Hmdb loader
Survey
You are using an unsupported browser. Please upgrade your browser to a newer version to get the best experience on Human Metabolome Database.
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2013-07-09 16:16:02 UTC
Update Date2019-07-23 07:15:41 UTC
HMDB IDHMDB0061062
Secondary Accession Numbers
  • HMDB61062
Metabolite Identification
Common Name7-hydroxygranisetron
Description7-hydroxygranisetron is a metabolite of granisetron. Granisetron is a serotonin 5-HT3 receptor antagonist used as an antiemetic to treat nausea and vomiting following chemotherapy. Its main effect is to reduce the activity of the vagus nerve, which is a nerve that activates the vomiting center in the medulla oblongata. It does not have much effect on vomiting due to motion sickness. This drug does not have any effect on dopamine receptors or muscarinic receptors. (Wikipedia)
Structure
Data?1563866141
Synonyms
ValueSource
7-Hydroxy-1-methyl-N-(endo-9-methyl-9-azabicyclo(3.3.1)non-3-yl)-1H-indazole-3-carboxamideMeSH
Chemical FormulaC18H24N4O2
Average Molecular Weight328.4088
Monoisotopic Molecular Weight328.189926032
IUPAC Name7-hydroxy-1-methyl-N-[(1S,5S)-9-methyl-9-azabicyclo[3.3.1]nonan-3-yl]-1H-indazole-3-carboximidic acid
Traditional Name7-hydroxy-1-methyl-N-[(1S,5S)-9-methyl-9-azabicyclo[3.3.1]nonan-3-yl]indazole-3-carboximidic acid
CAS Registry NumberNot Available
SMILES
[H][C@]12CCC[C@@]([H])(CC(C1)N=C(O)C1=NN(C)C3=C1C=CC=C3O)N2C
InChI Identifier
InChI=1S/C18H24N4O2/c1-21-12-5-3-6-13(21)10-11(9-12)19-18(24)16-14-7-4-8-15(23)17(14)22(2)20-16/h4,7-8,11-13,23H,3,5-6,9-10H2,1-2H3,(H,19,24)/t12-,13-/m0/s1
InChI KeyAJEBHUMZPBDLQF-STQMWFEESA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as indazole-3-carboxamides. These are aromatic compounds containing an indazole ring system that is substituted at the 3-position with a carboxamide group.
KingdomOrganic compounds
Super ClassOrganoheterocyclic compounds
ClassBenzopyrazoles
Sub ClassIndazoles
Direct ParentIndazole-3-carboxamides
Alternative Parents
Substituents
  • Indazole-3-carboxamide
  • 2-heteroaryl carboxamide
  • Pyrazole-5-carboxamide
  • 1-hydroxy-4-unsubstituted benzenoid
  • 1-hydroxy-2-unsubstituted benzenoid
  • Piperidine
  • Benzenoid
  • Azole
  • Pyrazole
  • Heteroaromatic compound
  • Carboxamide group
  • Secondary carboxylic acid amide
  • Tertiary amine
  • Tertiary aliphatic amine
  • Amino acid or derivatives
  • Carboxylic acid derivative
  • Azacycle
  • Organic oxygen compound
  • Organic nitrogen compound
  • Amine
  • Organooxygen compound
  • Organonitrogen compound
  • Organic oxide
  • Organopnictogen compound
  • Hydrocarbon derivative
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.34 g/LALOGPS
logP2.55ALOGPS
logP0.0053ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)6.78ChemAxon
pKa (Strongest Basic)9.64ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count5ChemAxon
Hydrogen Donor Count2ChemAxon
Polar Surface Area73.88 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity104.33 m³·mol⁻¹ChemAxon
Polarizability36.82 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+176.69831661259
DarkChem[M-H]-174.1931661259
DeepCCS[M-2H]-212.28330932474
DeepCCS[M+Na]+187.04830932474
AllCCS[M+H]+181.232859911
AllCCS[M+H-H2O]+178.332859911
AllCCS[M+NH4]+183.932859911
AllCCS[M+Na]+184.732859911
AllCCS[M-H]-180.832859911
AllCCS[M+Na-2H]-180.832859911
AllCCS[M+HCOO]-180.832859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
7-hydroxygranisetron[H][C@]12CCC[C@@]([H])(CC(C1)N=C(O)C1=NN(C)C3=C1C=CC=C3O)N2C3136.4Standard polar33892256
7-hydroxygranisetron[H][C@]12CCC[C@@]([H])(CC(C1)N=C(O)C1=NN(C)C3=C1C=CC=C3O)N2C2786.9Standard non polar33892256
7-hydroxygranisetron[H][C@]12CCC[C@@]([H])(CC(C1)N=C(O)C1=NN(C)C3=C1C=CC=C3O)N2C3035.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
7-hydroxygranisetron,1TMS,isomer #1CN1[C@H]2CCC[C@H]1CC(N=C(O[Si](C)(C)C)C1=NN(C)C3=C(O)C=CC=C13)C22976.0Semi standard non polar33892256
7-hydroxygranisetron,1TMS,isomer #2CN1[C@H]2CCC[C@H]1CC(N=C(O)C1=NN(C)C3=C(O[Si](C)(C)C)C=CC=C13)C22935.9Semi standard non polar33892256
7-hydroxygranisetron,2TMS,isomer #1CN1[C@H]2CCC[C@H]1CC(N=C(O[Si](C)(C)C)C1=NN(C)C3=C(O[Si](C)(C)C)C=CC=C13)C22919.8Semi standard non polar33892256
7-hydroxygranisetron,1TBDMS,isomer #1CN1[C@H]2CCC[C@H]1CC(N=C(O[Si](C)(C)C(C)(C)C)C1=NN(C)C3=C(O)C=CC=C13)C23160.9Semi standard non polar33892256
7-hydroxygranisetron,1TBDMS,isomer #2CN1[C@H]2CCC[C@H]1CC(N=C(O)C1=NN(C)C3=C(O[Si](C)(C)C(C)(C)C)C=CC=C13)C23155.7Semi standard non polar33892256
7-hydroxygranisetron,2TBDMS,isomer #1CN1[C@H]2CCC[C@H]1CC(N=C(O[Si](C)(C)C(C)(C)C)C1=NN(C)C3=C(O[Si](C)(C)C(C)(C)C)C=CC=C13)C23267.3Semi standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - 7-hydroxygranisetron GC-MS (Non-derivatized) - 70eV, Positivesplash10-03dj-2913000000-cfd8549b36cc6cef1d822017-09-20Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 7-hydroxygranisetron GC-MS (2 TMS) - 70eV, Positivesplash10-0a4i-3312900000-c1477c19aee2b226c2492017-10-06Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - 7-hydroxygranisetron GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 10V, Positive-QTOFsplash10-0fb9-0908000000-bffe52218690e6cdcb0c2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 20V, Positive-QTOFsplash10-0udi-0900000000-e58067aca9868fe93b952017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 40V, Positive-QTOFsplash10-0079-1900000000-b6ba492ff297876aef9f2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 10V, Negative-QTOFsplash10-004i-0209000000-e2d87dd41d2cbeaafa6d2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 20V, Negative-QTOFsplash10-004j-0905000000-05769e0fe750a35680652017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 40V, Negative-QTOFsplash10-0fk9-0900000000-9e880694609c0776b01c2017-10-06Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 10V, Negative-QTOFsplash10-004i-0109000000-79f6950070d7498245312021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 20V, Negative-QTOFsplash10-004i-0119000000-ac8f1e9d38f9e39776ac2021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 40V, Negative-QTOFsplash10-0037-3911000000-aa935fbaa653792d22aa2021-09-21Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 10V, Positive-QTOFsplash10-004i-0009000000-764f98249dcab2b4ea512021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 20V, Positive-QTOFsplash10-01t9-0029000000-153ce817265b2495dde82021-09-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - 7-hydroxygranisetron 40V, Positive-QTOFsplash10-0ac9-1935000000-08c0f397dc87562c4cc82021-09-25Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
Biospecimen Locations
  • Blood
  • Urine
Tissue Locations
  • Kidney
  • Liver
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableNormal
      Not Available
details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem Compound46233635
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available