Hmdb loader
Survey
Identification
HMDB Protein ID HMDBP07932
Secondary Accession Numbers
  • 13643
Name Protocadherin-9
Synonyms Not Available
Gene Name PCDH9
Protein Type Unknown
Biological Properties
General Function Involved in calcium ion binding
Specific Function Potential calcium-dependent cell-adhesion protein
Pathways Not Available
Reactions Not Available
GO Classification
Component
membrane
cell part
plasma membrane
Function
ion binding
cation binding
metal ion binding
binding
calcium ion binding
Process
cell adhesion
cellular process
cell-cell adhesion
homophilic cell adhesion
Cellular Location
  1. Cell membrane
  2. Single-pass type I membrane protein
Gene Properties
Chromosome Location Chromosome:1
Locus 13q21.32
SNPs PCDH9
Gene Sequence
>3714 bp
ATGGACCTGAGGGATTTTTACCTGTTGGCTGCTCTGATTGCCTGTTTAAGGCTGGATTCC
GCAATAGCTCAAGAACTTATTTACACTATTAGAGAGGAATTGCCTGAAAATGTGCCCATA
GGAAACATACCAAAGGATCTGAACATTTCTCACATCAATGCTGCCACAGGGACCAGCGCC
AGCCTTGTCTACAGACTGGTTTCTAAAGCTGGGGATGCCCCTTTGGTGAAAGTTTCCAGC
AGCACTGGGGAAATTTTCACAACCTCCAACAGAATAGACAGAGAAAAACTCTGTGCTGGC
GCCTCATATGCTGAGGAGAATGAGTGTTTCTTTGAACTTGAGGTGGTGATCCTCCCCAAT
GATTTCTTCAGGCTGATCAAAATAAAAATAATTGTCAAGGATACCAATGATAATGCCCCC
ATGTTTCCATCTCCTGTCATCAATATTTCCATTCCAGAAAACACTTTGATCAACAGCCGC
TTTCCAATTCCATCAGCAACAGATCCTGACACAGGCTTCAATGGTGTACAGCATTATGAA
TTGTTAAATGGGCAGAGTGTTTTTGGACTGGATATCGTGGAAACTCCAGAGGGAGAGAAG
TGGCCACAACTGATTGTTCAGCAAAACTTGGATAGAGAACAGAAAGATACCTATGTGATG
AAAATCAAAGTAGAGGATGGAGGCACTCCACAGAAATCCAGTACGGCCATACTGCAGGTC
ACAGTAAGTGATGTAAATGACAACAGGCCAGTGTTTAAAGAGGGTCAAGTGGAGGTGCAT
ATTCCAGAGAATGCTCCCGTAGGTACCTCTGTAATTCAGCTCCATGCCACTGATGCAGAT
ATAGGCAGTAATGCTGAAATCCGGTACATTTTTGGTGCCCAGGTCGCCCCTGCAACCAAA
AGACTCTTTGCTTTAAATAATACTACTGGGCTGATTACAGTTCAGAGGTCCTTAGATAGA
GAGGAGACAGCCATTCACAAAGTGACAGTGCTGGCTAGTGACGGCAGCTCCACTCCTGCT
CGAGCAACGGTTACCATCAATGTCACCGATGTAAATGATAACCCTCCTAATATAGACCTC
AGGTACATTATAAGTCCCATCAATGGCACCGTGTATTTATCTGAGAAAGATCCTGTCAAT
ACAAAGATTGCCCTAATTACAGTTTCAGATAAGGACACAGATGTGAATGGCAAAGTGATC
TGTTTTATTGAAAGAGAGGTCCCATTTCATTTGAAGGCGGTATATGACAACCAATATTTG
TTAGAGACCTCTTCTTTGTTGGACTATGAGGGCACCAAAGAATTCAGCTTTAAAATTGTT
GCCTCTGATTCTGGGAAGCCCAGTTTAAATCAGACTGCCCTGGTAAGGGTTAAGCTTGAG
GATGAAAATGACAACCCACCAATTTTCAACCAGCCTGTAATTGAGCTGTCAGTTTCTGAA
AACAACCGACGTGGGTTATACTTAACAACTATTAGTGCCACAGATGAAGACAGTGGGAAA
AATGCAGACATTGTTTATCAGCTTGGACCGAATGCCTCCTTCTTTGATCTGGACCGAAAA
ACAGGAGTTTTGACAGCCTCCAGAGTATTTGACAGAGAAGAACAAGAACGATTCATTTTT
ACAGTAACTGCCAGGGACAATGGGACCCCTCCCCTCCAAAGCCAAGCGGCTGTGATTGTT
ACTGTTCTGGATGAGAATGACAATAGCCCCAAGTTTACTCATAATCATTTTCAATTTTTT
GTGTCTGAGAATCTGCCAAAGTATAGTACTGTGGGGGTAATCACAGTGACAGATGCAGAT
GCTGGAGAGAATAAAGCTGTGACTCTTTCCATTCTAAATGACAATGATAATTTTGTGTTG
GATCCCTATTCTGGAGTCATAAAGTCAAATGTCTCATTTGATAGAGAGCAGCAGAGTTCC
TACACTTTTGATGTCAAAGCCACTGATGGAGGACAACCACCTCGTTCCTCTACTGCAAAA
GTAACTATCAACGTCATGGATGTCAATGACAACAGCCCAGTTGTCATTTCTCCACCGTCT
AATACTTCCTTTAAGTTGGTGCCCCTCTCAGCCATTCCTGGCTCCGTGGTAGCAGAAGTT
TTTGCAGTGGATGTTGACACTGGAATGAACGCTGAACTAAAGTATACTATAGTGAGTGGA
AACAATAAAGGCTTATTCCGGATTGATCCAGTAACAGGTAACATTACTCTGGAAGAAAAA
CCAGCACCTACTGATGTGGGATTGCATCGTTTGGTGGTCAACATAAGTGACCTGGGGTAC
CCTAAGTCTTTGCACACGCTTGTGCTTGTATTCCTTTATGTTAACGACACTGCTGGAAAT
GCCTCCTATATCTATGACTTGATCCGCAGGACTATGGAGACCCCGTTGGACAGGAACATA
GGGGATAGTAGCCAACCCTATCAAAATGAGGACTATCTAACCATCATGATTGCCATCATC
GCCGGTGCCATGGTGGTCATTGTTGTGATCTTCGTCACCGTTCTGGTGCGCTGTCGCCAT
GCATCAAGGTTCAAAGCAGCTCAGAGGAGCAAGCAAGGTGCCGAATGGATGTCCCCAAAC
CAGGAGAACAAGCAAAACAAGAAAAAGAAAAGAAAGAAAAGGAAGTCTCCCAAAAGCTCT
CTTTTGAACTTTGTTACTATCGAAGAGTCCAAACCCGATGATGCAGTTCATGAACCTATC
AATGGGACAATAAGCCTGCCGGCTGAACTGGAGGAGCAAAGTATAGGAAGATTTGACTGG
GGCCCGGCACCTCCAACAACATTCAAGCCTAACAGTCCTGACCTGGCCAAGCACTACAAA
TCTGCTTCTCCACAGCCTGCTTTTCATCTCAAACCAGACACTCCAGTTTCCGTGAAAAAG
CACCACGTGATTCAGGAACTCCCTTTGGACAACACCTTTGTTGGGGGTTGTGACACCCTT
TCTAAACGCTCTTCCACTAGTTCAGATCACTTCAGTGCCTCAGAGTGCAGTTCCCAAGGA
GGCTTCAAGACAAAGGGCCCCTTACACACCAGACAGTGTAACTCACACAGCAAAAGTGAC
AATATTCCTGTCACTCCTCAGAAATGTCCCAGCTCCACGGGTTTCCACATTCAGGAGAAT
GAAGAAAGCCATTACGAGTCGCAGCGCCGTGTTACGTTTCATCTCCCTGATGGCTCCCAG
GAAAGCTGCAGTGACAGTGGTCTAGGAGACCATGAGCCGGTGGGTAGTGGAACCCTGATC
TCACACCCTCTTCCTCTGGTTCAGCCACAGGACGAATTCTATGACCAGGCCTCTCCGGAC
AAGAGGACTGAAGCAGATGGCAACTCTGATCCCAACTCTGATGGGCCTTTGGGTCCCCGA
GGATTAGCTGAAGCTACAGAGATGTGCACTCAAGAGTGCTTGGTTTTGGGTCACTCTGAT
AATTGCTGGATGCCTCCTGGCTTGGGTCCATATCAACACCCCAAATCTCCTCTCTCAACC
TTTGCACCCCAGAAAGAATGGGTGAAGAAGGACAAGCTTGTGAATGGGCACACCCTGACC
AGAGCCTGGAAAGAAGACAGCAACAGGAACCAGTTCAATGACCGTAAGCAGTATGGCTCC
AATGAAGGCCATTTCAACAATGGCAGCCACATGACAGACATTCCTCTGGCAAATCTGAAG
TCTTATAAGCAAGCAGGAGGTGCTACTGAGAGTCCTAAGGAGCACCAACTCTAA
Protein Properties
Number of Residues 1237
Molecular Weight 136063.3
Theoretical pI 5.12
Pfam Domain Function
Signals
  • 1-23
Transmembrane Regions
  • 815-835
Protein Sequence
>Protocadherin-9
MDLRDFYLLAALIACLRLDSAIAQELIYTIREELPENVPIGNIPKDLNISHINAATGTSA
SLVYRLVSKAGDAPLVKVSSSTGEIFTTSNRIDREKLCAGASYAEENECFFELEVVILPN
DFFRLIKIKIIVKDTNDNAPMFPSPVINISIPENTLINSRFPIPSATDPDTGFNGVQHYE
LLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQKDTYVMKIKVEDGGTPQKSSTAILQV
TVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDADIGSNAEIRYIFGAQVAPATK
RLFALNNTTGLITVQRSLDREETAIHKVTVLASDGSSTPARATVTINVTDVNDNPPNIDL
RYIISPINGTVYLSEKDPVNTKIALITVSDKDTDVNGKVICFIEREVPFHLKAVYDNQYL
LETSSLLDYEGTKEFSFKIVASDSGKPSLNQTALVRVKLEDENDNPPIFNQPVIELSVSE
NNRRGLYLTTISATDEDSGKNADIVYQLGPNASFFDLDRKTGVLTASRVFDREEQERFIF
TVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVGVITVTDAD
AGENKAVTLSILNDNDNFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPRSSTAK
VTINVMDVNDNSPVVISPPSNTSFKLVPLSAIPGSVVAEVFAVDVDTGMNAELKYTIVSG
NNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKSLHTLVLVFLYVNDTAGN
ASYIYDLIRRTMETPLDRNIGDSSQPYQNEDYLTIMIAIIAGAMVVIVVIFVTVLVRCRH
ASRFKAAQRSKQGAEWMSPNQENKQNKKKKRKKRKSPKSSLLNFVTIEESKPDDAVHEPI
NGTISLPAELEEQSIGRFDWGPAPPTTFKPNSPDLAKHYKSASPQPAFHLKPDTPVSVKK
HHVIQELPLDNTFVGGCDTLSKRSSTSSDHFSASECSSQGGFKTKGPLHTRQCNSHSKSD
NIPVTPQKCPSSTGFHIQENEESHYESQRRVTFHLPDGSQESCSDSGLGDHEPVGSGTLI
SHPLPLVQPQDEFYDQASPDKRTEADGNSDPNSDGPLGPRGLAEATEMCTQECLVLGHSD
NCWMPPGLGPYQHPKSPLSTFAPQKEWVKKDKLVNGHTLTRAWKEDSNRNQFNDRKQYGS
NEGHFNNGSHMTDIPLANLKSYKQAGGATESPKEHQL
GenBank ID Protein 45243534
UniProtKB/Swiss-Prot ID Q9HC56
UniProtKB/Swiss-Prot Entry Name PCDH9_HUMAN
PDB IDs Not Available
GenBank Gene ID NM_203487.2
GeneCard ID PCDH9
GenAtlas ID PCDH9
HGNC ID HGNC:8661
References
General References
  1. Gerhard DS, Wagner L, Feingold EA, Shenmen CM, Grouse LH, Schuler G, Klein SL, Old S, Rasooly R, Good P, Guyer M, Peck AM, Derge JG, Lipman D, Collins FS, Jang W, Sherry S, Feolo M, Misquitta L, Lee E, Rotmistrovsky K, Greenhut SF, Schaefer CF, Buetow K, Bonner TI, Haussler D, Kent J, Kiekhaus M, Furey T, Brent M, Prange C, Schreiber K, Shapiro N, Bhat NK, Hopkins RF, Hsie F, Driscoll T, Soares MB, Casavant TL, Scheetz TE, Brown-stein MJ, Usdin TB, Toshiyuki S, Carninci P, Piao Y, Dudekula DB, Ko MS, Kawakami K, Suzuki Y, Sugano S, Gruber CE, Smith MR, Simmons B, Moore T, Waterman R, Johnson SL, Ruan Y, Wei CL, Mathavan S, Gunaratne PH, Wu J, Garcia AM, Hulyk SW, Fuh E, Yuan Y, Sneed A, Kowis C, Hodgson A, Muzny DM, McPherson J, Gibbs RA, Fahey J, Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M, Madari A, Young AC, Wetherby KD, Granite SJ, Kwong PN, Brinkley CP, Pearson RL, Bouffard GG, Blakesly RW, Green ED, Dickson MC, Rodriguez AC, Grimwood J, Schmutz J, Myers RM, Butterfield YS, Griffith M, Griffith OL, Krzywinski MI, Liao N, Morin R, Palmquist D, Petrescu AS, Skalska U, Smailus DE, Stott JM, Schnerch A, Schein JE, Jones SJ, Holt RA, Baross A, Marra MA, Clifton S, Makowski KA, Bosak S, Malek J: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Genome Res. 2004 Oct;14(10B):2121-7. [PubMed:15489334 ]
  2. Bechtel S, Rosenfelder H, Duda A, Schmidt CP, Ernst U, Wellenreuther R, Mehrle A, Schuster C, Bahr A, Blocker H, Heubner D, Hoerlein A, Michel G, Wedler H, Kohrer K, Ottenwalder B, Poustka A, Wiemann S, Schupp I: The full-ORF clone resource of the German cDNA Consortium. BMC Genomics. 2007 Oct 31;8:399. [PubMed:17974005 ]
  3. Dunham A, Matthews LH, Burton J, Ashurst JL, Howe KL, Ashcroft KJ, Beare DM, Burford DC, Hunt SE, Griffiths-Jones S, Jones MC, Keenan SJ, Oliver K, Scott CE, Ainscough R, Almeida JP, Ambrose KD, Andrews DT, Ashwell RI, Babbage AK, Bagguley CL, Bailey J, Bannerjee R, Barlow KF, Bates K, Beasley H, Bird CP, Bray-Allen S, Brown AJ, Brown JY, Burrill W, Carder C, Carter NP, Chapman JC, Clamp ME, Clark SY, Clarke G, Clee CM, Clegg SC, Cobley V, Collins JE, Corby N, Coville GJ, Deloukas P, Dhami P, Dunham I, Dunn M, Earthrowl ME, Ellington AG, Faulkner L, Frankish AG, Frankland J, French L, Garner P, Garnett J, Gilbert JG, Gilson CJ, Ghori J, Grafham DV, Gribble SM, Griffiths C, Hall RE, Hammond S, Harley JL, Hart EA, Heath PD, Howden PJ, Huckle EJ, Hunt PJ, Hunt AR, Johnson C, Johnson D, Kay M, Kimberley AM, King A, Laird GK, Langford CJ, Lawlor S, Leongamornlert DA, Lloyd DM, Lloyd C, Loveland JE, Lovell J, Martin S, Mashreghi-Mohammadi M, McLaren SJ, McMurray A, Milne S, Moore MJ, Nickerson T, Palmer SA, Pearce AV, Peck AI, Pelan S, Phillimore B, Porter KM, Rice CM, Searle S, Sehra HK, Shownkeen R, Skuce CD, Smith M, Steward CA, Sycamore N, Tester J, Thomas DW, Tracey A, Tromans A, Tubby B, Wall M, Wallis JM, West AP, Whitehead SL, Willey DL, Wilming L, Wray PW, Wright MW, Young L, Coulson A, Durbin R, Hubbard T, Sulston JE, Beck S, Bentley DR, Rogers J, Ross MT: The DNA sequence and analysis of human chromosome 13. Nature. 2004 Apr 1;428(6982):522-8. [PubMed:15057823 ]