Hmp_logo

Human Metabolome Database Version 3.5

HMDB has recently undergone some major changes, if you are experiencing problems please click here to provide us with feedback.

Browsing metabolites

Filter metabolites by status:

Filter by biofluid:

Filter metabolites by origin:

Select Fields to Export from Metabolite

Select Fields to Export from Taxonomy

Select Fields to Export from Ontology

Select Fields to Export from Experimental Property Set

Select Fields to Export from Proteins

Hint Click on a column header to sort by that column. Click again to reverse the order.

HMDB IDDouble
CAS Number
NameDouble Structure FormulaDouble
Average MassDouble
Mono MassDouble
Biofluid Location
HMDB03345
492-62-6
Alpha-D-Glucose Thumb C6H12O6
180.1559
180.063388116
HMDB03349
5988-19-2
L-Dihydroorotic acid Thumb C5H6N2O4
158.1121
158.03275669
HMDB03351
5750-57-2
GDP-glucose Thumb C16H25N5O16P2
605.3411
605.077152801
HMDB03352
2216-51-5
Menthol Thumb C10H20O
156.2652
156.151415262
  • Blood
  • Urine
HMDB03355
660-88-8
5-Aminopentanoic acid Thumb C5H11NO2
117.1463
117.078978601
  • Urine
  • Blood
HMDB03357
N-Acetylornithine Thumb C7H14N2O3
174.1977
174.100442324
  • Blood
  • Urine
HMDB03361
25247-63-6
Pyrimidine Thumb C4H4N2
80.088
80.037448138
HMDB03362
1398-61-4
Chitin Thumb C28H49N3O16
683.6992
683.311282535
HMDB03363
9046-40-6
Pectic acid Thumb C6H10O7
194.1394
194.042652674
HMDB03364
106-51-4
Quinone Thumb C6H4O2
108.0948
108.021129372
  • Urine
HMDB03366
123-38-6
Propanal Thumb C3H6O
58.0791
58.041864814
  • Cerebrospinal Fluid (CSF)
HMDB03369
2906-23-2
CDP-glucose Thumb C15H25N3O16P2
565.317
565.071004791
HMDB03371
2042-27-5
L-Ribulose Thumb C5H10O5
150.1299
150.05282343
HMDB03374
348-66-3
D-Ornithine Thumb C5H12N2O2
132.161
132.089877638
  • Blood
HMDB03375
5989-54-8
D-Limonene Thumb C10H16
136.234
136.125200512
  • Blood
  • Urine
HMDB03377
6008-93-1
Itaconyl-CoA Thumb C26H40N7O19P3S
879.618
879.131252359
HMDB03378
10102-43-9
Nitric oxide Thumb NO
30.0061
29.997988627
  • Blood
  • Cerebrospinal Fluid (CSF)
HMDB03379
14127-68-5
Triphosphate Thumb O10P3
252.9153
252.870430756
  • Cerebrospinal Fluid (CSF)
HMDB03381
24587-49-3
4-Hydroxycrotonic acid Thumb C4H6O3
102.0886
102.031694058
HMDB03391
2-Phospho-D-glyceric acid Thumb C3H7O7P
186.0572
185.99293909
HMDB03402
9000-69-5
Pectin Thumb C6H10O7
194.1394
194.042652674
  • Urine
HMDB03403
9005-82-7
Amylose Thumb Not Available
Not Available
HMDB03404
9012-76-4
Chitosan Thumb C56H103N9O39
1526.4539
1525.635314599
HMDB03405
923-27-3
D-Lysine Thumb C6H14N2O2
146.1876
146.105527702
HMDB03406
312-84-5
D-Serine Thumb C3H7NO3
105.0926
105.042593095
  • Cerebrospinal Fluid (CSF)
  • Blood
  • Urine