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Record Information

Version

5.0

Status

Expected but not Quantified

Creation Date

2012-09-12 02:05:37 UTC

Update Date

2022-03-07 02:56:37 UTC

HMDB ID

HMDB0040535

Secondary Accession Numbers

HMDB40535

Metabolite Identification

Common Name

Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside]

Description

Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] is found in onion-family vegetables. Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] is a constituent of Allium vineale (wild garlic).

Structure

MOL 3D MOL SDF 3D SDF PDB 3D PDB SMILES InChI


  Mrv0541 02241207562D          

 62 70  0  0  0  0            999 V2000
    5.4164    2.2954    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6707    1.5118    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1854    0.8436    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.6707    0.1767    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    5.1854   -0.4915    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4017   -0.2358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2582    0.1767    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2582   -0.6482    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5432   -0.2358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8296   -0.6482    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    0.8296   -1.4732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.5432   -1.8856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.2582   -1.4732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9719   -1.8856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6868   -1.4732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6868   -0.6482    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9719   -0.2358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    2.9719    0.5892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.6868    1.0016    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4017    0.5892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.4869    1.4100    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.4558    0.4311    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.4558    1.2560    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.2093    0.9205    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.8761    1.4058    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.7895    2.2267    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.4577    2.7106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.0360    2.5622    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.3691    2.0769    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
    0.1147   -1.8856    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6002   -1.4732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.6002   -0.6482    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3137   -0.2358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3137    0.5892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0287    1.0016    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3137   -2.7106    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.3137   -1.8856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0287   -1.4732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7436   -1.8856    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -2.0287   -0.6482    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.7436   -0.2358    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4572   -0.6482    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4572   -1.4732    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1721   -1.8856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1721   -2.7106    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1721    0.5892    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.1721   -0.2358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8857   -0.6482    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6006   -0.2358    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8857   -1.4732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.6006   -1.8856    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3156   -1.4732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.3156   -0.6482    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0293   -0.2358    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0293    0.5892    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7442    1.0016    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0293   -2.7106    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0293   -1.8856    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7442   -1.4732    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7442   -0.6482    0.0000 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4577   -0.2358    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.4577   -1.8856    0.0000 O   0  0  0  0  0  0  0  0  0  0  0  0
  1  2  1  0  0  0  0
  2  3  1  0  0  0  0
  2 23  1  0  0  0  0
  3  4  1  0  0  0  0
  3 20  1  0  0  0  0
  4  5  1  0  0  0  0
  4 22  1  0  0  0  0
  5  6  1  0  0  0  0
  6 16  1  0  0  0  0
  6 20  1  0  0  0  0
  7  8  1  0  0  0  0
  8  9  1  0  0  0  0
  8 13  1  0  0  0  0
  8 17  1  0  0  0  0
  9 10  1  0  0  0  0
 10 11  1  0  0  0  0
 11 12  1  0  0  0  0
 11 30  1  0  0  0  0
 12 13  1  0  0  0  0
 13 14  2  0  0  0  0
 14 15  1  0  0  0  0
 15 16  1  0  0  0  0
 16 17  1  0  0  0  0
 17 18  1  0  0  0  0
 18 19  1  0  0  0  0
 19 20  1  0  0  0  0
 20 21  1  0  0  0  0
 22 23  1  0  0  0  0
 23 24  1  0  0  0  0
 23 29  1  0  0  0  0
 24 25  1  0  0  0  0
 25 26  1  0  0  0  0
 26 27  1  0  0  0  0
 26 28  1  0  0  0  0
 28 29  1  0  0  0  0
 30 31  1  0  0  0  0
 31 32  1  0  0  0  0
 31 37  1  0  0  0  0
 32 33  1  0  0  0  0
 33 34  1  0  0  0  0
 33 40  1  0  0  0  0
 34 35  1  0  0  0  0
 36 37  1  0  0  0  0
 37 38  1  0  0  0  0
 38 39  1  0  0  0  0
 38 40  1  0  0  0  0
 40 41  1  0  0  0  0
 41 42  1  0  0  0  0
 42 43  1  0  0  0  0
 42 47  1  0  0  0  0
 43 44  1  0  0  0  0
 44 45  1  0  0  0  0
 44 50  1  0  0  0  0
 46 47  1  0  0  0  0
 47 48  1  0  0  0  0
 48 49  1  0  0  0  0
 48 50  1  0  0  0  0
 50 51  1  0  0  0  0
 51 52  1  0  0  0  0
 52 53  1  0  0  0  0
 52 58  1  0  0  0  0
 53 54  1  0  0  0  0
 54 55  1  0  0  0  0
 54 60  1  0  0  0  0
 55 56  1  0  0  0  0
 57 58  1  0  0  0  0
 58 59  1  0  0  0  0
 59 60  1  0  0  0  0
 59 62  1  0  0  0  0
 60 61  1  0  0  0  0
M  END

HMDB0040535
     RDKit          3D
Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside]
134142  0  0  0  0  0  0  0  0999 V2000
  -13.7665    2.7796   -1.1680 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5734    1.8514   -1.2299 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6441    2.2062   -0.1054 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3294    0.9051    0.6380 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9883   -0.1181   -0.3951 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.0559   -0.4962   -1.1735 O   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0945    0.4345   -1.1128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9697    0.4550   -1.1905 O   0  0  0  0  0  0  0  0  0  0  0  0
   -8.8489    0.4924   -0.3412 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.6286    0.3342   -1.1796 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.0588   -1.0075   -0.8191 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.5493   -0.9513   -0.7997 C   0  0  0  0  0  0  0  0  0  0  0  0
   -4.8754   -2.2040   -1.2222 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.4726   -2.2564   -0.8214 C   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8763   -1.3662   -0.0986 C   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4428   -1.5078    0.2594 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8011   -0.3260    0.8604 C   0  0  0  0  0  0  0  0  0  0  0  0
   -0.0186    0.2885   -0.1291 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.3241    0.2188    0.0807 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.9455    1.4684    0.1359 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.1564    1.2671    0.7903 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.8134    2.6266    0.8863 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.0386    3.1595   -0.3893 O   0  0  0  0  0  0  0  0  0  0  0  0
    4.0728    0.3318    0.0740 C   0  0  0  0  0  0  0  0  0  0  0  0
    4.9985    0.9469   -0.7567 O   0  0  0  0  0  0  0  0  0  0  0  0
    6.3023    0.6821   -0.3535 C   0  0  0  0  0  0  0  0  0  0  0  0
    6.9991    1.8294   -0.0261 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.2024    1.4772    0.5925 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.0101    0.4824    1.7134 C   0  0  0  0  0  0  0  0  0  0  0  0
    9.1664    0.9718   -0.4636 C   0  0  0  0  0  0  0  0  0  0  0  0
   10.0071    0.0274    0.0794 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.3215    0.4472    0.1230 C   0  0  0  0  0  0  0  0  0  0  0  0
   12.1038   -0.4773   -0.5849 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.3544    0.0634   -0.8921 C   0  0  0  0  0  0  0  0  0  0  0  0
   14.2467   -1.0444   -1.4066 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.5051   -0.4786   -1.7129 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.9584    0.7885    0.2661 C   0  0  0  0  0  0  0  0  0  0  0  0
   15.3103    0.4059    0.3753 O   0  0  0  0  0  0  0  0  0  0  0  0
   13.3285    0.4790    1.5938 C   0  0  0  0  0  0  0  0  0  0  0  0
   13.7821   -0.7391    2.0696 O   0  0  0  0  0  0  0  0  0  0  0  0
   11.8149    0.4225    1.5447 C   0  0  0  0  0  0  0  0  0  0  0  0
   11.3343   -0.7213    2.1822 O   0  0  0  0  0  0  0  0  0  0  0  0
    8.4342    0.5058   -1.6901 C   0  0  0  0  0  0  0  0  0  0  0  0
    8.3815    1.5703   -2.5935 O   0  0  0  0  0  0  0  0  0  0  0  0
    7.0772   -0.0600   -1.4139 C   0  0  0  0  0  0  0  0  0  0  0  0
    7.1166   -1.4305   -1.1319 O   0  0  0  0  0  0  0  0  0  0  0  0
    3.3883   -0.7619   -0.7040 C   0  0  0  0  0  0  0  0  0  0  0  0
    3.4110   -1.9834   -0.0028 O   0  0  0  0  0  0  0  0  0  0  0  0
    1.9748   -0.4924   -1.0825 C   0  0  0  0  0  0  0  0  0  0  0  0
    1.8679    0.3520   -2.1890 O   0  0  0  0  0  0  0  0  0  0  0  0
   -1.5875    0.6151    1.6625 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.0289    0.1980    1.7696 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.5984   -0.1760    0.4111 C   0  0  0  0  0  0  0  0  0  0  0  0
   -3.3686    0.9430   -0.5938 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.0651   -0.3730    0.5015 C   0  0  0  0  0  0  0  0  0  0  0  0
   -5.4846   -1.3352    1.5877 C   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9624   -1.4879    1.6699 C   0  0  0  0  0  0  0  0  0  0  0  0
   -7.7128   -1.5398    0.3883 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.0933   -2.9898    0.1270 C   0  0  0  0  0  0  0  0  0  0  0  0
   -8.9461   -0.6824    0.5703 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.2286   -1.3195    0.1634 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9950   -1.8915    1.3497 C   0  0  0  0  0  0  0  0  0  0  0  0
  -14.4169    2.5280   -2.0336 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.4520    3.8472   -1.1749 H   0  0  0  0  0  0  0  0  0  0  0  0
  -14.3743    2.5674   -0.2556 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.0970    1.9936   -2.2123 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.1085    2.9137    0.6231 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.7151    2.6350   -0.4835 H   0  0  0  0  0  0  0  0  0  0  0  0
  -12.2589    0.6755    1.2145 H   0  0  0  0  0  0  0  0  0  0  0  0
  -10.4831    1.0580    1.3348 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.7521    0.2534   -1.9824 H   0  0  0  0  0  0  0  0  0  0  0  0
  -13.6728    0.2877   -0.2010 H   0  0  0  0  0  0  0  0  0  0  0  0
   -8.7750    1.4419    0.2292 H   0  0  0  0  0  0  0  0  0  0  0  0
   -6.9132    1.1653   -0.9997 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.8539    0.3800   -2.2659 H   0  0  0  0  0  0  0  0  0  0  0  0
   -7.3042   -1.6898   -1.6922 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.2879   -0.1693   -1.5769 H   0  0  0  0  0  0  0  0  0  0  0  0
   -4.9421   -2.2550   -2.3399 H   0  0  0  0  0  0  0  0  0  0  0  0
   -5.3548   -3.1225   -0.7736 H   0  0  0  0  0  0  0  0  0  0  0  0
   -2.8971   -3.1358   -1.1758 H   0  0  0  0  0  0  0  0  0  0  0  0
   -1.4259   -2.3496    1.0255 H   0  0  0  0  0  0  0  0  0  0  0  0
   -0.8574   -1.9449   -0.5927 H   0  0  0  0  0  0  0  0  0  0  0  0
    0.0043   -0.7441    1.5678 H   0  0  0  0  0  0  0  0  0  0  0  0
    1.6175   -0.3241    1.0019 H   0  0  0  0  0  0  0  0  0  0  0  0
    2.9293    0.9661    1.8402 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.7801    2.5345    1.3895 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.1564    3.3371    1.4612 H   0  0  0  0  0  0  0  0  0  0  0  0
    3.4191    2.7456   -1.0524 H   0  0  0  0  0  0  0  0  0  0  0  0
    4.6552   -0.2020    0.8700 H   0  0  0  0  0  0  0  0  0  0  0  0
    6.2368    0.0202    0.5594 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.5883    2.4195    1.0812 H   0  0  0  0  0  0  0  0  0  0  0  0
    7.0797    0.7034    2.2722 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.0196   -0.5610    1.3218 H   0  0  0  0  0  0  0  0  0  0  0  0
    8.8239    0.5751    2.4758 H   0  0  0  0  0  0  0  0  0  0  0  0
    9.8097    1.8539   -0.7411 H   0  0  0  0  0  0  0  0  0  0  0  0
   11.4616    1.4741   -0.2711 H   0  0  0  0  0  0  0  0  0  0  0  0
   13.2089    0.7868   -1.7450 H   0  0  0  0  0  0  0  0  0  0  0  0
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M  END


  Mrv0541 02241207562D          

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M  END
> <DATABASE_ID>
HMDB0040535

> <DATABASE_NAME>
hmdb

> <SMILES>
CC1C2C(CC3C4CC=C5CC(CCC5(C)C4CCC23C)OC2OC(CO)C(OC3OC(C)C(OC4OC(CO)C(O)C(O)C4O)C(O)C3O)C(O)C2O)OC11CCC(C)CO1

> <INCHI_IDENTIFIER>
InChI=1S/C45H72O17/c1-19-8-13-45(55-18-19)20(2)30-27(62-45)15-26-24-7-6-22-14-23(9-11-43(22,4)25(24)10-12-44(26,30)5)57-41-37(54)34(51)39(29(17-47)59-41)61-40-36(53)33(50)38(21(3)56-40)60-42-35(52)32(49)31(48)28(16-46)58-42/h6,19-21,23-42,46-54H,7-18H2,1-5H3

> <INCHI_KEY>
YIINVROKKFPIQD-UHFFFAOYSA-N

> <FORMULA>
C45H72O17

> <MOLECULAR_WEIGHT>
885.043

> <EXACT_MASS>
884.476950878

> <JCHEM_ACCEPTOR_COUNT>
17

> <JCHEM_AVERAGE_POLARIZABILITY>
96.79775829012029

> <JCHEM_BIOAVAILABILITY>
0

> <JCHEM_DONOR_COUNT>
9

> <JCHEM_FORMAL_CHARGE>
0

> <JCHEM_GHOSE_FILTER>
0

> <JCHEM_IUPAC>
2-[(6-{[4,5-dihydroxy-2-(hydroxymethyl)-6-{5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosan]-18'-eneoxy}oxan-3-yl]oxy}-4,5-dihydroxy-2-methyloxan-3-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol

> <ALOGPS_LOGP>
0.80

> <JCHEM_LOGP>
0.661708483666668

> <ALOGPS_LOGS>
-3.50

> <JCHEM_MDDR_LIKE_RULE>
1

> <JCHEM_NUMBER_OF_RINGS>
9

> <JCHEM_PHYSIOLOGICAL_CHARGE>
0

> <JCHEM_PKA>
12.230537234693003

> <JCHEM_PKA_STRONGEST_ACIDIC>
11.775956007727517

> <JCHEM_PKA_STRONGEST_BASIC>
-2.9813780588928225

> <JCHEM_POLAR_SURFACE_AREA>
255.90999999999994

> <JCHEM_REFRACTIVITY>
215.96210000000008

> <JCHEM_ROTATABLE_BOND_COUNT>
8

> <JCHEM_RULE_OF_FIVE>
0

> <ALOGPS_SOLUBILITY>
2.80e-01 g/l

> <JCHEM_TRADITIONAL_IUPAC>
2-[(6-{[4,5-dihydroxy-2-(hydroxymethyl)-6-{5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosan]-18'-eneoxy}oxan-3-yl]oxy}-4,5-dihydroxy-2-methyloxan-3-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol

> <JCHEM_VEBER_RULE>
0

$$$$

HMDB0040535
     RDKit          3D
Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside]
134142  0  0  0  0  0  0  0  0999 V2000
  -13.7665    2.7796   -1.1680 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.5734    1.8514   -1.2299 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.6441    2.2062   -0.1054 C   0  0  0  0  0  0  0  0  0  0  0  0
  -11.3294    0.9051    0.6380 C   0  0  0  0  0  0  0  0  0  0  0  0
  -10.9883   -0.1181   -0.3951 C   0  0  0  0  0  0  0  0  0  0  0  0
  -12.0559   -0.4962   -1.1735 O   0  0  0  0  0  0  0  0  0  0  0  0
  -13.0945    0.4345   -1.1128 C   0  0  0  0  0  0  0  0  0  0  0  0
   -9.9697    0.4550   -1.1905 O   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

HEADER    PROTEIN                                 24-FEB-12   NONE
TITLE     NULL                                                        
COMPND    NULL                                                        
SOURCE    NULL                                                        
KEYWDS    NULL                                                        
EXPDTA    NULL                                                        
AUTHOR    Marvin                                                      
REVDAT   1   24-FEB-12         0                                  
HETATM    1  C   UNK     0      10.111   4.285   0.000  0.00  0.00           C+0
HETATM    2  C   UNK     0      10.585   2.822   0.000  0.00  0.00           C+0
HETATM    3  C   UNK     0       9.679   1.575   0.000  0.00  0.00           C+0
HETATM    4  C   UNK     0      10.585   0.330   0.000  0.00  0.00           C+0
HETATM    5  C   UNK     0       9.679  -0.917   0.000  0.00  0.00           C+0
HETATM    6  C   UNK     0       8.217  -0.440   0.000  0.00  0.00           C+0
HETATM    7  C   UNK     0       4.215   0.330   0.000  0.00  0.00           C+0
HETATM    8  C   UNK     0       4.215  -1.210   0.000  0.00  0.00           C+0
HETATM    9  C   UNK     0       2.881  -0.440   0.000  0.00  0.00           C+0
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HETATM   11  C   UNK     0       1.549  -2.750   0.000  0.00  0.00           C+0
HETATM   12  C   UNK     0       2.881  -3.520   0.000  0.00  0.00           C+0
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HETATM   24  C   UNK     0      13.457   1.718   0.000  0.00  0.00           C+0
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HETATM   26  C   UNK     0      14.540   4.157   0.000  0.00  0.00           C+0
HETATM   27  C   UNK     0      15.788   5.060   0.000  0.00  0.00           C+0
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HETATM   29  O   UNK     0      11.889   3.877   0.000  0.00  0.00           O+0
HETATM   30  O   UNK     0       0.214  -3.520   0.000  0.00  0.00           O+0
HETATM   31  C   UNK     0      -1.120  -2.750   0.000  0.00  0.00           C+0
HETATM   32  O   UNK     0      -1.120  -1.210   0.000  0.00  0.00           O+0
HETATM   33  C   UNK     0      -2.452  -0.440   0.000  0.00  0.00           C+0
HETATM   34  C   UNK     0      -2.452   1.100   0.000  0.00  0.00           C+0
HETATM   35  O   UNK     0      -3.787   1.870   0.000  0.00  0.00           O+0
HETATM   36  O   UNK     0      -2.452  -5.060   0.000  0.00  0.00           O+0
HETATM   37  C   UNK     0      -2.452  -3.520   0.000  0.00  0.00           C+0
HETATM   38  C   UNK     0      -3.787  -2.750   0.000  0.00  0.00           C+0
HETATM   39  O   UNK     0      -5.121  -3.520   0.000  0.00  0.00           O+0
HETATM   40  C   UNK     0      -3.787  -1.210   0.000  0.00  0.00           C+0
HETATM   41  O   UNK     0      -5.121  -0.440   0.000  0.00  0.00           O+0
HETATM   42  C   UNK     0      -6.453  -1.210   0.000  0.00  0.00           C+0
HETATM   43  O   UNK     0      -6.453  -2.750   0.000  0.00  0.00           O+0
HETATM   44  C   UNK     0      -7.788  -3.520   0.000  0.00  0.00           C+0
HETATM   45  C   UNK     0      -7.788  -5.060   0.000  0.00  0.00           C+0
HETATM   46  O   UNK     0      -7.788   1.100   0.000  0.00  0.00           O+0
HETATM   47  C   UNK     0      -7.788  -0.440   0.000  0.00  0.00           C+0
HETATM   48  C   UNK     0      -9.120  -1.210   0.000  0.00  0.00           C+0
HETATM   49  O   UNK     0     -10.454  -0.440   0.000  0.00  0.00           O+0
HETATM   50  C   UNK     0      -9.120  -2.750   0.000  0.00  0.00           C+0
HETATM   51  O   UNK     0     -10.454  -3.520   0.000  0.00  0.00           O+0
HETATM   52  C   UNK     0     -11.789  -2.750   0.000  0.00  0.00           C+0
HETATM   53  O   UNK     0     -11.789  -1.210   0.000  0.00  0.00           O+0
HETATM   54  C   UNK     0     -13.121  -0.440   0.000  0.00  0.00           C+0
HETATM   55  C   UNK     0     -13.121   1.100   0.000  0.00  0.00           C+0
HETATM   56  O   UNK     0     -14.456   1.870   0.000  0.00  0.00           O+0
HETATM   57  O   UNK     0     -13.121  -5.060   0.000  0.00  0.00           O+0
HETATM   58  C   UNK     0     -13.121  -3.520   0.000  0.00  0.00           C+0
HETATM   59  C   UNK     0     -14.456  -2.750   0.000  0.00  0.00           C+0
HETATM   60  C   UNK     0     -14.456  -1.210   0.000  0.00  0.00           C+0
HETATM   61  O   UNK     0     -15.788  -0.440   0.000  0.00  0.00           O+0
HETATM   62  O   UNK     0     -15.788  -3.520   0.000  0.00  0.00           O+0
CONECT    1    2                                                            
CONECT    2    1    3   23                                                  
CONECT    3    2    4   20                                                  
CONECT    4    3    5   22                                                  
CONECT    5    4    6                                                       
CONECT    6    5   16   20                                                  
CONECT    7    8                                                            
CONECT    8    7    9   13   17                                             
CONECT    9    8   10                                                       
CONECT   10    9   11                                                       
CONECT   11   10   12   30                                                  
CONECT   12   11   13                                                       
CONECT   13    8   12   14                                                  
CONECT   14   13   15                                                       
CONECT   15   14   16                                                       
CONECT   16    6   15   17                                                  
CONECT   17    8   16   18                                                  
CONECT   18   17   19                                                       
CONECT   19   18   20                                                       
CONECT   20    3    6   19   21                                             
CONECT   21   20                                                            
CONECT   22    4   23                                                       
CONECT   23    2   22   24   29                                             
CONECT   24   23   25                                                       
CONECT   25   24   26                                                       
CONECT   26   25   27   28                                                  
CONECT   27   26                                                            
CONECT   28   26   29                                                       
CONECT   29   23   28                                                       
CONECT   30   11   31                                                       
CONECT   31   30   32   37                                                  
CONECT   32   31   33                                                       
CONECT   33   32   34   40                                                  
CONECT   34   33   35                                                       
CONECT   35   34                                                            
CONECT   36   37                                                            
CONECT   37   31   36   38                                                  
CONECT   38   37   39   40                                                  
CONECT   39   38                                                            
CONECT   40   33   38   41                                                  
CONECT   41   40   42                                                       
CONECT   42   41   43   47                                                  
CONECT   43   42   44                                                       
CONECT   44   43   45   50                                                  
CONECT   45   44                                                            
CONECT   46   47                                                            
CONECT   47   42   46   48                                                  
CONECT   48   47   49   50                                                  
CONECT   49   48                                                            
CONECT   50   44   48   51                                                  
CONECT   51   50   52                                                       
CONECT   52   51   53   58                                                  
CONECT   53   52   54                                                       
CONECT   54   53   55   60                                                  
CONECT   55   54   56                                                       
CONECT   56   55                                                            
CONECT   57   58                                                            
CONECT   58   52   57   59                                                  
CONECT   59   58   60   62                                                  
CONECT   60   54   59   61                                                  
CONECT   61   60                                                            
CONECT   62   59                                                            
MASTER        0    0    0    0    0    0    0    0   62    0  140    0
END

COMPND    HMDB0040535
HETATM    1  C1  UNL     1     -13.766   2.780  -1.168  1.00  0.00           C  
HETATM    2  C2  UNL     1     -12.573   1.851  -1.230  1.00  0.00           C  
HETATM    3  C3  UNL     1     -11.644   2.206  -0.105  1.00  0.00           C  
HETATM    4  C4  UNL     1     -11.329   0.905   0.638  1.00  0.00           C  
HETATM    5  C5  UNL     1     -10.988  -0.118  -0.395  1.00  0.00           C  
HETATM    6  O1  UNL     1     -12.056  -0.496  -1.174  1.00  0.00           O  
HETATM    7  C6  UNL     1     -13.095   0.434  -1.113  1.00  0.00           C  
HETATM    8  O2  UNL     1      -9.970   0.455  -1.191  1.00  0.00           O  
HETATM    9  C7  UNL     1      -8.849   0.492  -0.341  1.00  0.00           C  
HETATM   10  C8  UNL     1      -7.629   0.334  -1.180  1.00  0.00           C  
HETATM   11  C9  UNL     1      -7.059  -1.008  -0.819  1.00  0.00           C  
HETATM   12  C10 UNL     1      -5.549  -0.951  -0.800  1.00  0.00           C  
HETATM   13  C11 UNL     1      -4.875  -2.204  -1.222  1.00  0.00           C  
HETATM   14  C12 UNL     1      -3.473  -2.256  -0.821  1.00  0.00           C  
HETATM   15  C13 UNL     1      -2.876  -1.366  -0.099  1.00  0.00           C  
HETATM   16  C14 UNL     1      -1.443  -1.508   0.259  1.00  0.00           C  
HETATM   17  C15 UNL     1      -0.801  -0.326   0.860  1.00  0.00           C  
HETATM   18  O3  UNL     1      -0.019   0.289  -0.129  1.00  0.00           O  
HETATM   19  C16 UNL     1       1.324   0.219   0.081  1.00  0.00           C  
HETATM   20  O4  UNL     1       1.946   1.468   0.136  1.00  0.00           O  
HETATM   21  C17 UNL     1       3.156   1.267   0.790  1.00  0.00           C  
HETATM   22  C18 UNL     1       3.813   2.627   0.886  1.00  0.00           C  
HETATM   23  O5  UNL     1       4.039   3.159  -0.389  1.00  0.00           O  
HETATM   24  C19 UNL     1       4.073   0.332   0.074  1.00  0.00           C  
HETATM   25  O6  UNL     1       4.999   0.947  -0.757  1.00  0.00           O  
HETATM   26  C20 UNL     1       6.302   0.682  -0.353  1.00  0.00           C  
HETATM   27  O7  UNL     1       6.999   1.829  -0.026  1.00  0.00           O  
HETATM   28  C21 UNL     1       8.202   1.477   0.592  1.00  0.00           C  
HETATM   29  C22 UNL     1       8.010   0.482   1.713  1.00  0.00           C  
HETATM   30  C23 UNL     1       9.166   0.972  -0.464  1.00  0.00           C  
HETATM   31  O8  UNL     1      10.007   0.027   0.079  1.00  0.00           O  
HETATM   32  C24 UNL     1      11.321   0.447   0.123  1.00  0.00           C  
HETATM   33  O9  UNL     1      12.104  -0.477  -0.585  1.00  0.00           O  
HETATM   34  C25 UNL     1      13.354   0.063  -0.892  1.00  0.00           C  
HETATM   35  C26 UNL     1      14.247  -1.044  -1.407  1.00  0.00           C  
HETATM   36  O10 UNL     1      15.505  -0.479  -1.713  1.00  0.00           O  
HETATM   37  C27 UNL     1      13.958   0.788   0.266  1.00  0.00           C  
HETATM   38  O11 UNL     1      15.310   0.406   0.375  1.00  0.00           O  
HETATM   39  C28 UNL     1      13.328   0.479   1.594  1.00  0.00           C  
HETATM   40  O12 UNL     1      13.782  -0.739   2.070  1.00  0.00           O  
HETATM   41  C29 UNL     1      11.815   0.423   1.545  1.00  0.00           C  
HETATM   42  O13 UNL     1      11.334  -0.721   2.182  1.00  0.00           O  
HETATM   43  C30 UNL     1       8.434   0.506  -1.690  1.00  0.00           C  
HETATM   44  O14 UNL     1       8.381   1.570  -2.594  1.00  0.00           O  
HETATM   45  C31 UNL     1       7.077  -0.060  -1.414  1.00  0.00           C  
HETATM   46  O15 UNL     1       7.117  -1.430  -1.132  1.00  0.00           O  
HETATM   47  C32 UNL     1       3.388  -0.762  -0.704  1.00  0.00           C  
HETATM   48  O16 UNL     1       3.411  -1.983  -0.003  1.00  0.00           O  
HETATM   49  C33 UNL     1       1.975  -0.492  -1.083  1.00  0.00           C  
HETATM   50  O17 UNL     1       1.868   0.352  -2.189  1.00  0.00           O  
HETATM   51  C34 UNL     1      -1.587   0.615   1.663  1.00  0.00           C  
HETATM   52  C35 UNL     1      -3.029   0.198   1.770  1.00  0.00           C  
HETATM   53  C36 UNL     1      -3.598  -0.176   0.411  1.00  0.00           C  
HETATM   54  C37 UNL     1      -3.369   0.943  -0.594  1.00  0.00           C  
HETATM   55  C38 UNL     1      -5.065  -0.373   0.501  1.00  0.00           C  
HETATM   56  C39 UNL     1      -5.485  -1.335   1.588  1.00  0.00           C  
HETATM   57  C40 UNL     1      -6.962  -1.488   1.670  1.00  0.00           C  
HETATM   58  C41 UNL     1      -7.713  -1.540   0.388  1.00  0.00           C  
HETATM   59  C42 UNL     1      -8.093  -2.990   0.127  1.00  0.00           C  
HETATM   60  C43 UNL     1      -8.946  -0.682   0.570  1.00  0.00           C  
HETATM   61  C44 UNL     1     -10.229  -1.319   0.163  1.00  0.00           C  
HETATM   62  C45 UNL     1     -10.995  -1.891   1.350  1.00  0.00           C  
HETATM   63  H1  UNL     1     -14.417   2.528  -2.034  1.00  0.00           H  
HETATM   64  H2  UNL     1     -13.452   3.847  -1.175  1.00  0.00           H  
HETATM   65  H3  UNL     1     -14.374   2.567  -0.256  1.00  0.00           H  
HETATM   66  H4  UNL     1     -12.097   1.994  -2.212  1.00  0.00           H  
HETATM   67  H5  UNL     1     -12.109   2.914   0.623  1.00  0.00           H  
HETATM   68  H6  UNL     1     -10.715   2.635  -0.484  1.00  0.00           H  
HETATM   69  H7  UNL     1     -12.259   0.675   1.215  1.00  0.00           H  
HETATM   70  H8  UNL     1     -10.483   1.058   1.335  1.00  0.00           H  
HETATM   71  H9  UNL     1     -13.752   0.253  -1.982  1.00  0.00           H  
HETATM   72  H10 UNL     1     -13.673   0.288  -0.201  1.00  0.00           H  
HETATM   73  H11 UNL     1      -8.775   1.442   0.229  1.00  0.00           H  
HETATM   74  H12 UNL     1      -6.913   1.165  -1.000  1.00  0.00           H  
HETATM   75  H13 UNL     1      -7.854   0.380  -2.266  1.00  0.00           H  
HETATM   76  H14 UNL     1      -7.304  -1.690  -1.692  1.00  0.00           H  
HETATM   77  H15 UNL     1      -5.288  -0.169  -1.577  1.00  0.00           H  
HETATM   78  H16 UNL     1      -4.942  -2.255  -2.340  1.00  0.00           H  
HETATM   79  H17 UNL     1      -5.355  -3.123  -0.774  1.00  0.00           H  
HETATM   80  H18 UNL     1      -2.897  -3.136  -1.176  1.00  0.00           H  
HETATM   81  H19 UNL     1      -1.426  -2.350   1.026  1.00  0.00           H  
HETATM   82  H20 UNL     1      -0.857  -1.945  -0.593  1.00  0.00           H  
HETATM   83  H21 UNL     1       0.004  -0.744   1.568  1.00  0.00           H  
HETATM   84  H22 UNL     1       1.618  -0.324   1.002  1.00  0.00           H  
HETATM   85  H23 UNL     1       2.929   0.966   1.840  1.00  0.00           H  
HETATM   86  H24 UNL     1       4.780   2.534   1.390  1.00  0.00           H  
HETATM   87  H25 UNL     1       3.156   3.337   1.461  1.00  0.00           H  
HETATM   88  H26 UNL     1       3.419   2.746  -1.052  1.00  0.00           H  
HETATM   89  H27 UNL     1       4.655  -0.202   0.870  1.00  0.00           H  
HETATM   90  H28 UNL     1       6.237   0.020   0.559  1.00  0.00           H  
HETATM   91  H29 UNL     1       8.588   2.420   1.081  1.00  0.00           H  
HETATM   92  H30 UNL     1       7.080   0.703   2.272  1.00  0.00           H  
HETATM   93  H31 UNL     1       8.020  -0.561   1.322  1.00  0.00           H  
HETATM   94  H32 UNL     1       8.824   0.575   2.476  1.00  0.00           H  
HETATM   95  H33 UNL     1       9.810   1.854  -0.741  1.00  0.00           H  
HETATM   96  H34 UNL     1      11.462   1.474  -0.271  1.00  0.00           H  
HETATM   97  H35 UNL     1      13.209   0.787  -1.745  1.00  0.00           H  
HETATM   98  H36 UNL     1      14.326  -1.837  -0.653  1.00  0.00           H  
HETATM   99  H37 UNL     1      13.791  -1.408  -2.354  1.00  0.00           H  
HETATM  100  H38 UNL     1      15.323   0.320  -2.272  1.00  0.00           H  
HETATM  101  H39 UNL     1      13.976   1.882   0.077  1.00  0.00           H  
HETATM  102  H40 UNL     1      15.386  -0.533   0.665  1.00  0.00           H  
HETATM  103  H41 UNL     1      13.633   1.300   2.295  1.00  0.00           H  
HETATM  104  H42 UNL     1      13.668  -0.748   3.068  1.00  0.00           H  
HETATM  105  H43 UNL     1      11.370   1.300   2.063  1.00  0.00           H  
HETATM  106  H44 UNL     1      11.724  -1.501   1.674  1.00  0.00           H  
HETATM  107  H45 UNL     1       9.038  -0.296  -2.166  1.00  0.00           H  
HETATM  108  H46 UNL     1       7.808   1.315  -3.338  1.00  0.00           H  
HETATM  109  H47 UNL     1       6.480   0.046  -2.362  1.00  0.00           H  
HETATM  110  H48 UNL     1       8.044  -1.649  -0.869  1.00  0.00           H  
HETATM  111  H49 UNL     1       3.959  -0.962  -1.649  1.00  0.00           H  
HETATM  112  H50 UNL     1       3.734  -1.786   0.900  1.00  0.00           H  
HETATM  113  H51 UNL     1       1.438  -1.426  -1.280  1.00  0.00           H  
HETATM  114  H52 UNL     1       1.677  -0.146  -3.031  1.00  0.00           H  
HETATM  115  H53 UNL     1      -1.488   1.685   1.352  1.00  0.00           H  
HETATM  116  H54 UNL     1      -1.220   0.593   2.739  1.00  0.00           H  
HETATM  117  H55 UNL     1      -3.694   0.949   2.204  1.00  0.00           H  
HETATM  118  H56 UNL     1      -3.015  -0.768   2.354  1.00  0.00           H  
HETATM  119  H57 UNL     1      -2.452   1.507  -0.438  1.00  0.00           H  
HETATM  120  H58 UNL     1      -3.289   0.461  -1.607  1.00  0.00           H  
HETATM  121  H59 UNL     1      -4.255   1.612  -0.617  1.00  0.00           H  
HETATM  122  H60 UNL     1      -5.552   0.587   0.660  1.00  0.00           H  
HETATM  123  H61 UNL     1      -5.140  -0.912   2.553  1.00  0.00           H  
HETATM  124  H62 UNL     1      -4.936  -2.290   1.442  1.00  0.00           H  
HETATM  125  H63 UNL     1      -7.358  -0.678   2.357  1.00  0.00           H  
HETATM  126  H64 UNL     1      -7.163  -2.423   2.243  1.00  0.00           H  
HETATM  127  H65 UNL     1      -7.313  -3.667   0.546  1.00  0.00           H  
HETATM  128  H66 UNL     1      -8.246  -3.162  -0.967  1.00  0.00           H  
HETATM  129  H67 UNL     1      -9.033  -3.268   0.621  1.00  0.00           H  
HETATM  130  H68 UNL     1      -9.060  -0.365   1.637  1.00  0.00           H  
HETATM  131  H69 UNL     1     -10.113  -2.042  -0.652  1.00  0.00           H  
HETATM  132  H70 UNL     1     -11.438  -2.863   1.007  1.00  0.00           H  
HETATM  133  H71 UNL     1     -11.821  -1.260   1.675  1.00  0.00           H  
HETATM  134  H72 UNL     1     -10.321  -2.043   2.234  1.00  0.00           H  
CONECT    1    2   63   64   65
CONECT    2    3    7   66
CONECT    3    4   67   68
CONECT    4    5   69   70
CONECT    5    6    8   61
CONECT    6    7
CONECT    7   71   72
CONECT    8    9
CONECT    9   10   60   73
CONECT   10   11   74   75
CONECT   11   12   58   76
CONECT   12   13   55   77
CONECT   13   14   78   79
CONECT   14   15   15   80
CONECT   15   16   53
CONECT   16   17   81   82
CONECT   17   18   51   83
CONECT   18   19
CONECT   19   20   49   84
CONECT   20   21
CONECT   21   22   24   85
CONECT   22   23   86   87
CONECT   23   88
CONECT   24   25   47   89
CONECT   25   26
CONECT   26   27   45   90
CONECT   27   28
CONECT   28   29   30   91
CONECT   29   92   93   94
CONECT   30   31   43   95
CONECT   31   32
CONECT   32   33   41   96
CONECT   33   34
CONECT   34   35   37   97
CONECT   35   36   98   99
CONECT   36  100
CONECT   37   38   39  101
CONECT   38  102
CONECT   39   40   41  103
CONECT   40  104
CONECT   41   42  105
CONECT   42  106
CONECT   43   44   45  107
CONECT   44  108
CONECT   45   46  109
CONECT   46  110
CONECT   47   48   49  111
CONECT   48  112
CONECT   49   50  113
CONECT   50  114
CONECT   51   52  115  116
CONECT   52   53  117  118
CONECT   53   54   55
CONECT   54  119  120  121
CONECT   55   56  122
CONECT   56   57  123  124
CONECT   57   58  125  126
CONECT   58   59   60
CONECT   59  127  128  129
CONECT   60   61  130
CONECT   61   62  131
CONECT   62  132  133  134
END

HMDB0040535
     RDKit          3D
Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside]
134142  0  0  0  0  0  0  0  0999 V2000
  -13.7665    2.7796   -1.1680 C   0  0  0  0  0  0  0  0  0  0  0  0
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M  END

View in JSmol View Stereo Labels

Synonyms

Not Available

Chemical Formula

C₄₅H₇₂O₁₇

Average Molecular Weight

885.043

Monoisotopic Molecular Weight

884.476950878

IUPAC Name

2-[(6-{[4,5-dihydroxy-2-(hydroxymethyl)-6-{5,7',9',13'-tetramethyl-5'-oxaspiro[oxane-2,6'-pentacyclo[10.8.0.0²,⁹.0⁴,⁸.0¹³,¹⁸]icosan]-18'-eneoxy}oxan-3-yl]oxy}-4,5-dihydroxy-2-methyloxan-3-yl)oxy]-6-(hydroxymethyl)oxane-3,4,5-triol

Traditional Name

CAS Registry Number

113576-38-8

SMILES

CC1C2C(CC3C4CC=C5CC(CCC5(C)C4CCC23C)OC2OC(CO)C(OC3OC(C)C(OC4OC(CO)C(O)C(O)C4O)C(O)C3O)C(O)C2O)OC11CCC(C)CO1

InChI Identifier

InChI=1S/C45H72O17/c1-19-8-13-45(55-18-19)20(2)30-27(62-45)15-26-24-7-6-22-14-23(9-11-43(22,4)25(24)10-12-44(26,30)5)57-41-37(54)34(51)39(29(17-47)59-41)61-40-36(53)33(50)38(21(3)56-40)60-42-35(52)32(49)31(48)28(16-46)58-42/h6,19-21,23-42,46-54H,7-18H2,1-5H3

InChI Key

YIINVROKKFPIQD-UHFFFAOYSA-N

Chemical Taxonomy

Classification

Not classified

Ontology

Physiological effect

Not Available

Disposition

Biological location

Cell membrane (HMDB: HMDB0040535)

Biofluid or Excreta

Urine (HMDB: HMDB0040535)

Tissue substructure

Hepatic tissue (HMDB: HMDB0040535)

Cellular substructure

Route of exposure

Enteral

Ingestion (HMDB: HMDB0040535)

Source

Endogenous

Endogenous (HMDB: HMDB0040535)

Plant

Plant (HMDB: HMDB0040535)

Animal

Animal (HMDB: HMDB0040535)

Exogenous

Food

Food (HMDB: HMDB0040535)

Vegetable

Onion-family vegetable

Garden onion (var.) (FooDB: FOOD00226)
Green onion (FooDB: FOOD00963)
Onion-family vegetables (FooDB: FOOD00855)
Red onion (FooDB: FOOD00962)
Garden onion (FooDB: FOOD00006)

Herb and spice

Herb

Welsh onion (FooDB: FOOD00241)

Process

Naturally occurring process

Biological process

Chemical reaction

Lipid peroxidation (HMDB: HMDB0040535)

Biochemical process

Fatty acid metabolism (HMDB: HMDB0040535)

Cellular process

Cell signaling (HMDB: HMDB0040535)

Biochemical pathway

Lipid metabolism pathway (HMDB: HMDB0040535)

Role

Biological role

Membrane stabilizer (HMDB: HMDB0040535)

Nutrient

Nutrient (HMDB: HMDB0040535)

Molecular messenger

Signaling molecule (HMDB: HMDB0040535)

Industrial application

Manufacturing industry

Material processing agent

Fluid processing agent

Surfactant

Surfactant (HMDB: HMDB0040535)

Emulsifier (HMDB: HMDB0040535)

Physical Properties

State

Not Available

Experimental Molecular Properties

Property	Value	Reference
Melting Point	Not Available	Not Available
Boiling Point	Not Available	Not Available
Water Solubility	Not Available	Not Available
LogP	Not Available	Not Available

Experimental Chromatographic Properties

Not Available

Predicted Molecular Properties

Property	Value	Source
Water Solubility	0.28 g/L	ALOGPS
logP	0.8	ALOGPS
logP	0.66	ChemAxon
logS	-3.5	ALOGPS
pKa (Strongest Acidic)	11.78	ChemAxon
pKa (Strongest Basic)	-3	ChemAxon
Physiological Charge	0	ChemAxon
Hydrogen Acceptor Count	17	ChemAxon
Hydrogen Donor Count	9	ChemAxon
Polar Surface Area	255.91 Å²	ChemAxon
Rotatable Bond Count	8	ChemAxon
Refractivity	215.96 m³·mol⁻¹	ChemAxon
Polarizability	96.8 Å³	ChemAxon
Number of Rings	9	ChemAxon
Bioavailability	No	ChemAxon
Rule of Five	No	ChemAxon
Ghose Filter	No	ChemAxon
Veber's Rule	No	ChemAxon
MDDR-like Rule	Yes	ChemAxon

Predicted Chromatographic Properties

Predicted Collision Cross Sections

Predictor	Adduct Type	CCS Value (Å²)	Reference
DeepCCS	[M-2H]-	315.499	30932474
DeepCCS	[M+Na]+	290.023	30932474
AllCCS	[M+H]+	282.7	32859911
AllCCS	[M+H-H2O]+	283.0	32859911
AllCCS	[M+NH4]+	282.3	32859911
AllCCS	[M+Na]+	282.2	32859911
AllCCS	[M-H]-	256.7	32859911
AllCCS	[M+Na-2H]-	262.7	32859911
AllCCS	[M+HCOO]-	269.3	32859911

Predicted Kovats Retention Indices

Underivatized

Metabolite	SMILES	Kovats RI Value	Column Type	Reference
Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside]	CC1C2C(CC3C4CC=C5CC(CCC5(C)C4CCC23C)OC2OC(CO)C(OC3OC(C)C(OC4OC(CO)C(O)C(O)C4O)C(O)C3O)C(O)C2O)OC11CCC(C)CO1	4312.1	Standard polar	33892256
Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside]	CC1C2C(CC3C4CC=C5CC(CCC5(C)C4CCC23C)OC2OC(CO)C(OC3OC(C)C(OC4OC(CO)C(O)C(O)C4O)C(O)C3O)C(O)C2O)OC11CCC(C)CO1	5400.1	Standard non polar	33892256
Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside]	CC1C2C(CC3C4CC=C5CC(CCC5(C)C4CCC23C)OC2OC(CO)C(OC3OC(C)C(OC4OC(CO)C(O)C(O)C4O)C(O)C3O)C(O)C2O)OC11CCC(C)CO1	6542.2	Semi standard non polar	33892256

Spectra

MS/MS Spectra

Spectrum Type	Description	Splash Key	Deposition Date	Source	View
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 10V, Negative-QTOF	splash10-02u0-6333640590-d27e751aadc334cd43b8	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 20V, Negative-QTOF	splash10-03di-3323950330-b7032f898bd846f6eba7	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 40V, Negative-QTOF	splash10-03fr-4611930000-1a551f4a617a52cc23f9	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 10V, Negative-QTOF	splash10-001i-0000000190-64e67b0b205ce5811371	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 20V, Negative-QTOF	splash10-0a59-4404120190-ea6d03e557a3de5e0d34	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 40V, Negative-QTOF	splash10-01ow-7910440110-fdc3281dff8e213fe9b9	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 10V, Positive-QTOF	splash10-066r-8106880980-fe67c4c80f4a574ced6e	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 20V, Positive-QTOF	splash10-066r-4223960300-f3d4cdc5b114c340fc7a	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 40V, Positive-QTOF	splash10-014i-9405730110-5ab2f0d2ef826e359161	2017-09-01	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 10V, Positive-QTOF	splash10-000j-0502020290-e0cbfd904418f39f0116	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 20V, Positive-QTOF	splash10-00mk-0904120020-09d97d6f10a233a6d444	2021-09-22	Wishart Lab	View Spectrum
Predicted LC-MS/MS	Predicted LC-MS/MS Spectrum - Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] 40V, Positive-QTOF	splash10-000b-4912400010-e383304e6531755f0fb3	2021-09-22	Wishart Lab	View Spectrum

Biological Properties

Cellular Locations

Cytoplasm
Extracellular
Membrane

Biospecimen Locations

Not Available

Tissue Locations

Not Available

Pathways

Not Available

Name	SMPDB/PathBank	KEGG

Normal Concentrations

Not Available

Abnormal Concentrations

Not Available

Associated Disorders and Diseases

Disease References

None

Associated OMIM IDs

None

External Links

Not Available

References

Synthesis Reference

Not Available

Material Safety Data Sheet (MSDS)

Not Available

General References

Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
(). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.

Showing metabocard for Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside] (HMDB0040535)

MOL for HMDB0040535 (Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside])

3D MOL for HMDB0040535 (Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside])

3D SDF for HMDB0040535 (Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside])

3D-SDF for HMDB0040535 (Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside])

PDB for HMDB0040535 (Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside])

3D PDB for HMDB0040535 (Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside])

SMILES for HMDB0040535 (Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside])

INCHI for HMDB0040535 (Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside])

Structure for HMDB0040535 (Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside])

3D Structure for HMDB0040535 (Diosgenin 3-[glucosyl-(1->4)-rhamnosyl-(1->4)-glucoside])

Predicted Collision Cross Sections

Predicted Kovats Retention Indices

Underivatized

MS/MS Spectra