consumption of these foods. Based on a literature review very few articles have been published on Licoagrochalcone C.
Structure
Data?1563862717
Synonyms
ValueSource
3',4,4'-Trihydroxy-2-methoxy-3-prenylchalconeHMDB
Chemical FormulaC21H22O5
Average Molecular Weight354.3964
Monoisotopic Molecular Weight354.146723814
IUPAC Name(2E)-1-(3,4-dihydroxyphenyl)-3-[4-hydroxy-2-methoxy-3-(3-methylbut-2-en-1-yl)phenyl]prop-2-en-1-one
Traditional Namelicoagrochalcone C
CAS Registry NumberNot Available
SMILES
COC1=C(\C=C\C(=O)C2=CC(O)=C(O)C=C2)C=CC(O)=C1CC=C(C)C
InChI Identifier
InChI=1S/C21H22O5/c1-13(2)4-8-16-18(23)10-6-14(21(16)26-3)5-9-17(22)15-7-11-19(24)20(25)12-15/h4-7,9-12,23-25H,8H2,1-3H3/b9-5+
InChI KeyRDYZHQQZLIBKBP-WEVVVXLNSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as retrochalcones. These are a form of normal chalcones that are structurally distinguished by the lack of oxygen functionalities at the C2'- and C6'-positions.
KingdomOrganic compounds
Super ClassPhenylpropanoids and polyketides
ClassLinear 1,3-diarylpropanoids
Sub ClassChalcones and dihydrochalcones
Direct ParentRetrochalcones
Alternative Parents
Substituents
  • Retrochalcone
  • Cinnamylphenol
  • Hydroxycinnamic acid or derivatives
  • Methoxyphenol
  • Phenoxy compound
  • Anisole
  • Benzoyl
  • Catechol
  • Methoxybenzene
  • Phenol ether
  • Aryl ketone
  • Styrene
  • Alkyl aryl ether
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Phenol
  • Monocyclic benzene moiety
  • Benzenoid
  • Enone
  • Acryloyl-group
  • Alpha,beta-unsaturated ketone
  • Ketone
  • Ether
  • Hydrocarbon derivative
  • Organic oxide
  • Organic oxygen compound
  • Organooxygen compound
  • Aromatic homomonocyclic compound
Molecular FrameworkAromatic homomonocyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
Role
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.004 g/LALOGPS
logP3.98ALOGPS
logP4.55ChemAxon
logS-5ALOGPS
pKa (Strongest Acidic)7.93ChemAxon
pKa (Strongest Basic)-4.9ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area86.99 ŲChemAxon
Rotatable Bond Count6ChemAxon
Refractivity103.53 m³·mol⁻¹ChemAxon
Polarizability39.03 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+186.51830932474
DeepCCS[M-H]-184.1630932474
DeepCCS[M-2H]-218.35930932474
DeepCCS[M+Na]+193.45930932474
AllCCS[M+H]+187.632859911
AllCCS[M+H-H2O]+184.432859911
AllCCS[M+NH4]+190.632859911
AllCCS[M+Na]+191.532859911
AllCCS[M-H]-185.032859911
AllCCS[M+Na-2H]-184.932859911
AllCCS[M+HCOO]-184.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Licoagrochalcone CCOC1=C(\C=C\C(=O)C2=CC(O)=C(O)C=C2)C=CC(O)=C1CC=C(C)C4985.0Standard polar33892256
Licoagrochalcone CCOC1=C(\C=C\C(=O)C2=CC(O)=C(O)C=C2)C=CC(O)=C1CC=C(C)C3190.1Standard non polar33892256
Licoagrochalcone CCOC1=C(\C=C\C(=O)C2=CC(O)=C(O)C=C2)C=CC(O)=C1CC=C(C)C3400.9Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Licoagrochalcone C,1TMS,isomer #1COC1=C(/C=C/C(=O)C2=CC=C(O)C(O[Si](C)(C)C)=C2)C=CC(O)=C1CC=C(C)C3273.7Semi standard non polar33892256
Licoagrochalcone C,1TMS,isomer #2COC1=C(/C=C/C(=O)C2=CC=C(O[Si](C)(C)C)C(O)=C2)C=CC(O)=C1CC=C(C)C3318.5Semi standard non polar33892256
Licoagrochalcone C,1TMS,isomer #3COC1=C(/C=C/C(=O)C2=CC=C(O)C(O)=C2)C=CC(O[Si](C)(C)C)=C1CC=C(C)C3287.9Semi standard non polar33892256
Licoagrochalcone C,2TMS,isomer #1COC1=C(/C=C/C(=O)C2=CC=C(O[Si](C)(C)C)C(O[Si](C)(C)C)=C2)C=CC(O)=C1CC=C(C)C3206.3Semi standard non polar33892256
Licoagrochalcone C,2TMS,isomer #2COC1=C(/C=C/C(=O)C2=CC=C(O)C(O[Si](C)(C)C)=C2)C=CC(O[Si](C)(C)C)=C1CC=C(C)C3188.6Semi standard non polar33892256
Licoagrochalcone C,2TMS,isomer #3COC1=C(/C=C/C(=O)C2=CC=C(O[Si](C)(C)C)C(O)=C2)C=CC(O[Si](C)(C)C)=C1CC=C(C)C3224.0Semi standard non polar33892256
Licoagrochalcone C,3TMS,isomer #1COC1=C(/C=C/C(=O)C2=CC=C(O[Si](C)(C)C)C(O[Si](C)(C)C)=C2)C=CC(O[Si](C)(C)C)=C1CC=C(C)C3190.8Semi standard non polar33892256
Licoagrochalcone C,1TBDMS,isomer #1COC1=C(/C=C/C(=O)C2=CC=C(O)C(O[Si](C)(C)C(C)(C)C)=C2)C=CC(O)=C1CC=C(C)C3563.3Semi standard non polar33892256
Licoagrochalcone C,1TBDMS,isomer #2COC1=C(/C=C/C(=O)C2=CC=C(O[Si](C)(C)C(C)(C)C)C(O)=C2)C=CC(O)=C1CC=C(C)C3604.7Semi standard non polar33892256
Licoagrochalcone C,1TBDMS,isomer #3COC1=C(/C=C/C(=O)C2=CC=C(O)C(O)=C2)C=CC(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C3580.9Semi standard non polar33892256
Licoagrochalcone C,2TBDMS,isomer #1COC1=C(/C=C/C(=O)C2=CC=C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C2)C=CC(O)=C1CC=C(C)C3727.1Semi standard non polar33892256
Licoagrochalcone C,2TBDMS,isomer #2COC1=C(/C=C/C(=O)C2=CC=C(O)C(O[Si](C)(C)C(C)(C)C)=C2)C=CC(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C3717.3Semi standard non polar33892256
Licoagrochalcone C,2TBDMS,isomer #3COC1=C(/C=C/C(=O)C2=CC=C(O[Si](C)(C)C(C)(C)C)C(O)=C2)C=CC(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C3762.3Semi standard non polar33892256
Licoagrochalcone C,3TBDMS,isomer #1COC1=C(/C=C/C(=O)C2=CC=C(O[Si](C)(C)C(C)(C)C)C(O[Si](C)(C)C(C)(C)C)=C2)C=CC(O[Si](C)(C)C(C)(C)C)=C1CC=C(C)C3854.5Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Licoagrochalcone C GC-MS (Non-derivatized) - 70eV, Positivesplash10-000i-2449000000-57f889cceea7cbfcdf792017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Licoagrochalcone C GC-MS (3 TMS) - 70eV, Positivesplash10-0a4i-1010290000-0cf061a260c2c9cb20f12017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Licoagrochalcone C GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 10V, Positive-QTOFsplash10-0a4i-0239000000-d2b608519c4042e5b9ff2016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 20V, Positive-QTOFsplash10-0ktr-2975000000-51861c5225c05373a0962016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 40V, Positive-QTOFsplash10-1009-5911000000-b2228a505c67ce09f2d02016-08-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 10V, Negative-QTOFsplash10-0udi-0119000000-895dc18f65ea5cac894c2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 20V, Negative-QTOFsplash10-0udr-0339000000-20c18365ed413a19760e2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 40V, Negative-QTOFsplash10-052r-1943000000-571d56a44f7c44967c1a2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 10V, Positive-QTOFsplash10-0a4i-0159000000-6bfe42fee24c58d441132021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 20V, Positive-QTOFsplash10-052k-0593000000-b6ebe7bd7d60dbab4b242021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 40V, Positive-QTOFsplash10-053l-9640000000-51fd8db4a781628990822021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 10V, Negative-QTOFsplash10-0udi-0009000000-643054a146279b7abc6c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 20V, Negative-QTOFsplash10-0g4r-0279000000-a7f22f9eb0effe40bb3d2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Licoagrochalcone C 40V, Negative-QTOFsplash10-0gb9-2195000000-b1f53008848f5c5727902021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB014108
KNApSAcK IDC00014487
Chemspider ID4477417
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound5318990
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .