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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-07-09 16:09:57 UTC
Update Date2021-09-14 14:58:08 UTC
HMDB IDHMDB0060966
Secondary Accession Numbers
  • HMDB60966
Metabolite Identification
Common Namenorzolmitripan
Descriptionnorzolmitripan is a metabolite of zolmitriptan. Zolmitriptan is a selective serotonin receptor agonist of the 1B and 1D subtypes. It is a triptan, used in the acute treatment of migraine attacks with or without aura and cluster headaches. Zolmitriptan is marketed by AstraZeneca with the brand names Zomig, Zomigon (Argentina, Canada & Greece), AscoTop (Germany) and Zomigoro (France). In 2008, Zomig generated nearly $154 million in sales. (Wikipedia)
Structure
Data?1563866129
SynonymsNot Available
Chemical FormulaC14H17N3O2
Average Molecular Weight259.3037
Monoisotopic Molecular Weight259.132076803
IUPAC Name(4R)-4-{[3-(2-aminoethyl)-1H-indol-5-yl]methyl}-4,5-dihydro-1,3-oxazol-2-ol
Traditional Name(4R)-4-{[3-(2-aminoethyl)-1H-indol-5-yl]methyl}-4,5-dihydro-1,3-oxazol-2-ol
CAS Registry NumberNot Available
SMILES
NCCC1=CNC2=C1C=C(C[C@@H]1COC(O)=N1)C=C2
InChI Identifier
InChI=1S/C14H17N3O2/c15-4-3-10-7-16-13-2-1-9(6-12(10)13)5-11-8-19-14(18)17-11/h1-2,6-7,11,16H,3-5,8,15H2,(H,17,18)/t11-/m1/s1
InChI KeyNKOBWHOGNBPTDO-LLVKDONJSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as tryptamines and derivatives. Tryptamines and derivatives are compounds containing the tryptamine backbone, which is structurally characterized by an indole ring substituted at the 3-position by an ethanamine.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassIndoles and derivatives
Sub ClassTryptamines and derivatives
Direct ParentTryptamines and derivatives
Alternative Parents
Substituents
  • Tryptamine
  • 3-alkylindole
  • Indole
  • 2-arylethylamine
  • Aralkylamine
  • Oxazolidinone
  • Substituted pyrrole
  • Benzenoid
  • Oxazolidine
  • Pyrrole
  • Heteroaromatic compound
  • Carbamic acid ester
  • Carbonic acid derivative
  • Oxacycle
  • Azacycle
  • Hydrocarbon derivative
  • Primary amine
  • Organic oxide
  • Organopnictogen compound
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxygen compound
  • Primary aliphatic amine
  • Organic nitrogen compound
  • Carbonyl group
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.14 g/LALOGPS
logP1.18ALOGPS
logP0.42ChemAxon
logS-3.2ALOGPS
pKa (Strongest Acidic)8.19ChemAxon
pKa (Strongest Basic)9.75ChemAxon
Physiological Charge2ChemAxon
Hydrogen Acceptor Count4ChemAxon
Hydrogen Donor Count3ChemAxon
Polar Surface Area83.63 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity73.16 m³·mol⁻¹ChemAxon
Polarizability27.82 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+159.75431661259
DarkChem[M-H]-159.44631661259
DeepCCS[M+H]+162.08530932474
DeepCCS[M-H]-159.72730932474
DeepCCS[M-2H]-192.61330932474
DeepCCS[M+Na]+168.17930932474
AllCCS[M+H]+161.732859911
AllCCS[M+H-H2O]+158.032859911
AllCCS[M+NH4]+165.232859911
AllCCS[M+Na]+166.232859911
AllCCS[M-H]-165.332859911
AllCCS[M+Na-2H]-165.132859911
AllCCS[M+HCOO]-164.932859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
norzolmitripanNCCC1=CNC2=C1C=C(C[C@@H]1COC(O)=N1)C=C23781.1Standard polar33892256
norzolmitripanNCCC1=CNC2=C1C=C(C[C@@H]1COC(O)=N1)C=C22619.4Standard non polar33892256
norzolmitripanNCCC1=CNC2=C1C=C(C[C@@H]1COC(O)=N1)C=C22836.8Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
norzolmitripan,1TMS,isomer #1C[Si](C)(C)OC1=N[C@H](CC2=CC=C3[NH]C=C(CCN)C3=C2)CO12694.9Semi standard non polar33892256
norzolmitripan,1TMS,isomer #2C[Si](C)(C)NCCC1=C[NH]C2=CC=C(C[C@@H]3COC(O)=N3)C=C122815.9Semi standard non polar33892256
norzolmitripan,1TMS,isomer #3C[Si](C)(C)N1C=C(CCN)C2=CC(C[C@@H]3COC(O)=N3)=CC=C212761.7Semi standard non polar33892256
norzolmitripan,2TMS,isomer #1C[Si](C)(C)NCCC1=C[NH]C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C)=N3)C=C122729.2Semi standard non polar33892256
norzolmitripan,2TMS,isomer #1C[Si](C)(C)NCCC1=C[NH]C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C)=N3)C=C122802.6Standard non polar33892256
norzolmitripan,2TMS,isomer #1C[Si](C)(C)NCCC1=C[NH]C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C)=N3)C=C123908.1Standard polar33892256
norzolmitripan,2TMS,isomer #2C[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN)=CN3[Si](C)(C)C)CO12708.2Semi standard non polar33892256
norzolmitripan,2TMS,isomer #2C[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN)=CN3[Si](C)(C)C)CO12613.0Standard non polar33892256
norzolmitripan,2TMS,isomer #2C[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN)=CN3[Si](C)(C)C)CO13885.3Standard polar33892256
norzolmitripan,2TMS,isomer #3C[Si](C)(C)N(CCC1=C[NH]C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C2937.4Semi standard non polar33892256
norzolmitripan,2TMS,isomer #3C[Si](C)(C)N(CCC1=C[NH]C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C2863.3Standard non polar33892256
norzolmitripan,2TMS,isomer #3C[Si](C)(C)N(CCC1=C[NH]C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C3958.2Standard polar33892256
norzolmitripan,2TMS,isomer #4C[Si](C)(C)NCCC1=CN([Si](C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C122826.2Semi standard non polar33892256
norzolmitripan,2TMS,isomer #4C[Si](C)(C)NCCC1=CN([Si](C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C122757.2Standard non polar33892256
norzolmitripan,2TMS,isomer #4C[Si](C)(C)NCCC1=CN([Si](C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C123821.2Standard polar33892256
norzolmitripan,3TMS,isomer #1C[Si](C)(C)OC1=N[C@H](CC2=CC=C3[NH]C=C(CCN([Si](C)(C)C)[Si](C)(C)C)C3=C2)CO12900.8Semi standard non polar33892256
norzolmitripan,3TMS,isomer #1C[Si](C)(C)OC1=N[C@H](CC2=CC=C3[NH]C=C(CCN([Si](C)(C)C)[Si](C)(C)C)C3=C2)CO12898.1Standard non polar33892256
norzolmitripan,3TMS,isomer #1C[Si](C)(C)OC1=N[C@H](CC2=CC=C3[NH]C=C(CCN([Si](C)(C)C)[Si](C)(C)C)C3=C2)CO13725.2Standard polar33892256
norzolmitripan,3TMS,isomer #2C[Si](C)(C)NCCC1=CN([Si](C)(C)C)C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C)=N3)C=C122745.8Semi standard non polar33892256
norzolmitripan,3TMS,isomer #2C[Si](C)(C)NCCC1=CN([Si](C)(C)C)C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C)=N3)C=C122782.6Standard non polar33892256
norzolmitripan,3TMS,isomer #2C[Si](C)(C)NCCC1=CN([Si](C)(C)C)C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C)=N3)C=C123611.9Standard polar33892256
norzolmitripan,3TMS,isomer #3C[Si](C)(C)N(CCC1=CN([Si](C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C2945.3Semi standard non polar33892256
norzolmitripan,3TMS,isomer #3C[Si](C)(C)N(CCC1=CN([Si](C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C2926.4Standard non polar33892256
norzolmitripan,3TMS,isomer #3C[Si](C)(C)N(CCC1=CN([Si](C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C3656.8Standard polar33892256
norzolmitripan,4TMS,isomer #1C[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN([Si](C)(C)C)[Si](C)(C)C)=CN3[Si](C)(C)C)CO12918.2Semi standard non polar33892256
norzolmitripan,4TMS,isomer #1C[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN([Si](C)(C)C)[Si](C)(C)C)=CN3[Si](C)(C)C)CO12888.9Standard non polar33892256
norzolmitripan,4TMS,isomer #1C[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN([Si](C)(C)C)[Si](C)(C)C)=CN3[Si](C)(C)C)CO13474.1Standard polar33892256
norzolmitripan,1TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=N[C@H](CC2=CC=C3[NH]C=C(CCN)C3=C2)CO12916.3Semi standard non polar33892256
norzolmitripan,1TBDMS,isomer #2CC(C)(C)[Si](C)(C)NCCC1=C[NH]C2=CC=C(C[C@@H]3COC(O)=N3)C=C123063.0Semi standard non polar33892256
norzolmitripan,1TBDMS,isomer #3CC(C)(C)[Si](C)(C)N1C=C(CCN)C2=CC(C[C@@H]3COC(O)=N3)=CC=C212991.2Semi standard non polar33892256
norzolmitripan,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)NCCC1=C[NH]C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C(C)(C)C)=N3)C=C123190.2Semi standard non polar33892256
norzolmitripan,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)NCCC1=C[NH]C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C(C)(C)C)=N3)C=C123145.9Standard non polar33892256
norzolmitripan,2TBDMS,isomer #1CC(C)(C)[Si](C)(C)NCCC1=C[NH]C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C(C)(C)C)=N3)C=C123856.8Standard polar33892256
norzolmitripan,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN)=CN3[Si](C)(C)C(C)(C)C)CO13103.4Semi standard non polar33892256
norzolmitripan,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN)=CN3[Si](C)(C)C(C)(C)C)CO12945.8Standard non polar33892256
norzolmitripan,2TBDMS,isomer #2CC(C)(C)[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN)=CN3[Si](C)(C)C(C)(C)C)CO13816.2Standard polar33892256
norzolmitripan,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(CCC1=C[NH]C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C(C)(C)C3349.9Semi standard non polar33892256
norzolmitripan,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(CCC1=C[NH]C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C(C)(C)C3274.2Standard non polar33892256
norzolmitripan,2TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(CCC1=C[NH]C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C(C)(C)C3947.8Standard polar33892256
norzolmitripan,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)NCCC1=CN([Si](C)(C)C(C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C123244.2Semi standard non polar33892256
norzolmitripan,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)NCCC1=CN([Si](C)(C)C(C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C123170.7Standard non polar33892256
norzolmitripan,2TBDMS,isomer #4CC(C)(C)[Si](C)(C)NCCC1=CN([Si](C)(C)C(C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C123836.8Standard polar33892256
norzolmitripan,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=N[C@H](CC2=CC=C3[NH]C=C(CCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C3=C2)CO13529.5Semi standard non polar33892256
norzolmitripan,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=N[C@H](CC2=CC=C3[NH]C=C(CCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C3=C2)CO13434.7Standard non polar33892256
norzolmitripan,3TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=N[C@H](CC2=CC=C3[NH]C=C(CCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)C3=C2)CO13748.2Standard polar33892256
norzolmitripan,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)NCCC1=CN([Si](C)(C)C(C)(C)C)C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C(C)(C)C)=N3)C=C123327.1Semi standard non polar33892256
norzolmitripan,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)NCCC1=CN([Si](C)(C)C(C)(C)C)C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C(C)(C)C)=N3)C=C123278.7Standard non polar33892256
norzolmitripan,3TBDMS,isomer #2CC(C)(C)[Si](C)(C)NCCC1=CN([Si](C)(C)C(C)(C)C)C2=CC=C(C[C@@H]3COC(O[Si](C)(C)C(C)(C)C)=N3)C=C123674.5Standard polar33892256
norzolmitripan,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(CCC1=CN([Si](C)(C)C(C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C(C)(C)C3523.5Semi standard non polar33892256
norzolmitripan,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(CCC1=CN([Si](C)(C)C(C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C(C)(C)C3506.6Standard non polar33892256
norzolmitripan,3TBDMS,isomer #3CC(C)(C)[Si](C)(C)N(CCC1=CN([Si](C)(C)C(C)(C)C)C2=CC=C(C[C@@H]3COC(O)=N3)C=C12)[Si](C)(C)C(C)(C)C3743.0Standard polar33892256
norzolmitripan,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=CN3[Si](C)(C)C(C)(C)C)CO13666.1Semi standard non polar33892256
norzolmitripan,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=CN3[Si](C)(C)C(C)(C)C)CO13515.3Standard non polar33892256
norzolmitripan,4TBDMS,isomer #1CC(C)(C)[Si](C)(C)OC1=N[C@H](CC2=CC=C3C(=C2)C(CCN([Si](C)(C)C(C)(C)C)[Si](C)(C)C(C)(C)C)=CN3[Si](C)(C)C(C)(C)C)CO13621.0Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - norzolmitripan GC-MS (Non-derivatized) - 70eV, Positivesplash10-001i-9670000000-b46d1cb9545503a68a762017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - norzolmitripan GC-MS (1 TMS) - 70eV, Positivesplash10-00di-9822000000-912b335bc79ca9e71c042017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - norzolmitripan GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 10V, Positive-QTOFsplash10-03dl-0190000000-f0c3496e83a1e884833b2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 20V, Positive-QTOFsplash10-0006-1590000000-f40c9b24f4d9a49d2a022017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 40V, Positive-QTOFsplash10-0596-1900000000-4e0842b14513a04da8cb2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 10V, Negative-QTOFsplash10-0a4i-1090000000-1a5f1628882a3152b57f2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 20V, Negative-QTOFsplash10-0006-9070000000-b24fbcc37e744bd339492017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 40V, Negative-QTOFsplash10-0006-9300000000-67dbb5bebc1433eb58662017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 10V, Positive-QTOFsplash10-03di-0190000000-7ca1248285dd5e571a832021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 20V, Positive-QTOFsplash10-052f-0950000000-1be5ba0e3113fed120f92021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 40V, Positive-QTOFsplash10-0zfv-0900000000-19aaec2fa6c1cca7d01b2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 10V, Negative-QTOFsplash10-0a4i-0090000000-4a99fa21ccf79d82779a2021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 20V, Negative-QTOFsplash10-0a4i-2190000000-2783e2c3a2f3f2e419d42021-09-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - norzolmitripan 40V, Negative-QTOFsplash10-0006-6940000000-e1f27cfa030cda438aec2021-09-24Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound29978255
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available