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Showing Protein Protocadherin gamma-B1 (HMDBP07922)
Identification | ||||||||||||||||
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HMDB Protein ID | HMDBP07922 | |||||||||||||||
Secondary Accession Numbers |
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Name | Protocadherin gamma-B1 | |||||||||||||||
Synonyms |
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Gene Name | PCDHGB1 | |||||||||||||||
Protein Type | Unknown | |||||||||||||||
Biological Properties | ||||||||||||||||
General Function | Involved in calcium ion binding | |||||||||||||||
Specific Function | Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain | |||||||||||||||
Pathways | Not Available | |||||||||||||||
Reactions | Not Available | |||||||||||||||
GO Classification |
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Cellular Location |
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Gene Properties | ||||||||||||||||
Chromosome Location | Chromosome:5 | |||||||||||||||
Locus | 5q31 | |||||||||||||||
SNPs | PCDHGB1 | |||||||||||||||
Gene Sequence |
>2784 bp ATGCAGAGAGCCAGAGAAGCCGAAATGATGAAAAGTCAGGTACTGTTTCCCTTCCTGCTG TCTTTGTTCTGCGGGGCCATCTCCCAGCAGATCCGATACACGATTCCAGAGGAGCTAGCC AACGGCTCACGGGTGGGGAAACTTGCCAAGGATCTGGGGCTCAGTGTCCGGGAGTTGCCA ACTCGAAAACTGCGGGTTAGTGCAGAGGATTATTTCAACGTTAGTTTGGAGAGCGGGGAT TTGTTAGTGAACGGTAGGATAGATCGAGAGAAGATTTGCGGAAGGAAACTTGAGTGTGCA CTAGAATTCGAAACGGTCGCTGAAAACCCAATGAATGTTTTCCACGTGGTTGTTGTAATC CAAGATATTAATGACAATGCACCACGTTTCGTTGCAAAAGGCATTGACTTAGAAATTTGT GAGTCAGCCTTACCCGGGGTAAAATTCTCTCTGGATTCTGCTCAAGATGCAGATGTGGAA GGCAATTCACTGAAGTTATACACCATCAACCCCAATCAATACTTCTCTCTGTCAACGAAG GAAAGTCCTGATGGAAGTAAATATCCGGTATTACTGCTGGAAAAACCTCTAGACAGGGAA CATCAGAGCTCTCATCGCTTAATCCTGACTGCCATGGATGGCGGGGACCCGCCTCTAAGC GGCACCACCCATATCTGGATCCGAGTTACGGATGCCAATGATAATGCTCCCGTGTTTAGC CAGGAGGTATACAGGGTTAGCCTCCAAGAAAACGTACCGTGGGGAACCTCCGTGCTGCGG GTGATGGCCACAGACCAGGATGAGGGCATTAATGCAGAGATCACCTATGCCTTCCTCAAT TCCCCAATAAGTACCAGCCTCTTCAATCTCAATCCAAATACTGGCGACATCACAACCAAT GGCACATTGGATTTTGAAGAGACAAGTAGATATGTGTTGAGTGTGGAAGCTAAGGATGGA GGAGTACACACAGCTCACTGTAATGTTCAAATAGAAATTGTTGACGAGAATGACAATGCC CCAGAGGTGACATTCATGTCCTTCTCTAACCAGATTCCAGAGGATTCAGACCTTGGAACT GTAATAGCCCTCATAAAAGTGCGAGACAAGGATTCTGGGCAAAATGGCATGGTGACATGC TATACTCAGGAAGAAGTTCCTTTCAAATTAGAATCCACCTCGAAGAATTATTACAAGCTG GTGATTGCTGGAGCCCTAAACCGGGAGCAGACAGCAGACTACAACGTCACAATCATAGCC ACCGACAAGGGCAAACCAGCCCTTTCCTCCAGGACAAGCATCACCCTGCACATCTCCGAC ATCAACGACAATGCACCTGTTTTCCATCAGGCCTCCTATGTGGTCCACGTGTCTGAGAAC AACCCACCTGGCGCCTCCATTGCACAAGTAAGCGCCTCCGACCCGGATTTGGGACCCAAC GGCAGAGTCTCCTACTCTATTCTGGCCAGTGACCTGGAGCCGCGGGAGCTGTTGTCCTAC GTGTCCGTGAGCCCGCAGAGCGGGGTGGTGTTCGCGCAGCGCGCCTTCGACCACGAGCAG CTGCGCGCCTTCGAGCTCACACTGCAGGCCAGGGACCAGGGCTCCCCCGCGCTCAGCGCC AACGTGAGCCTGCGCGTGTTGGTGGGCGACCTCAATGACAATGCGCCACGGGTGCTGTAC CCCGCGCTGGGGCCTGATGGCTCCGCCCTCTTCGATATGGTGCCACGCGCCGCAGAGCCC GGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGCAGACTCAGGACACAACGCTTGGCTG TCCTACCACGTGCTGCAGGCCAGCGAGCCCGGGCTCTTCAGCCTGGGGTTGCGCACGGGT GAGGTGCGCACAGCGCGTGCCTTGGGCGACAGGGACGCGGCCCGCCAGCGCCTGCTGGTC GCTGTGCGTGATGGAGGACAGCCGCCACTCTCCGCCACCGCCACGCTGCACCTAATCTTC GCGGATAGCCTGCAAGAGGTATTGCCAGACCTCAGCGACCGCCCTGAGCCCTCTGACCCC CAGACGGAACTGCAGTTTTACCTGGTTGTGGCCTTGGCCTTGATCTCAGTGCTCTTTCTC CTCGCGGTGATTCTAGCGATCGCCCTGCGCCTGCGACGTTCCTCCAGCCTCGACACTGAG GGCTGCTTTCAAACCGGTCTCTGCTCCAAGTCTGGGCCCGGGGTTCCTCCCAACCACAGC GAGGGGACTTTGCCCTATTCCTACAATCTATGTATTGCCTCTCATTCTGCAAAGACAGAG TTTAATTCTCTCAACCTGACACCGGAAATGGCTCCCCCTCAGGATCTGCTGTGTGATGAT CCTTCTATGGTTGTATGTGCCAGTAATGAAGATCACAAAATCGCTTATGACCCTTCTTTG TCTTCGCACCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGACCCGGC ACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTTGACACA GAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGCTCCACC CTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTCACCCTG CAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACACTGACC AACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAGAAGAAG TCGGGCAAGAAGGAGAAGAAGTAA |
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Protein Properties | ||||||||||||||||
Number of Residues | 927 | |||||||||||||||
Molecular Weight | 100358.5 | |||||||||||||||
Theoretical pI | 4.69 | |||||||||||||||
Pfam Domain Function | ||||||||||||||||
Signals |
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Transmembrane Regions |
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Protein Sequence |
>Protocadherin gamma-B1 MQRAREAEMMKSQVLFPFLLSLFCGAISQQIRYTIPEELANGSRVGKLAKDLGLSVRELP TRKLRVSAEDYFNVSLESGDLLVNGRIDREKICGRKLECALEFETVAENPMNVFHVVVVI QDINDNAPRFVAKGIDLEICESALPGVKFSLDSAQDADVEGNSLKLYTINPNQYFSLSTK ESPDGSKYPVLLLEKPLDREHQSSHRLILTAMDGGDPPLSGTTHIWIRVTDANDNAPVFS QEVYRVSLQENVPWGTSVLRVMATDQDEGINAEITYAFLNSPISTSLFNLNPNTGDITTN GTLDFEETSRYVLSVEAKDGGVHTAHCNVQIEIVDENDNAPEVTFMSFSNQIPEDSDLGT VIALIKVRDKDSGQNGMVTCYTQEEVPFKLESTSKNYYKLVIAGALNREQTADYNVTIIA TDKGKPALSSRTSITLHISDINDNAPVFHQASYVVHVSENNPPGASIAQVSASDPDLGPN GRVSYSILASDLEPRELLSYVSVSPQSGVVFAQRAFDHEQLRAFELTLQARDQGSPALSA NVSLRVLVGDLNDNAPRVLYPALGPDGSALFDMVPRAAEPGYLVTKVVAVDADSGHNAWL SYHVLQASEPGLFSLGLRTGEVRTARALGDRDAARQRLLVAVRDGGQPPLSATATLHLIF ADSLQEVLPDLSDRPEPSDPQTELQFYLVVALALISVLFLLAVILAIALRLRRSSSLDTE GCFQTGLCSKSGPGVPPNHSEGTLPYSYNLCIASHSAKTEFNSLNLTPEMAPPQDLLCDD PSMVVCASNEDHKIAYDPSLSSHQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQFDT EMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNATLT NAAGKRDGKAPAGGNGNKKKSGKKEKK |
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External Links | ||||||||||||||||
GenBank ID Protein | 5456957 | |||||||||||||||
UniProtKB/Swiss-Prot ID | Q9Y5G3 | |||||||||||||||
UniProtKB/Swiss-Prot Entry Name | PCDGD_HUMAN | |||||||||||||||
PDB IDs | Not Available | |||||||||||||||
GenBank Gene ID | AF152330 | |||||||||||||||
GeneCard ID | PCDHGB1 | |||||||||||||||
GenAtlas ID | PCDHGB1 | |||||||||||||||
HGNC ID | HGNC:8708 | |||||||||||||||
References | ||||||||||||||||
General References |
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