Hmdb loader
Survey
You are using an unsupported browser. Please upgrade your browser to a newer version to get the best experience on Human Metabolome Database.
Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-06 15:16:49 UTC
Update Date2022-03-07 02:51:40 UTC
HMDB IDHMDB0014604
Secondary Accession Numbers
  • HMDB14604
Metabolite Identification
Common NameNabumetone
DescriptionNabumetone, also known as relafen or relif, belongs to the class of organic compounds known as naphthalenes. Naphthalenes are compounds containing a naphthalene moiety, which consists of two fused benzene rings. Nabumetone is an extremely weak basic (essentially neutral) compound (based on its pKa). In humans, nabumetone is involved in nabumetone action pathway. A methyl ketone that is 2-butanone in which one of the methyl hydrogens at position 4 is replaced by a 6-methoxy-2-naphthyl group. It is shown to have a slightly lower risk of gastrointestinal side effects than most other non-steroidal anti-inflammatory drugs. A prodrug that is converted to the active metabolite, 6-methoxy-2-naphthylacetic acid, following oral administration.
Structure
Data?1582753198
Synonyms
ValueSource
4-(6-Methoxy-2-naphthalenyl)-2-butanoneChEBI
4-(6-Methoxy-2-naphthyl)-2-butanoneChEBI
NabumetonaChEBI
NabumetonumChEBI
RelafenChEBI
ArthraxanHMDB
ListranHMDB
NabumetonHMDB
Apo-nabumetoneHMDB
NabucoxHMDB
RelifHMDB
MebutanHMDB
Rhoxal-nabumetoneHMDB
Gen-nabumetoneHMDB
RelifexHMDB
Rhoxal nabumetoneHMDB
ApoNabumetoneHMDB
Chemical FormulaC15H16O2
Average Molecular Weight228.2863
Monoisotopic Molecular Weight228.115029756
IUPAC Name4-(6-methoxynaphthalen-2-yl)butan-2-one
Traditional Namenabumetone
CAS Registry Number42924-53-8
SMILES
COC1=CC2=C(C=C1)C=C(CCC(C)=O)C=C2
InChI Identifier
InChI=1S/C15H16O2/c1-11(16)3-4-12-5-6-14-10-15(17-2)8-7-13(14)9-12/h5-10H,3-4H2,1-2H3
InChI KeyBLXXJMDCKKHMKV-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as naphthalenes. Naphthalenes are compounds containing a naphthalene moiety, which consists of two fused benzene rings.
KingdomOrganic compounds
Super ClassBenzenoids
ClassNaphthalenes
Sub ClassNot Available
Direct ParentNaphthalenes
Alternative Parents
Substituents
  • Naphthalene
  • Anisole
  • Alkyl aryl ether
  • Ketone
  • Ether
  • Organic oxygen compound
  • Organic oxide
  • Hydrocarbon derivative
  • Organooxygen compound
  • Carbonyl group
  • Aromatic homopolycyclic compound
Molecular FrameworkAromatic homopolycyclic compounds
External Descriptors
Ontology
Physiological effectNot Available
Disposition
Process
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting PointNot AvailableNot Available
Boiling PointNot AvailableNot Available
Water Solubility0.0019 g/LNot Available
LogP3.1Not Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.0019 g/LALOGPS
logP3.41ALOGPS
logP3.22ChemAxon
logS-5.1ALOGPS
pKa (Strongest Acidic)19.59ChemAxon
pKa (Strongest Basic)-4.8ChemAxon
Physiological Charge0ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count0ChemAxon
Polar Surface Area26.3 ŲChemAxon
Rotatable Bond Count4ChemAxon
Refractivity68.43 m³·mol⁻¹ChemAxon
Polarizability26.17 ųChemAxon
Number of Rings2ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleYesChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+154.75931661259
DarkChem[M-H]-154.431661259
DeepCCS[M+H]+159.08230932474
DeepCCS[M-H]-156.72430932474
DeepCCS[M-2H]-189.61730932474
DeepCCS[M+Na]+165.17530932474
AllCCS[M+H]+153.132859911
AllCCS[M+H-H2O]+149.132859911
AllCCS[M+NH4]+156.832859911
AllCCS[M+Na]+157.932859911
AllCCS[M-H]-158.532859911
AllCCS[M+Na-2H]-158.532859911
AllCCS[M+HCOO]-158.732859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
NabumetoneCOC1=CC2=C(C=C1)C=C(CCC(C)=O)C=C23001.9Standard polar33892256
NabumetoneCOC1=CC2=C(C=C1)C=C(CCC(C)=O)C=C21956.4Standard non polar33892256
NabumetoneCOC1=CC2=C(C=C1)C=C(CCC(C)=O)C=C22091.2Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Nabumetone,1TMS,isomer #1COC1=CC=C2C=C(CC=C(C)O[Si](C)(C)C)C=CC2=C12229.0Semi standard non polar33892256
Nabumetone,1TMS,isomer #1COC1=CC=C2C=C(CC=C(C)O[Si](C)(C)C)C=CC2=C12150.5Standard non polar33892256
Nabumetone,1TMS,isomer #1COC1=CC=C2C=C(CC=C(C)O[Si](C)(C)C)C=CC2=C12690.6Standard polar33892256
Nabumetone,1TMS,isomer #2C=C(CCC1=CC=C2C=C(OC)C=CC2=C1)O[Si](C)(C)C2134.4Semi standard non polar33892256
Nabumetone,1TMS,isomer #2C=C(CCC1=CC=C2C=C(OC)C=CC2=C1)O[Si](C)(C)C2133.9Standard non polar33892256
Nabumetone,1TMS,isomer #2C=C(CCC1=CC=C2C=C(OC)C=CC2=C1)O[Si](C)(C)C2694.1Standard polar33892256
Nabumetone,1TBDMS,isomer #1COC1=CC=C2C=C(CC=C(C)O[Si](C)(C)C(C)(C)C)C=CC2=C12487.3Semi standard non polar33892256
Nabumetone,1TBDMS,isomer #1COC1=CC=C2C=C(CC=C(C)O[Si](C)(C)C(C)(C)C)C=CC2=C12386.8Standard non polar33892256
Nabumetone,1TBDMS,isomer #1COC1=CC=C2C=C(CC=C(C)O[Si](C)(C)C(C)(C)C)C=CC2=C12782.2Standard polar33892256
Nabumetone,1TBDMS,isomer #2C=C(CCC1=CC=C2C=C(OC)C=CC2=C1)O[Si](C)(C)C(C)(C)C2407.2Semi standard non polar33892256
Nabumetone,1TBDMS,isomer #2C=C(CCC1=CC=C2C=C(OC)C=CC2=C1)O[Si](C)(C)C(C)(C)C2341.0Standard non polar33892256
Nabumetone,1TBDMS,isomer #2C=C(CCC1=CC=C2C=C(OC)C=CC2=C1)O[Si](C)(C)C(C)(C)C2791.2Standard polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Nabumetone GC-MS (Non-derivatized) - 70eV, Positivesplash10-0006-7930000000-53550e3b73002ac9c6712017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Nabumetone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Nabumetone GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Experimental LC-MS/MSLC-MS/MS Spectrum - Nabumetone LC-ESI-qTof , Positive-QTOFsplash10-00di-0900000000-af6f3d0d1c5f77f472792017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Nabumetone LC-ESI-qTof , Positive-QTOFsplash10-00di-0900000000-6b7de93b51a79132630f2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Nabumetone LC-ESI-qTof , Positive-QTOFsplash10-004i-4910000000-a4f59053ed0ee04bb88f2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Nabumetone , positive-QTOFsplash10-00di-0900000000-6b7de93b51a79132630f2017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Nabumetone , positive-QTOFsplash10-00di-0900000000-af6f3d0d1c5f77f472792017-09-14HMDB team, MONAView Spectrum
Experimental LC-MS/MSLC-MS/MS Spectrum - Nabumetone , positive-QTOFsplash10-00fr-2900000000-53d7d6dc809a154d16c22017-09-14HMDB team, MONAView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 10V, Positive-QTOFsplash10-01t9-0190000000-b864e89d948e8076c3fb2016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 20V, Positive-QTOFsplash10-03fr-1290000000-657a908ca7f06b7711a02016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 40V, Positive-QTOFsplash10-0udi-3900000000-86bd2c983b81aa7bef162016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 10V, Negative-QTOFsplash10-004i-0090000000-4938674275db31bd9e412016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 20V, Negative-QTOFsplash10-004i-0290000000-7bbcedc9462b3b3aed772016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 40V, Negative-QTOFsplash10-03dl-2940000000-3cfbcbe6458c3d4b10002016-08-03Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 10V, Positive-QTOFsplash10-00di-0960000000-dc5e2e6a6aaebbe051612021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 20V, Positive-QTOFsplash10-00di-0930000000-76ec0fb1eac9f0347fa12021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 40V, Positive-QTOFsplash10-05bo-0900000000-cbb1b90e5fe8c723de8c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 10V, Negative-QTOFsplash10-004i-0090000000-202799ccfbea13f5ad792021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 20V, Negative-QTOFsplash10-0a6r-5960000000-d4422601462c920c62ac2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Nabumetone 40V, Negative-QTOFsplash10-014i-0900000000-63bc8342ce285796ade92021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Cytoplasm
  • Membrane
Biospecimen Locations
  • Blood
  • Urine
Tissue LocationsNot Available
Pathways
Normal Concentrations
BiospecimenStatusValueAgeSexConditionReferenceDetails
BloodExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableTaking drug identified by DrugBank entry DB00461 details
UrineExpected but not QuantifiedNot QuantifiedNot AvailableNot AvailableTaking drug identified by DrugBank entry DB00461 details
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDDB00461
Phenol Explorer Compound IDNot Available
FooDB IDNot Available
KNApSAcK IDNot Available
Chemspider ID4256
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkNabumetone
METLIN IDNot Available
PubChem Compound4409
PDB IDNBO
ChEBI ID7443
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General ReferencesNot Available

Enzymes

General function:
Involved in peroxidase activity
Specific function:
Part of the host defense system of polymorphonuclear leukocytes. It is responsible for microbicidal activity against a wide range of organisms. In the stimulated PMN, MPO catalyzes the production of hypohalous acids, primarily hypochlorous acid in physiologic situations, and other toxic intermediates that greatly enhance PMN microbicidal activity.
Gene Name:
MPO
Uniprot ID:
P05164
Molecular weight:
83867.71
References
  1. Saleh TS, Calixto JB, Medeiros YS: Effects of anti-inflammatory drugs upon nitrate and myeloperoxidase levels in the mouse pleurisy induced by carrageenan. Peptides. 1999;20(8):949-56. [PubMed:10503773 ]
General function:
Involved in peroxidase activity
Specific function:
Mediates the formation of prostaglandins from arachidonate. May have a role as a major mediator of inflammation and/or a role for prostanoid signaling in activity-dependent plasticity.
Gene Name:
PTGS2
Uniprot ID:
P35354
Molecular weight:
68995.625
References
  1. Fackovcova D, Kristova V, Kriska M: Renal damage induced by the treatment with non-opioid analgesics--theoretical assumption or clinical significance. Bratisl Lek Listy. 2000;101(8):417-22. [PubMed:11153163 ]
  2. Roy HK, Karolski WJ, Ratashak A: Distal bowel selectivity in the chemoprevention of experimental colon carcinogenesis by the non-steroidal anti-inflammatory drug nabumetone. Int J Cancer. 2001 May 15;92(4):609-15. [PubMed:11304699 ]
  3. van Kraaij DJ, Hovestad-Witterland AH, de Metz M, Vollaard EJ: A comparison of the effects of nabumetone vs meloxicam on serum thromboxane B2 and platelet function in healthy volunteers. Br J Clin Pharmacol. 2002 Jun;53(6):644-7. [PubMed:12047490 ]
  4. Hedner T, Samulesson O, Wahrborg P, Wadenvik H, Ung KA, Ekbom A: Nabumetone: therapeutic use and safety profile in the management of osteoarthritis and rheumatoid arthritis. Drugs. 2004;64(20):2315-43; discussion 2344-5. [PubMed:15456329 ]
  5. Elliott SN, McKnight W, Cirino G, Wallace JL: A nitric oxide-releasing nonsteroidal anti-inflammatory drug accelerates gastric ulcer healing in rats. Gastroenterology. 1995 Aug;109(2):524-30. [PubMed:7615202 ]
  6. Chen X, Ji ZL, Chen YZ: TTD: Therapeutic Target Database. Nucleic Acids Res. 2002 Jan 1;30(1):412-5. [PubMed:11752352 ]
General function:
Involved in peroxidase activity
Specific function:
May play an important role in regulating or promoting cell proliferation in some normal and neoplastically transformed cells.
Gene Name:
PTGS1
Uniprot ID:
P23219
Molecular weight:
68685.82
References
  1. Giuliano F, Ferraz JG, Pereira R, de Nucci G, Warner TD: Cyclooxygenase selectivity of non-steroid anti-inflammatory drugs in humans: ex vivo evaluation. Eur J Pharmacol. 2001 Aug 24;426(1-2):95-103. [PubMed:11525777 ]
  2. Takeuchi K, Smale S, Premchand P, Maiden L, Sherwood R, Thjodleifsson B, Bjornsson E, Bjarnason I: Prevalence and mechanism of nonsteroidal anti-inflammatory drug-induced clinical relapse in patients with inflammatory bowel disease. Clin Gastroenterol Hepatol. 2006 Feb;4(2):196-202. [PubMed:16469680 ]
  3. Cipollone F, Ganci A, Panara MR, Greco A, Cuccurullo F, Patrono C, Patrignani P: Effects of nabumetone on prostanoid biosynthesis in humans. Clin Pharmacol Ther. 1995 Sep;58(3):335-41. [PubMed:7554708 ]
  4. Bensen W, Zizzo A: Newer, safer nonsteroidal anti-inflammatory drugs. Rational NSAID selection for arthritis. Can Fam Physician. 1998 Jan;44:101-2, 105-7. [PubMed:9481468 ]
General function:
Involved in monooxygenase activity
Specific function:
Cytochromes P450 are a group of heme-thiolate monooxygenases. In liver microsomes, this enzyme is involved in an NADPH-dependent electron transport pathway. It oxidizes a variety of structurally unrelated compounds, including steroids, fatty acids, and xenobiotics. Most active in catalyzing 2-hydroxylation. Caffeine is metabolized primarily by cytochrome CYP1A2 in the liver through an initial N3-demethylation. Also acts in the metabolism of aflatoxin B1 and acetaminophen. Participates in the bioactivation of carcinogenic aromatic and heterocyclic amines. Catalizes the N-hydroxylation of heterocyclic amines and the O-deethylation of phenacetin.
Gene Name:
CYP1A2
Uniprot ID:
P05177
Molecular weight:
58406.915
References
  1. Turpeinen M, Hofmann U, Klein K, Murdter T, Schwab M, Zanger UM: A predominate role of CYP1A2 for the metabolism of nabumetone to the active metabolite, 6-methoxy-2-naphthylacetic acid, in human liver microsomes. Drug Metab Dispos. 2009 May;37(5):1017-24. doi: 10.1124/dmd.108.025700. Epub 2009 Feb 9. [PubMed:19204080 ]