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Identification
HMDB Protein ID HMDBP07924
Secondary Accession Numbers
  • 13635
Name Protocadherin gamma-B3
Synonyms
  1. PCDH-gamma-B3
Gene Name PCDHGB3
Protein Type Unknown
Biological Properties
General Function Involved in calcium ion binding
Specific Function Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain
Pathways Not Available
Reactions Not Available
GO Classification
Component
membrane
cell part
plasma membrane
Function
ion binding
cation binding
metal ion binding
binding
calcium ion binding
Process
cell adhesion
cellular process
cell-cell adhesion
homophilic cell adhesion
Cellular Location
  1. Cell membrane
  2. Single-pass type I membrane protein
Gene Properties
Chromosome Location Chromosome:5
Locus 5q31
SNPs PCDHGB3
Gene Sequence
>2790 bp
ATGGGAAATAGCTCCGGATGGAGGGGCCCAGCAGGGCAGAGGCGAATGCTATTTCTCTTC
CTGCTCTCTTTGTTAGACCAGGTTCTCTCCGAACCGATCCGCTACGCTATTCCCGAGGAG
CTGGACAGGGGCTCGCTGGTAGGGAACCTCGCCAAGGACCTGGGGTTTGGCGTGGGGGAT
TTACCTACTAGGAACCTGCGGGTTATTGCAGAGAAGAAATTCTTTACCGTGAGCCCCGAA
AATGGGAACTTACTTGTGAGCGACCGTATAGACCGAGAGGAGATTTGTGGCAAGAAGTCG
ACGTGTGTTCTGGAATTTGAAATGGTTGCTGAAAAGCCTTTAAACTTTTTTCATGTAACT
GTGCTGATCCAGGATATTAACGACAACCCACCGACCTTTAGCCAAAATATCACTGAGCTG
GAAATCAGCGAACTGGCTCTCACTGGAGCCACATTTGCCCTGGAATCTGCGCAAGATCCT
GATGTAGGTGTCAATTCGCTGCAGCAGTACTACCTCAGCCCTGATCCGCACTTCTCTTTG
ATTCAGAAGGAGAACCTGGATGGCAGTAGGTACCCAGAGCTAGTACTGAAAGCACCCCTG
GACAGGGAAGAGCAGCCACATCACCACCTGGTCCTCACAGCTGTGGATGGGGGCGAGCCC
TCCAGAAGCTGTACCACCCAGATCAGGGTAATTGTCGCAGATGCAAATGATAACCCCCCA
GTATTTACTCAGGACATGTACAGGGTCAATGTTGCAGAGAACCTGCCCGCTGGCTCCTCC
GTATTAAAAGTGATGGCCATTGACATGGATGAGGGCATCAATGCCGAAATCATCTATGCC
TTCATCAATATTGGCAAGGAAGTGAGACAACTGTTCAAGCTGGACAGTAAAACGGGGGAA
CTCACCACTATTGGAGAACTGGACTTTGAAGAGAGAGATAGCTACACAATTGGGGTGGAA
GCAAAGGATGGTGGACATCACACTGCATATTGTAAAGTACAGATAGATATTTCAGATGAA
AATGACAATGCCCCGGAGATAACCCTGGCTTCTGAATCCCAACATATACAAGAAGATGCT
GAGCTGGGGACTGCCGTTGCCCTGATCAAAACACATGATCTAGATTCTGGATTTAATGGA
GAAATCCTATGCCAACTAAAAGGAAACTTCCCCTTTAAAATCGTTCAAGATACCAAAAAC
ACATACAGGTTGGTGACAGATGGAGCCCTGGACCGGGAGCAGATCCCAGAATACAATGTG
ACGATCACAGCTACCGACAAAGGCAATCCACCGCTCTCCTCCAGCAAGACCATCACTCTG
CACATCCTTGATGTCAACGACAACGTTCCCGTTTTCCACCAGGCCTCCTACACCGTGCAT
GTAGCTGAGAACAATCCGCCTGGAGCCTCCATTGCGCATGTCAGAGCCTCGGATCCCGAC
TTGGGACCTAATGGCCTTGTCTCCTACTACATCGTGGCCAGTGACCTGGAGCCGCGGGAG
CTGTCGTCCTACGTGTCCGTGAGCGCGCGGAGCGGGGTGGTGTTCGCGCAGCGAGCCTTC
GACCACGAGCAGCTGCGTGCCTTCGAGCTCACTCTGCAGGCCCGCGACCAGGGCTCGCCT
ACGCTCAGCGCCAACGTGAGCCTGCGCGTGTTGGTGGACGACCGCAACGACAATGCACCG
CTGGTGCTGTACCCAGCTCTGGGGCCCGAAGGCTCTGCGCTCTTCGATATGGTGCCGCGC
TCTGCAGAGCCTGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGCAGACTCGGGATAC
AACGCCTGGCTGTCCTACCACATTGTGCAGGCCAGCGAGCCCGGGCTGTTCAGCCTGGGC
CTGCGCACGGGTGAGGTGCGCACGGCGCGTACCTTGGGCGACAGGGAGGCCGCCCGCCAG
CGCCTGCTGGTCACTGTGCGTGATGGAGGACAGCAGCCTCTTTCAGCCACCGTCATGCTG
CACCTAATCTTCGCAGATAGCTTGCAAGAGATACAACCTGACCTTAGCGACCGCCCCACT
CCCTCTGACCCTCAGGCGGAGCTACAGTTTCACCTAGTAGTGGCGTTGGCCTTGATCTCA
GTGCTCTTCCTCCTCGCGGTGATTCTGGCAATCTCCCTGCGCCTGCGATGCTCCTCCAGA
CCCGCCACTGAGGGCTACTTTCAGCCTGGTGTCTGCTTCAAGACTGTACCTGGAGTTCTC
CCCACCTACAGCGAAAGGACTTTGCCTTATTCCTACAATCCGTGTGCTGCCTCACATTCC
TCAAACACCGAGTTTAAATTTCTCAATATAAAGGCTGAAAATGCTGCACCACAAGATCTT
CTATGTGATGAAGCCTCTTGGTTTGAAAGTAATGACAATCCAGAAATGCCTTCTAATTCA
GGCAATTTGCAAAAGCAAGCCCCGCCCAACACGGACTGGCGTTTCTCTCAGGCCCAGAGA
CCCGGCACCAGCGGCTCCCAAAATGGCGATGACACCGGCACCTGGCCCAACAACCAGTTT
GACACAGAGATGCTGCAAGCCATGATCTTGGCGTCCGCCAGTGAAGCTGCTGATGGGAGC
TCCACCCTGGGAGGGGGTGCCGGCACCATGGGATTGAGCGCCCGCTACGGACCCCAGTTC
ACCCTGCAGCACGTGCCCGACTACCGCCAGAATGTCTACATCCCAGGCAGCAATGCCACA
CTGACCAACGCAGCTGGCAAGCGGGATGGCAAGGCCCCAGCAGGTGGCAATGGCAACAAG
AAGAAGTCGGGCAAGAAGGAGAAGAAGTAA
Protein Properties
Number of Residues 929
Molecular Weight 101203.4
Theoretical pI 4.62
Pfam Domain Function
Signals
  • 1-30
Transmembrane Regions
  • 692-712
Protein Sequence
>Protocadherin gamma-B3
MGNSSGWRGPAGQRRMLFLFLLSLLDQALSEPIRYAIPEELDRGSLVGNLAKDLGFGVGD
LPTRNLRVIAEKKFFTVSPENGNLLVSDRIDREEICGKKSTCVLEFEMVAEKPLNFFHVT
VLIQDINDNPPTFSQNITELEISELALTGATFALESAQDPDVGVNSLQQYYLSPDPHFSL
IQKENLDGSRYPELVLKAPLDREEQPHHHLVLTAVDGGEPSRSCTTQIRVIVADANDNPP
VFTQDMYRVNVAENLPAGSSVLKVMAIDMDEGINAEIIYAFINIGKEVRQLFKLDSKTGE
LTTIGELDFEERDSYTIGVEAKDGGHHTAYCKVQIDISDENDNAPEITLASESQHIQEDA
ELGTAVALIKTHDLDSGFNGEILCQLKGNFPFKIVQDTKNTYRLVTDGALDREQIPEYNV
TITATDKGNPPLSSSKTITLHILDVNDNVPVFHQASYTVHVAENNPPGASIAHVRASDPD
LGPNGLVSYYIVASDLEPRELSSYVSVSARSGVVFAQRAFDHEQLRAFELTLQARDQGSP
TLSANVSLRVLVDDRNDNAPLVLYPALGPEGSALFDMVPRSAEPGYLVTKVVAVDADSGY
NAWLSYHIVQASEPGLFSLGLRTGEVRTARTLGDREAARQRLLVTVRDGGQQPLSATVML
HLIFADSLQEIQPDLSDRPTPSDPQAELQFHLVVALALISVLFLLAVILAISLRLRCSSR
PATEGYFQPGVCFKTVPGVLPTYSERTLPYSYNPCAASHSSNTEFKFLNIKAENAAPQDL
LCDEASWFESNDNPEMPSNSGNLQKQAPPNTDWRFSQAQRPGTSGSQNGDDTGTWPNNQF
DTEMLQAMILASASEAADGSSTLGGGAGTMGLSARYGPQFTLQHVPDYRQNVYIPGSNAT
LTNAAGKRDGKAPAGGNGNKKKSGKKEKK
GenBank ID Protein 5456961
UniProtKB/Swiss-Prot ID Q9Y5G1
UniProtKB/Swiss-Prot Entry Name PCDGF_HUMAN
PDB IDs Not Available
GenBank Gene ID AF152332
GeneCard ID PCDHGB3
GenAtlas ID PCDHGB3
HGNC ID HGNC:8710
References
General References
  1. Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res. 2004 Oct;14(10B):2121-7. [PubMed:15489334 ]
  2. Wu Q, Maniatis T: A striking organization of a large family of human neural cadherin-like cell adhesion genes. Cell. 1999 Jun 11;97(6):779-90. [PubMed:10380929 ]