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Identification
HMDB Protein ID HMDBP07512
Secondary Accession Numbers
  • 13220
Name Cadherin-20
Synonyms Not Available
Gene Name CDH20
Protein Type Unknown
Biological Properties
General Function Involved in calcium ion binding
Specific Function Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types
Pathways Not Available
Reactions Not Available
GO Classification
Component
membrane
cell part
plasma membrane
Function
ion binding
cation binding
metal ion binding
binding
calcium ion binding
Process
cell adhesion
cellular process
cell-cell adhesion
homophilic cell adhesion
Cellular Location
  1. Cell membrane
  2. Single-pass type I membrane protein
Gene Properties
Chromosome Location Chromosome:1
Locus 18q21.33
SNPs CDH20
Gene Sequence
>2406 bp
ATGTGGACTTCTGGTAGAATGAGCAATGCAAAGAACTGGCTTGGACTTGGCATGTCCTTG
TACTTCTGGGGGCTGATGGACCTTACGACCACCGTTCTCTCGGACACCCCAACACCACAA
GGTGAATTAGAAGCACTCCTGTCAGACAAGCCACAGTCACATCAGCGGACCAAGAGGAGC
TGGGTTTGGAACCAGTTTTTCGTTCTGGAAGAGTACACTGGGACCGACCCTTTGTATGTC
GGCAAGCTTCATTCAGATATGGACAGGGGAGACGGATCCATCAAATACATCCTCTCGGGA
GAAGGTGCTGGCATCGTGTTTACCATCGACGACACCACTGGAGACATCCACGCCATTCAG
AGGCTCGACCGAGAGGAAAGAGCCCAGTATACTCTAAGGGCTCAAGCCCTAGACAGGCGG
ACGGGCAGGCCAATGGAGCCCGAGTCAGAGTTCATCATCAAAATTCAAGACATCAATGAC
AATGAGCCCAAGTTCCTGGACGGACCTTATGTGGCCACTGTGCCAGAAATGTCCCCTGTG
GGTACCTCCGTCATCCAAGTGACAGCCACAGATGCAGATGACCCGACCTACGGCAACAGT
GCCAGGGTGGTGTACAGCATTCTTCAGGGCCAGCCATATTTTTCTGTGGACTCTAAAACA
GGTGTAATTAGGACAGCGCTCATGAACATGGACAGAGAAGCCAAAGAATACTACGAAGTG
ATTATCCAAGCCAAGGACATGGGAGGGCAGCTTGGAGGATTAGCTGGGACCACAACAGTC
AACATCACCCTCTCAGATGTCAATGATAACCCACCCCGCTTTCCCCAGAAACATTACCAG
ATGAGTGTGTTGGAATCAGCTCCAATTAGCTCCACTGTCGGGAGAGTGTTTGCCAAGGAC
TTGGATGAAGGCATCAATGCAGAGATGAAATATACTATTGTGGATGGAGATGGTGCAGAT
GCCTTTGACATTAGCACAGATCCCAATTTCCAAGTTGGTATCATAACTGTGAAGAAGCCC
CTGAGTTTTGAAAGCAAGAAAAGCTACACCTTAAAGGTGGAGGGAGCCAATCCTCACCTA
GAGATGCGTTTTCTGAACTTGGGCCCATTTCAGGACACAACAACAGTGCACATCAGTGTG
GAAGACGTGGACGAGCCCCCTGTGTTTGAACCTGGCTTTTACTTTGTGGAGGTGCCTGAG
GATGTGGCGATTGGAACAACCATACAGATCATTTCTGCCAAGGACCCAGATGTGACCAAC
AACTCAATCAGATACTCCATTGATAGAAGCAGTGACCCTGGAAGATTTTTCTATGTTGAC
ATTACAACAGGTGCCCTAATGACAGCAAGACCCCTAGACCGGGAAGAATTTTCTTGGCAT
AATATCACTGTCCTTGCTATGGAAATGAACAATCCCTCCCAGGTTGGAAGTGTTCCTGTC
ACAATCAAAGTCTTAGATGTGAATGACAATGCTCCAGAGTTCCCCAGATTCTATGAAGCT
TTTGTCTGTGAGAACGCCAAGGCAGGACAGCTGATCCAGACAGTGAGTGCGGTGGACCAA
GATGACCCACGCAATGGTCAGCATTTCTACTACAGCTTGGCTCCTGAGGCTGCTAACAAC
CCCAACTTTACCATAAGGGACAACCAAGATAACACAGCACGGATTCTAACCAGGAGGTCT
GGTTTCCGGCAGCAGGAGCAGAGTGTCTTTCACCTGCCTATCCTGATAGCAGATAGCGGG
CAGCCCGTGCTGAGCAGCACAGGCACACTGACCATCCAAGTGTGCAGCTGTGATGACGAC
GGCCACGTCATGTCCTGCAGCCCAGAGGCCTACATGCTCCCAGTCAGTTTGAGCCGGGGC
CCCCTCATTGCCATCCTCGCCTGCATCTTTGTCCTCCTAGTGCTGGTGTTGCTCATTTTG
TCCATGAGGCGGCACCGGAAACAACCATACATCATCGACGACGAGGAAAACATCCACGAG
AACATCGTCCGCTACGACGACGAGGGCGGCGGCGAGGAGGACACCGAGGCCTTCGACATC
GCGGCCATGTGGAACCCCCGGGAGGCGCAGGCGGGGGCCGGCCCCAAGACGCGGCAGGAC
ATGCTGCCCGAGATCGAGAGCCTCTTCCGCTACGTGCCTCAGACGTGCGCAGTGAACAGC
ACTGTCCACAGCTACGTGCTGGCCAAGCTCTACGAGGCCGACATGGACCTGTGGACACCG
CCCTTCGACTCCCTCCAGACGTATATGTTCGAGGGGGACGGCCCTGTGGCGGGGTCGCTG
AGCTCCCTGCAGTCGGCCACGTCGGACTCGGAACAGAGCTTCGACTTCCTGACGGACTGG
GGGCCCCGCTTCCGGAAGCTGGCCGAGCTCTACGGGGCGTCGGAGGGACCCGCGCCGCTG
TGGTGA
Protein Properties
Number of Residues 801
Molecular Weight 88992.0
Theoretical pI 4.3
Pfam Domain Function
Signals
  • 1-34
Transmembrane Regions
  • 620-640
Protein Sequence
>Cadherin-20
MWTSGRMSNAKNWLGLGMSLYFWGLMDLTTTVLSDTPTPQGELEALLSDKPQSHQRTKRS
WVWNQFFVLEEYTGTDPLYVGKLHSDMDRGDGSIKYILSGEGAGIVFTIDDTTGDIHAIQ
RLDREERAQYTLRAQALDRRTGRPMEPESEFIIKIQDINDNEPKFLDGPYVATVPEMSPV
GTSVIQVTATDADDPTYGNSARVVYSILQGQPYFSVDSKTGVIRTALMNMDREAKEYYEV
IIQAKDMGGQLGGLAGTTTVNITLSDVNDNPPRFPQKHYQMSVLESAPISSTVGRVFAKD
LDEGINAEMKYTIVDGDGADAFDISTDPNFQVGIITVKKPLSFESKKSYTLKVEGANPHL
EMRFLNLGPFQDTTTVHISVEDVDEPPVFEPGFYFVEVPEDVAIGTTIQIISAKDPDVTN
NSIRYSIDRSSDPGRFFYVDITTGALMTARPLDREEFSWHNITVLAMEMNNPSQVGSVPV
TIKVLDVNDNAPEFPRFYEAFVCENAKAGQLIQTVSAVDQDDPRNGQHFYYSLAPEAANN
PNFTIRDNQDNTARILTRRSGFRQQEQSVFHLPILIADSGQPVLSSTGTLTIQVCSCDDD
GHVMSCSPEAYMLPVSLSRGALIAILACIFVLLVLVLLILSMRRHRKQPYIIDDEENIHE
NIVRYDDEGGGEEDTEAFDIAAMWNPREAQAGAAPKTRQDMLPEIESLSRYVPQTCAVNS
TVHSYVLAKLYEADMDLWAPPFDSLQTYMFEGDGSVAGSLSSLQSATSDSEQSFDFLTDW
GPRFRKLAELYGASEGPAPLW
GenBank ID Protein 10834607
UniProtKB/Swiss-Prot ID Q9HBT6
UniProtKB/Swiss-Prot Entry Name CAD20_HUMAN
PDB IDs Not Available
GenBank Gene ID AF217289
GeneCard ID CDH20
GenAtlas ID CDH20
HGNC ID HGNC:1760
References
General References
  1. Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res. 2004 Oct;14(10B):2121-7. [PubMed:15489334 ]
  2. Sjoblom T, Jones S, Wood LD, Parsons DW, Lin J, Barber TD, Mandelker D, Leary RJ, Ptak J, Silliman N, Szabo S, Buckhaults P, Farrell C, Meeh P, Markowitz SD, Willis J, Dawson D, Willson JK, Gazdar AF, Hartigan J, Wu L, Liu C, Parmigiani G, Park BH, Bachman KE, Papadopoulos N, Vogelstein B, Kinzler KW, Velculescu VE: The consensus coding sequences of human breast and colorectal cancers. Science. 2006 Oct 13;314(5797):268-74. Epub 2006 Sep 7. [PubMed:16959974 ]
  3. Kools P, Van Imschoot G, van Roy F: Characterization of three novel human cadherin genes (CDH7, CDH19, and CDH20) clustered on chromosome 18q22-q23 and with high homology to chicken cadherin-7. Genomics. 2000 Sep 15;68(3):283-95. [PubMed:10995570 ]