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Version5.0
StatusExpected but not Quantified
Creation Date2012-09-12 03:12:42 UTC
Update Date2022-03-07 02:57:03 UTC
HMDB IDHMDB0041523
Secondary Accession Numbers
  • HMDB41523
Metabolite Identification
Common Namecis-Goniothalamicin
Descriptioncis-Goniothalamicin belongs to the class of organic compounds known as annonaceous acetogenins. These are waxy derivatives of fatty acids (usually C32 or C34), containing a terminal carboxylic acid combined with a 2-propanol unit at the C-2 position to form a methyl- substituted alpha,beta-unsaturated-gamma-lactone. One of their interesting structural features is a single, adjacent, or nonadjacent tetrahydrofuran (THF) or tetrahydropyran (THP) system with one or two flanking hydroxyl group(s) at the center of a long hydrocarbon chain. Based on a literature review a small amount of articles have been published on cis-Goniothalamicin.
Structure
Data?1563863673
Synonyms
ValueSource
2-BromodibenzothiopheneHMDB
GoniothalamicinMeSH
Chemical FormulaC35H64O7
Average Molecular Weight596.8785
Monoisotopic Molecular Weight596.465204402
IUPAC Name5-methyl-3-{2,8,11-trihydroxy-11-[5-(1-hydroxypentadecyl)oxolan-2-yl]undecyl}-2,5-dihydrofuran-2-one
Traditional Namegoniothalamicin
CAS Registry Number172586-14-0
SMILES
CCCCCCCCCCCCCCC(O)C1CCC(O1)C(O)CCC(O)CCCCCC(O)CC1=CC(C)OC1=O
InChI Identifier
InChI=1S/C35H64O7/c1-3-4-5-6-7-8-9-10-11-12-13-17-20-31(38)33-23-24-34(42-33)32(39)22-21-29(36)18-15-14-16-19-30(37)26-28-25-27(2)41-35(28)40/h25,27,29-34,36-39H,3-24,26H2,1-2H3
InChI KeyNBVJDUCRUAUMAA-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as annonaceous acetogenins. These are waxy derivatives of fatty acids (usually C32 or C34), containing a terminal carboxylic acid combined with a 2-propanol unit at the C-2 position to form a methyl- substituted alpha,beta-unsaturated-gamma-lactone. One of their interesting structural features is a single, adjacent, or nonadjacent tetrahydrofuran (THF) or tetrahydropyran (THP) system with one or two flanking hydroxyl group(s) at the center of a long hydrocarbon chain.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty alcohols
Direct ParentAnnonaceous acetogenins
Alternative Parents
Substituents
  • Annonaceae acetogenin skeleton
  • Long chain fatty alcohol
  • 2-furanone
  • Dihydrofuran
  • Tetrahydrofuran
  • Alpha,beta-unsaturated carboxylic ester
  • Enoate ester
  • Carboxylic acid ester
  • Lactone
  • Secondary alcohol
  • Monocarboxylic acid or derivatives
  • Oxacycle
  • Ether
  • Dialkyl ether
  • Carboxylic acid derivative
  • Polyol
  • Organoheterocyclic compound
  • Organooxygen compound
  • Hydrocarbon derivative
  • Alcohol
  • Carbonyl group
  • Organic oxide
  • Organic oxygen compound
  • Aliphatic heteromonocyclic compound
Molecular FrameworkAliphatic heteromonocyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
Process
Role
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point80 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0017 g/LALOGPS
logP6.31ALOGPS
logP7.71ChemAxon
logS-5.5ALOGPS
pKa (Strongest Acidic)13.83ChemAxon
pKa (Strongest Basic)-2.7ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count6ChemAxon
Hydrogen Donor Count4ChemAxon
Polar Surface Area116.45 ŲChemAxon
Rotatable Bond Count26ChemAxon
Refractivity169.34 m³·mol⁻¹ChemAxon
Polarizability74.8 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+250.00531661259
DarkChem[M-H]-244.03331661259
DeepCCS[M+H]+252.38530932474
DeepCCS[M-H]-250.02730932474
DeepCCS[M-2H]-283.16130932474
DeepCCS[M+Na]+258.47830932474
AllCCS[M+H]+268.432859911
AllCCS[M+H-H2O]+267.332859911
AllCCS[M+NH4]+269.432859911
AllCCS[M+Na]+269.732859911
AllCCS[M-H]-238.632859911
AllCCS[M+Na-2H]-243.032859911
AllCCS[M+HCOO]-248.132859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
cis-GoniothalamicinCCCCCCCCCCCCCCC(O)C1CCC(O1)C(O)CCC(O)CCCCCC(O)CC1=CC(C)OC1=O4473.2Standard polar33892256
cis-GoniothalamicinCCCCCCCCCCCCCCC(O)C1CCC(O1)C(O)CCC(O)CCCCCC(O)CC1=CC(C)OC1=O3867.2Standard non polar33892256
cis-GoniothalamicinCCCCCCCCCCCCCCC(O)C1CCC(O1)C(O)CCC(O)CCCCCC(O)CC1=CC(C)OC1=O4572.3Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
cis-Goniothalamicin,1TMS,isomer #1CCCCCCCCCCCCCCC(O[Si](C)(C)C)C1CCC(C(O)CCC(O)CCCCCC(O)CC2=CC(C)OC2=O)O14664.3Semi standard non polar33892256
cis-Goniothalamicin,1TMS,isomer #2CCCCCCCCCCCCCCC(O)C1CCC(C(CCC(O)CCCCCC(O)CC2=CC(C)OC2=O)O[Si](C)(C)C)O14674.5Semi standard non polar33892256
cis-Goniothalamicin,1TMS,isomer #3CCCCCCCCCCCCCCC(O)C1CCC(C(O)CCC(CCCCCC(O)CC2=CC(C)OC2=O)O[Si](C)(C)C)O14701.2Semi standard non polar33892256
cis-Goniothalamicin,1TMS,isomer #4CCCCCCCCCCCCCCC(O)C1CCC(C(O)CCC(O)CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C)O14679.4Semi standard non polar33892256
cis-Goniothalamicin,2TMS,isomer #1CCCCCCCCCCCCCCC(O[Si](C)(C)C)C1CCC(C(CCC(O)CCCCCC(O)CC2=CC(C)OC2=O)O[Si](C)(C)C)O14641.6Semi standard non polar33892256
cis-Goniothalamicin,2TMS,isomer #2CCCCCCCCCCCCCCC(O[Si](C)(C)C)C1CCC(C(O)CCC(CCCCCC(O)CC2=CC(C)OC2=O)O[Si](C)(C)C)O14633.1Semi standard non polar33892256
cis-Goniothalamicin,2TMS,isomer #3CCCCCCCCCCCCCCC(O[Si](C)(C)C)C1CCC(C(O)CCC(O)CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C)O14616.1Semi standard non polar33892256
cis-Goniothalamicin,2TMS,isomer #4CCCCCCCCCCCCCCC(O)C1CCC(C(CCC(CCCCCC(O)CC2=CC(C)OC2=O)O[Si](C)(C)C)O[Si](C)(C)C)O14641.9Semi standard non polar33892256
cis-Goniothalamicin,2TMS,isomer #5CCCCCCCCCCCCCCC(O)C1CCC(C(CCC(O)CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C)O[Si](C)(C)C)O14630.2Semi standard non polar33892256
cis-Goniothalamicin,2TMS,isomer #6CCCCCCCCCCCCCCC(O)C1CCC(C(O)CCC(CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C)O[Si](C)(C)C)O14629.6Semi standard non polar33892256
cis-Goniothalamicin,3TMS,isomer #1CCCCCCCCCCCCCCC(O[Si](C)(C)C)C1CCC(C(CCC(CCCCCC(O)CC2=CC(C)OC2=O)O[Si](C)(C)C)O[Si](C)(C)C)O14574.6Semi standard non polar33892256
cis-Goniothalamicin,3TMS,isomer #2CCCCCCCCCCCCCCC(O[Si](C)(C)C)C1CCC(C(CCC(O)CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C)O[Si](C)(C)C)O14556.9Semi standard non polar33892256
cis-Goniothalamicin,3TMS,isomer #3CCCCCCCCCCCCCCC(O[Si](C)(C)C)C1CCC(C(O)CCC(CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C)O[Si](C)(C)C)O14534.6Semi standard non polar33892256
cis-Goniothalamicin,3TMS,isomer #4CCCCCCCCCCCCCCC(O)C1CCC(C(CCC(CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)O14540.3Semi standard non polar33892256
cis-Goniothalamicin,4TMS,isomer #1CCCCCCCCCCCCCCC(O[Si](C)(C)C)C1CCC(C(CCC(CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C)O[Si](C)(C)C)O[Si](C)(C)C)O14457.2Semi standard non polar33892256
cis-Goniothalamicin,1TBDMS,isomer #1CCCCCCCCCCCCCCC(O[Si](C)(C)C(C)(C)C)C1CCC(C(O)CCC(O)CCCCCC(O)CC2=CC(C)OC2=O)O14885.4Semi standard non polar33892256
cis-Goniothalamicin,1TBDMS,isomer #2CCCCCCCCCCCCCCC(O)C1CCC(C(CCC(O)CCCCCC(O)CC2=CC(C)OC2=O)O[Si](C)(C)C(C)(C)C)O14895.8Semi standard non polar33892256
cis-Goniothalamicin,1TBDMS,isomer #3CCCCCCCCCCCCCCC(O)C1CCC(C(O)CCC(CCCCCC(O)CC2=CC(C)OC2=O)O[Si](C)(C)C(C)(C)C)O14915.7Semi standard non polar33892256
cis-Goniothalamicin,1TBDMS,isomer #4CCCCCCCCCCCCCCC(O)C1CCC(C(O)CCC(O)CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C(C)(C)C)O14902.5Semi standard non polar33892256
cis-Goniothalamicin,2TBDMS,isomer #1CCCCCCCCCCCCCCC(O[Si](C)(C)C(C)(C)C)C1CCC(C(CCC(O)CCCCCC(O)CC2=CC(C)OC2=O)O[Si](C)(C)C(C)(C)C)O15079.6Semi standard non polar33892256
cis-Goniothalamicin,2TBDMS,isomer #2CCCCCCCCCCCCCCC(O[Si](C)(C)C(C)(C)C)C1CCC(C(O)CCC(CCCCCC(O)CC2=CC(C)OC2=O)O[Si](C)(C)C(C)(C)C)O15081.3Semi standard non polar33892256
cis-Goniothalamicin,2TBDMS,isomer #3CCCCCCCCCCCCCCC(O[Si](C)(C)C(C)(C)C)C1CCC(C(O)CCC(O)CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C(C)(C)C)O15071.7Semi standard non polar33892256
cis-Goniothalamicin,2TBDMS,isomer #4CCCCCCCCCCCCCCC(O)C1CCC(C(CCC(CCCCCC(O)CC2=CC(C)OC2=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O15087.6Semi standard non polar33892256
cis-Goniothalamicin,2TBDMS,isomer #5CCCCCCCCCCCCCCC(O)C1CCC(C(CCC(O)CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O15080.4Semi standard non polar33892256
cis-Goniothalamicin,2TBDMS,isomer #6CCCCCCCCCCCCCCC(O)C1CCC(C(O)CCC(CCCCCC(CC2=CC(C)OC2=O)O[Si](C)(C)C(C)(C)C)O[Si](C)(C)C(C)(C)C)O15100.7Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (Non-derivatized) - 70eV, Positivesplash10-00p1-1389240000-2c9fda8e3836ed3165842017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (1 TMS) - 70eV, Positivesplash10-0ldi-5149527000-161a2dd95f11efec240e2017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_1_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_1_3) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_1_4) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_2_1) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_2_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_2_3) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_2_4) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_2_5) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_2_6) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_3_1) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_3_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_3_3) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_3_4) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TMS_4_1) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TBDMS_1_1) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TBDMS_1_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TBDMS_1_3) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TBDMS_1_4) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TBDMS_2_1) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TBDMS_2_2) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TBDMS_2_3) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TBDMS_2_4) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - cis-Goniothalamicin GC-MS (TBDMS_2_5) - 70eV, PositiveNot Available2021-10-16Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 10V, Positive-QTOFsplash10-01t9-0010090000-09144a38d8de16ac2c932017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 20V, Positive-QTOFsplash10-0ika-1941560000-9c47624805034198f4872017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 40V, Positive-QTOFsplash10-0hgn-3942240000-bac733e64f3c01a639cc2017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 10V, Negative-QTOFsplash10-0002-0000090000-3e6d52a6bad188af78512017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 20V, Negative-QTOFsplash10-0002-9222260000-4ee038340e8fc94d48922017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 40V, Negative-QTOFsplash10-014i-4295320000-82b9b950fb99a357b8a22017-09-01Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 10V, Negative-QTOFsplash10-0002-2001290000-48a3769b70a233be582c2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 20V, Negative-QTOFsplash10-002b-1483490000-e08d57d7e5d1bab53c012021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 40V, Negative-QTOFsplash10-0api-6592110000-c505589d8696eb2dd5362021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 10V, Positive-QTOFsplash10-03fr-1010390000-37a5492f535d6dd2ed232021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 20V, Positive-QTOFsplash10-03di-3101290000-10ff30616a96d16844df2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - cis-Goniothalamicin 40V, Positive-QTOFsplash10-0006-9100000000-a0c7cfdc9895f5f26d9c2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Extracellular
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB021499
KNApSAcK IDC00044123
Chemspider ID317754
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound357928
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. Simons K, Toomre D: Lipid rafts and signal transduction. Nat Rev Mol Cell Biol. 2000 Oct;1(1):31-9. [PubMed:11413487 ]
  2. Watson AD: Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Lipidomics: a global approach to lipid analysis in biological systems. J Lipid Res. 2006 Oct;47(10):2101-11. Epub 2006 Aug 10. [PubMed:16902246 ]
  3. Sethi JK, Vidal-Puig AJ: Thematic review series: adipocyte biology. Adipose tissue function and plasticity orchestrate nutritional adaptation. J Lipid Res. 2007 Jun;48(6):1253-62. Epub 2007 Mar 20. [PubMed:17374880 ]
  4. Lingwood D, Simons K: Lipid rafts as a membrane-organizing principle. Science. 2010 Jan 1;327(5961):46-50. doi: 10.1126/science.1174621. [PubMed:20044567 ]
  5. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .
  6. Gunstone, Frank D., John L. Harwood, and Albert J. Dijkstra (2007). The lipid handbook with CD-ROM. CRC Press.