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Identification
HMDB Protein ID HMDBP07887
Secondary Accession Numbers
  • 13598
Name Protocadherin alpha-10
Synonyms
  1. PCDH-alpha-10
Gene Name PCDHA10
Protein Type Unknown
Biological Properties
General Function Involved in calcium ion binding
Specific Function Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain
Pathways Not Available
Reactions Not Available
GO Classification
Component
membrane
cell part
plasma membrane
Function
ion binding
cation binding
metal ion binding
binding
calcium ion binding
Process
cell adhesion
cellular process
cell-cell adhesion
homophilic cell adhesion
Cellular Location
  1. Isoform 2:Secreted (Potential)
Gene Properties
Chromosome Location Chromosome:5
Locus 5q31
SNPs PCDHA10
Gene Sequence
>2847 bp
ATGGTTTCCAGATGTAGCTGCCTGGGGGTCCAGTGTCTGCTGCTCTCGCTTCTTCTCCTC
GCAGCCTGGGAGGTGGGGAGCGGCCAGCTCCACTACTCAGTCTACGAGGAGGCCAGACAC
GGCACCTTCGTGGGCCGCATCGCGCAGGACCTGGGGCTGGAGCTGGCGGAGCTGGTGCAG
CGCCTGTTCCGGGTGGCGTCCAAAAGACACGGGGACCTTCTGGAGGTAAATCTGCAGAAT
GGCATTTTGTTTGTGAATTCTCGGATTGACCGCGAGGAGCTGTGCGGGCGGAGCGTGGAG
TGCAGCATCCACCTGGAGGTGATCGTGGACAGGCCGCTGCAGGTTTTCCATGTGGACGTG
GAAGTGAAGGACATTAACGACAACCCGCCCAGGTTCTCCGTAACAGAACAAAAGCTCTCA
ATACCTGAATCCAGACTGCTTGACTCTCGATTTCCACTAGAAGGCGCATCTGATGCGGAT
GTTGGAGAGAACGCATTGCTTACTTACAAACTCAGTCCAAATGAGTATTTTGTTCTTGAT
ATTATAAACAAAAAAGACAAAGACAAATTCCCAGTGCTTGTTCTGCGGAAGCTGCTGGAT
CGTGAAGAAAATCCTCAGCTAAAGTTGTTGTTGACAGCAACTGATGGAGGCAAACCTGAA
TTTACCGGATCTGTTTCTCTGCTGATCCTGGTGTTAGATGCCAATGATAACGCCCCTATC
TTTGACAGACCGGTTTATGAAGTTAAGATGTATGAAAATCAAGTGAACCAAACATTAGTA
ATACGGCTCAACGCTTCTGATTCGGATGAAGGAATAAACAAGGAAATGATGTATTCATTT
AGCTCTTTGGTCCCACCCACGATAAGAAGGAAATTTTGGATAAACGAAAGGACGGGAGAA
ATAAAAGTAAATGATGCTATTGACTTTGAGGACAGTAACACTTATGAAATTCATGTAGAT
GTTACAGATAAGGGAAACCCACCTATGGTTGGTCACTGCACGGTCCTAGTGGAACTACTG
GATGAAAATGATAATTCACCTGAGGTGATTGTCACTTCTCTGTCTCTCCCAGTGAAAGAA
GATGCTCAAGTGGGCACCGTCATTGCCCTAATCAGCGTTTCTGACCATGATTCAGGAGCC
AACGGACAGGTCACCTGCTCTCTGACGCCTCACGTTCCGTTCAAGCTGGTGTCCACCTAC
AAGAATTACTACTCATTGGTGCTGGACAGCGCTCTGGACCGCGAGAGGGTGTCGGCCTAT
GAGCTGGTGGTGACCGCGCGGGACGGGGGCTCGCCTCCGCTGTGGGCCACGGCCAGCGTG
TCTGTGGAGGTGGCCGACGTGAACGACAACGCGCCTGCGTTCGCGCAGTCCGAGTACACG
GTGTTCGTGAAGGAGAACAACCCGCCAGGCTGCCACATCTTCACGGTGTCTGCGTGGGAC
GCGGACGCGCAGGAGAACGCCCTGGTGTCCTACTCTCTGGTGGAGCGGCGGTTGGGCGAG
CGCTCGCTGTCGAGCTACGTGTCGGTGCACGCGGAGAGCGGCAAGGTGTACGCGCTGCAG
CCGCTGGACCACGAGGAGCTGGAGCTGCTACAGTTCCAGGTGAGCGCGCGCGATGGGGGC
GTGCCGCCTCTGGGCAGCAACTTGACGCTGCAGGTGTTCGTGCTGGACGAGAACGACAAC
GCTCCCGCGCTGCTGGCGTCTCCCGCTGGCAGCGCGGGCGGTGCAGTCAGTGAGCTGGTG
CTGCGGTCGGTGGTTGCGGGTCACGTGGTGGCTAAGGTGCGCGCAGTGGACGCTGACTCT
GGATACAACGCGTGGCTGTCGTATGAATTGCAGTCGGCGGCGGTTGGTGCACGCATCCCG
TTTCGCGTGGGGCTGTACACGGGCGAGATCAGTACGACGCGCGCTCTGGATGAGACTGAC
TCGCCACGCCAGCGCCTACTGGTGCTGGTGAAGGACCATGGCGAGCCGTCGCTGACGGCC
ACGGCCACTGTGCTTGTGTCGCTTGTGGAGGGCAGCCAGGCACCCAAGGCCTCGTCGCGG
GCTTCAGTGGGCGTGGCGCCCGAGGTGGCCCTGGTGGATGTCAACGTGTACCTGATCATC
GCCATCTGCGCGGTGTCCAGCTTGCTGGTGCTCACGCTGCTGCTGTACACTGCACTGAGG
TGCTCGGCGGCGCCCACCGAGGGCGCATGTGGGCCGGTGAAGCCCACGCTGGTGTGCTCT
AGCGCGGTGGGGAGCTGGTCTTACTCGCAGCAGAGGCGGCAGAGGGTGTGTTCTGGGGAG
GGCCTGCCCAAGGCGGACCTCATGGCCTTCAGCCCCAGCCTTCCACCATGCCCAATGGTA
GATGTGGACGGGGAAGATCAGTCTATTGGAGGGGACCACTCTAGGAAGCCACGACAGCCC
AACCCTGACTGGCGTTACTCTGCCTCCCTGAGAGCAGGCATGCACAGCTCTGTGCACCTA
GAGGAGGCTGGCATTCTACGGGCTGGTCCAGGAGGGCCTGATCAGCAGTGGCCAACAGTA
TCCAGTGCAACACCAGAACCAGAGGCAGGAGAAGTGTCCCCTCCAGTCGGTGCGGGTGTC
AACAGCAACAGCTGGACCTTTAAATACGGACCAGGCAACCCCAAACAATCCGGTCCCGGT
GAGTTGCCCGACAAATTCATTATCCCAGGATCTCCTGCAATCATCTCCATCCGGCAGGAG
CCTACTAACAGCCAAATTGACAAAAGTGACTTCATAACCTTCGGCAAAAAGGAGGAGACC
AAGAAAAAGAAGAAAAAGAAGAAGGGTAACAAGACCCAGGAGAAAAAAGAGAAAGGGAAC
AGCACGACTGACAACAGTGACCAGTGA
Protein Properties
Number of Residues 948
Molecular Weight 102874.2
Theoretical pI 4.8
Pfam Domain Function
Signals
  • 1-28
Transmembrane Regions
  • 696-716
Protein Sequence
>Protocadherin alpha-10
MVSRCSCLGVQCLLLSLLLLAAWEVGSGQLHYSVYEEARHGTFVGRIAQDLGLELAELVQ
RLFRVASKRHGDLLEVNLQNGILFVNSRIDREELCGRSVECSIHLEVIVDRPLQVFHVDV
EVKDINDNPPRFSVTEQKLSIPESRLLDSRFPLEGASDADVGENALLTYKLSPNEYFVLD
IINKKDKDKFPVLVLRKLLDREENPQLKLLLTATDGGKPEFTGSVSLLILVLDANDNAPI
FDRPVYEVKMYENQVNQTLVIRLNASDSDEGINKEMMYSFSSLVPPTIRRKFWINERTGE
IKVNDAIDFEDSNTYEIHVDVTDKGNPPMVGHCTVLVELLDENDNSPEVIVTSLSLPVKE
DAQVGTVIALISVSDHDSGANGQVTCSLTPHVPFKLVSTYKNYYSLVLDSALDRERVSAY
ELVVTARDGGSPPLWATASVSVEVADVNDNAPAFAQSEYTVFVKENNPPGCHIFTVSAWD
ADAQENALVSYSLVERRLGERSLSSYVSVHAESGKVYALQPLDHEELELLQFQVSARDGG
VPPLGSNLTLQVFVLDENDNAPALLASPAGSAGGAVSELVLRSVVAGHVVAKVRAVDADS
GYNAWLSYELQSAAVGARIPFRVGLYTGEISTTRALDETDSPRQRLLVLVKDHGEPSLTA
TATVLVSLVEGSQAPKASSRASVGVAPEVALVDVNVYLIIAICAVSSLLVLTLLLYTALR
CSAAPTEGACGPVKPTLVCSSAVGSWSYSQQRRQRVCSGEGLPKADLMAFSPSLPPCPMV
DVDGEDQSIGGDHSRKPRQPNPDWRYSASLRAGMHSSVHLEEAGILRAGPGGPDQQWPTV
SSATPEPEAGEVSPPVGAGVNSNSWTFKYGPGNPKQSGPGELPDKFIIPGSPAIISIRQE
PTNSQIDKSDFITFGKKEETKKKKKKKKGNKTQEKKEKGNSTTDNSDQ
GenBank ID Protein 9256574
UniProtKB/Swiss-Prot ID Q9Y5I2
UniProtKB/Swiss-Prot Entry Name PCDAA_HUMAN
PDB IDs Not Available
GenBank Gene ID NM_018901.2
GeneCard ID PCDHA10
GenAtlas ID PCDHA10
HGNC ID HGNC:8664
References
General References
  1. Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res. 2004 Oct;14(10B):2121-7. [PubMed:15489334 ]
  2. Schmutz J, Martin J, Terry A, Couronne O, Grimwood J, Lowry S, Gordon LA, Scott D, Xie G, Huang W, Hellsten U, Tran-Gyamfi M, She X, Prabhakar S, Aerts A, Altherr M, Bajorek E, Black S, Branscomb E, Caoile C, Challacombe JF, Chan YM, Denys M, Detter JC, Escobar J, Flowers D, Fotopulos D, Glavina T, Gomez M, Gonzales E, Goodstein D, Grigoriev I, Groza M, Hammon N, Hawkins T, Haydu L, Israni S, Jett J, Kadner K, Kimball H, Kobayashi A, Lopez F, Lou Y, Martinez D, Medina C, Morgan J, Nandkeshwar R, Noonan JP, Pitluck S, Pollard M, Predki P, Priest J, Ramirez L, Retterer J, Rodriguez A, Rogers S, Salamov A, Salazar A, Thayer N, Tice H, Tsai M, Ustaszewska A, Vo N, Wheeler J, Wu K, Yang J, Dickson M, Cheng JF, Eichler EE, Olsen A, Pennacchio LA, Rokhsar DS, Richardson P, Lucas SM, Myers RM, Rubin EM: The DNA sequence and comparative analysis of human chromosome 5. Nature. 2004 Sep 16;431(7006):268-74. [PubMed:15372022 ]
  3. Wu Q, Maniatis T: A striking organization of a large family of human neural cadherin-like cell adhesion genes. Cell. 1999 Jun 11;97(6):779-90. [PubMed:10380929 ]