Hmdb loader
Survey
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2017-02-24 01:29:45 UTC
Update Date2021-09-14 14:59:50 UTC
HMDB IDHMDB0062201
Secondary Accession Numbers
  • HMDB62201
Metabolite Identification
Common Name(3S,13Z)-3-Hydroxyicosenoyl-CoA
Description(2R)-4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-N-{2-[(2-{[(3S,13Z)-3-hydroxyicos-13-enoyl]sulfanyl}ethyl)-C-hydroxycarbonimidoyl]ethyl}-3,3-dimethylbutanimidic acid belongs to the class of organic compounds known as long-chain fatty acyl coas. These are acyl CoAs where the group acylated to the coenzyme A moiety is a long aliphatic chain of 13 to 21 carbon atoms (2R)-4-({[({[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)oxolan-2-yl]methoxy}(hydroxy)phosphoryl)oxy](hydroxy)phosphoryl}oxy)-2-hydroxy-N-{2-[(2-{[(3S,13Z)-3-hydroxyicos-13-enoyl]sulfanyl}ethyl)-C-hydroxycarbonimidoyl]ethyl}-3,3-dimethylbutanimidic acid is a strong basic compound (based on its pKa).
Structure
Data?1563866278
Synonyms
ValueSource
(3S,13Z)-3-Hydroxyicosenoyl-CoAHMDB
(3S,13Z)-3-Hydroxyeicosenoyl-CoAGenerator, HMDB
3S-Hydroxy-13Z-icosenoyl-CoAHMDB
3S-Hydroxy-13Z-eicosenoyl-CoAGenerator, HMDB
3(S)-Hydroxy-13-cis-icosenoyl-CoAHMDB
3(S)-Hydroxy-13-cis-eicosenoyl-CoAGenerator, HMDB
(3S,13Z)-3-Hydroxyicosenoyl-coenzyme AGenerator, HMDB
(3S,13Z)-3-Hydroxyeicosenoyl-coenzyme AGenerator, HMDB
3S-Hydroxy-13Z-icosenoyl-coenzyme AGenerator, HMDB
3S-Hydroxy-13Z-eicosenoyl-coenzyme AGenerator, HMDB
3(S)-Hydroxy-13-cis-icosenoyl-coenzyme AGenerator, HMDB
3(S)-Hydroxy-13-cis-eicosenoyl-coenzyme AGenerator, HMDB
Chemical FormulaC41H72N7O18P3S
Average Molecular Weight1076.04
Monoisotopic Molecular Weight1075.386740674
IUPAC Name{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-2-({[hydroxy({hydroxy[(3R)-3-hydroxy-3-({2-[(2-{[(3S,13Z)-3-hydroxyicos-13-enoyl]sulfanyl}ethyl)carbamoyl]ethyl}carbamoyl)-2,2-dimethylpropoxy]phosphoryl}oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxy}phosphonic acid
Traditional Name[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-2-({[hydroxy([hydroxy((3R)-3-hydroxy-3-({2-[(2-{[(3S,13Z)-3-hydroxyicos-13-enoyl]sulfanyl}ethyl)carbamoyl]ethyl}carbamoyl)-2,2-dimethylpropoxy)phosphoryl]oxy)phosphoryl]oxy}methyl)oxolan-3-yl]oxyphosphonic acid
CAS Registry NumberNot Available
SMILES
CCCCCC\C=C/CCCCCCCCC[C@H](O)CC(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)COP(O)(=O)OP(O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1OP(O)(O)=O)N1C=NC2=C1N=CN=C2N
InChI Identifier
InChI=1S/C41H72N7O18P3S/c1-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-29(49)24-32(51)70-23-22-43-31(50)20-21-44-39(54)36(53)41(2,3)26-63-69(60,61)66-68(58,59)62-25-30-35(65-67(55,56)57)34(52)40(64-30)48-28-47-33-37(42)45-27-46-38(33)48/h9-10,27-30,34-36,40,49,52-53H,4-8,11-26H2,1-3H3,(H,43,50)(H,44,54)(H,58,59)(H,60,61)(H2,42,45,46)(H2,55,56,57)/b10-9-/t29-,30+,34+,35+,36-,40+/m0/s1
InChI KeyMNTYKYKLBOOZFS-LRZFLKDSSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as long-chain fatty acyl coas. These are acyl CoAs where the group acylated to the coenzyme A moiety is a long aliphatic chain of 13 to 21 carbon atoms.
KingdomOrganic compounds
Super ClassLipids and lipid-like molecules
ClassFatty Acyls
Sub ClassFatty acyl thioesters
Direct ParentLong-chain fatty acyl CoAs
Alternative Parents
Substituents
  • Coenzyme a or derivatives
  • Purine ribonucleoside diphosphate
  • Purine ribonucleoside bisphosphate
  • Purine ribonucleoside 3',5'-bisphosphate
  • Ribonucleoside 3'-phosphate
  • Pentose-5-phosphate
  • Pentose phosphate
  • N-glycosyl compound
  • Glycosyl compound
  • Pentose monosaccharide
  • Organic pyrophosphate
  • Monosaccharide phosphate
  • 6-aminopurine
  • Purine
  • Imidazopyrimidine
  • Monoalkyl phosphate
  • Aminopyrimidine
  • Imidolactam
  • Alkyl phosphate
  • Pyrimidine
  • Phosphoric acid ester
  • Organic phosphoric acid derivative
  • N-substituted imidazole
  • Monosaccharide
  • Heteroaromatic compound
  • Tetrahydrofuran
  • Imidazole
  • Azole
  • Carbothioic s-ester
  • Thiocarboxylic acid ester
  • Secondary alcohol
  • Amino acid or derivatives
  • Oxacycle
  • Azacycle
  • Organoheterocyclic compound
  • Organic 1,3-dipolar compound
  • Propargyl-type 1,3-dipolar organic compound
  • Sulfenyl compound
  • Thiocarboxylic acid or derivatives
  • Carboxylic acid derivative
  • Carboximidic acid derivative
  • Carboximidic acid
  • Organic nitrogen compound
  • Organic oxygen compound
  • Organopnictogen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Primary amine
  • Organosulfur compound
  • Organooxygen compound
  • Organonitrogen compound
  • Carbonyl group
  • Amine
  • Alcohol
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
DispositionNot Available
ProcessNot Available
RoleNot Available
Physical Properties
StateNot Available
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
logP2.68ALOGPS
logP0.78ChemAxon
logS-3ALOGPS
pKa (Strongest Acidic)0.82ChemAxon
pKa (Strongest Basic)4.01ChemAxon
Physiological Charge-4ChemAxon
Hydrogen Acceptor Count18ChemAxon
Hydrogen Donor Count10ChemAxon
Polar Surface Area383.86 ŲChemAxon
Rotatable Bond Count37ChemAxon
Refractivity257.68 m³·mol⁻¹ChemAxon
Polarizability107.75 ųChemAxon
Number of Rings3ChemAxon
BioavailabilityNoChemAxon
Rule of FiveNoChemAxon
Ghose FilterNoChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleYesChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DeepCCS[M+H]+282.43330932474
DeepCCS[M-H]-280.7130932474
DeepCCS[M-2H]-315.25730932474
DeepCCS[M+Na]+288.9430932474

Predicted Kovats Retention Indices

Not Available
Spectra

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 10V, Positive-QTOFsplash10-000i-5901120200-7e128784822640fcf1d72019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 20V, Positive-QTOFsplash10-000i-0913140000-2dd5dbe9c012bb4d1d212019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 40V, Positive-QTOFsplash10-000i-1900010000-e464b86674b7916aa14a2019-02-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 10V, Negative-QTOFsplash10-0560-9633240510-23065e67092a69a033872019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 20V, Negative-QTOFsplash10-0560-5911310100-d01b339fa123b9b4e23a2019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 40V, Negative-QTOFsplash10-057i-5900100000-174cf533c5211c284c352019-02-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 10V, Positive-QTOFsplash10-056r-9000000000-21704dc57dabf3e9731b2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 20V, Positive-QTOFsplash10-000l-8901100146-0ba33269e777f83b318c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 40V, Positive-QTOFsplash10-014i-0100390000-bf61f5aeb21dd2fc02d82021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 10V, Negative-QTOFsplash10-00di-9000000000-fc3946e1b133e79fa9c82021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 20V, Negative-QTOFsplash10-0adi-9200101220-e0bc9c78ff5d7358e1872021-09-23Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - (3S,13Z)-3-Hydroxyicosenoyl-CoA 40V, Negative-QTOFsplash10-056u-9202401500-6ec99c5ad83ea7deae262021-09-23Wishart LabView Spectrum
Biological Properties
Cellular LocationsNot Available
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider IDNot Available
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNot Available
METLIN IDNot Available
PubChem CompoundNot Available
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available