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Record Information
Version5.0
StatusExpected but not Quantified
Creation Date2012-09-11 17:35:25 UTC
Update Date2022-03-07 02:52:28 UTC
HMDB IDHMDB0030202
Secondary Accession Numbers
  • HMDB30202
Metabolite Identification
Common NameFumigaclavine A
DescriptionFumigaclavine A belongs to the class of organic compounds known as clavines and derivatives. These are hydroxy and dehydro derivatives of 6,8-dimethylergolenes and the corresponding ergolines. Fumigaclavine A is an antibacterial ergoline alkaloid produced by endophytic Aspergillus. Fumigaclavine A is a very strong basic compound (based on its pKa).
Structure
Data?1563861952
Synonyms
ValueSource
Isofumigaclavine aHMDB
4,6-Dimethyl-6,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(16),9,12,14-tetraen-3-yl acetic acidGenerator
Isofumigaclavine a, (8alpha,9beta)-isomerMeSH
9-Acetoxy-6,8-dimethylergolineMeSH
Chemical FormulaC18H22N2O2
Average Molecular Weight298.3795
Monoisotopic Molecular Weight298.168127958
IUPAC Name4,6-dimethyl-6,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(16),9,12,14-tetraen-3-yl acetate
Traditional Name4,6-dimethyl-6,11-diazatetracyclo[7.6.1.0²,⁷.0¹²,¹⁶]hexadeca-1(16),9,12,14-tetraen-3-yl acetate
CAS Registry Number6879-59-0
SMILES
CC1CN(C)C2CC3=CNC4=CC=CC(C2C1OC(C)=O)=C34
InChI Identifier
InChI=1S/C18H22N2O2/c1-10-9-20(3)15-7-12-8-19-14-6-4-5-13(16(12)14)17(15)18(10)22-11(2)21/h4-6,8,10,15,17-19H,7,9H2,1-3H3
InChI KeyGJSSYQDXZLZOLR-UHFFFAOYSA-N
Chemical Taxonomy
Description Belongs to the class of organic compounds known as clavines and derivatives. These are hydroxy and dehydro derivatives of 6,8-dimethylergolenes and the corresponding ergolines.
KingdomOrganic compounds
Super ClassAlkaloids and derivatives
ClassErgoline and derivatives
Sub ClassClavines and derivatives
Direct ParentClavines and derivatives
Alternative Parents
Substituents
  • Clavine skeleton
  • Indoloquinoline
  • Benzoquinoline
  • Pyrroloquinoline
  • Quinoline
  • 3-alkylindole
  • Indole
  • Indole or derivatives
  • Isoindole or derivatives
  • Aralkylamine
  • Benzenoid
  • Piperidine
  • Heteroaromatic compound
  • Pyrrole
  • Amino acid or derivatives
  • Tertiary aliphatic amine
  • Tertiary amine
  • Carboxylic acid ester
  • Azacycle
  • Carboxylic acid derivative
  • Monocarboxylic acid or derivatives
  • Organoheterocyclic compound
  • Organooxygen compound
  • Organic oxide
  • Organopnictogen compound
  • Organic oxygen compound
  • Hydrocarbon derivative
  • Organonitrogen compound
  • Carbonyl group
  • Organic nitrogen compound
  • Amine
  • Aromatic heteropolycyclic compound
Molecular FrameworkAromatic heteropolycyclic compounds
External DescriptorsNot Available
Ontology
Physiological effectNot Available
Disposition
ProcessNot Available
RoleNot Available
Physical Properties
StateSolid
Experimental Molecular Properties
PropertyValueReference
Melting Point84 - 85 °CNot Available
Boiling PointNot AvailableNot Available
Water SolubilityNot AvailableNot Available
LogPNot AvailableNot Available
Experimental Chromatographic PropertiesNot Available
Predicted Molecular Properties
PropertyValueSource
Water Solubility0.17 g/LALOGPS
logP3ALOGPS
logP2.24ChemAxon
logS-3.2ALOGPS
pKa (Strongest Acidic)17.05ChemAxon
pKa (Strongest Basic)8.5ChemAxon
Physiological Charge1ChemAxon
Hydrogen Acceptor Count2ChemAxon
Hydrogen Donor Count1ChemAxon
Polar Surface Area45.33 ŲChemAxon
Rotatable Bond Count2ChemAxon
Refractivity85.86 m³·mol⁻¹ChemAxon
Polarizability32.78 ųChemAxon
Number of Rings4ChemAxon
BioavailabilityYesChemAxon
Rule of FiveYesChemAxon
Ghose FilterYesChemAxon
Veber's RuleNoChemAxon
MDDR-like RuleNoChemAxon
Predicted Chromatographic Properties

Predicted Collision Cross Sections

PredictorAdduct TypeCCS Value (Å2)Reference
DarkChem[M+H]+171.04731661259
DarkChem[M-H]-171.43131661259
DeepCCS[M-2H]-200.53530932474
DeepCCS[M+Na]+175.83830932474
AllCCS[M+H]+171.332859911
AllCCS[M+H-H2O]+167.932859911
AllCCS[M+NH4]+174.432859911
AllCCS[M+Na]+175.332859911
AllCCS[M-H]-178.432859911
AllCCS[M+Na-2H]-178.132859911
AllCCS[M+HCOO]-178.032859911

Predicted Kovats Retention Indices

Underivatized

MetaboliteSMILESKovats RI ValueColumn TypeReference
Fumigaclavine ACC1CN(C)C2CC3=CNC4=CC=CC(C2C1OC(C)=O)=C343621.5Standard polar33892256
Fumigaclavine ACC1CN(C)C2CC3=CNC4=CC=CC(C2C1OC(C)=O)=C342514.3Standard non polar33892256
Fumigaclavine ACC1CN(C)C2CC3=CNC4=CC=CC(C2C1OC(C)=O)=C342681.7Semi standard non polar33892256

Derivatized

Derivative Name / StructureSMILESKovats RI ValueColumn TypeReference
Fumigaclavine A,1TMS,isomer #1CC(=O)OC1C(C)CN(C)C2CC3=CN([Si](C)(C)C)C4=CC=CC(=C34)C122529.6Semi standard non polar33892256
Fumigaclavine A,1TMS,isomer #1CC(=O)OC1C(C)CN(C)C2CC3=CN([Si](C)(C)C)C4=CC=CC(=C34)C122520.6Standard non polar33892256
Fumigaclavine A,1TBDMS,isomer #1CC(=O)OC1C(C)CN(C)C2CC3=CN([Si](C)(C)C(C)(C)C)C4=CC=CC(=C34)C122741.3Semi standard non polar33892256
Fumigaclavine A,1TBDMS,isomer #1CC(=O)OC1C(C)CN(C)C2CC3=CN([Si](C)(C)C(C)(C)C)C4=CC=CC(=C34)C122742.3Standard non polar33892256
Spectra

GC-MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted GC-MSPredicted GC-MS Spectrum - Fumigaclavine A GC-MS (Non-derivatized) - 70eV, Positivesplash10-0002-2910000000-346f654859d73bbc8f912017-09-01Wishart LabView Spectrum
Predicted GC-MSPredicted GC-MS Spectrum - Fumigaclavine A GC-MS (Non-derivatized) - 70eV, PositiveNot Available2021-10-12Wishart LabView Spectrum

MS/MS Spectra

Spectrum TypeDescriptionSplash KeyDeposition DateSourceView
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 10V, Positive-QTOFsplash10-0002-0090000000-b715403218c40e6760432015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 20V, Positive-QTOFsplash10-052r-0290000000-24c9fb2ef862ffc270932015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 40V, Positive-QTOFsplash10-0udj-1910000000-3dc6ab6c6f35de2107952015-04-24Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 10V, Negative-QTOFsplash10-052b-1090000000-53f5b8043f56a590e0462015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 20V, Negative-QTOFsplash10-0a4i-3090000000-a25338e53c4a3846217e2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 40V, Negative-QTOFsplash10-0pbl-9450000000-f4d9132368c12c68e42e2015-04-25Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 10V, Negative-QTOFsplash10-0a4i-1090000000-b5f0630f6481fb38021c2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 20V, Negative-QTOFsplash10-0a4j-5090000000-d8c0ad054a355a6fd1e52021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 40V, Negative-QTOFsplash10-056r-2590000000-73c94c935ea3f9a7260e2021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 10V, Positive-QTOFsplash10-000i-0090000000-e68cbcd9fc6ab3f369052021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 20V, Positive-QTOFsplash10-000j-0090000000-9aa67a1aee54fe1adca02021-09-22Wishart LabView Spectrum
Predicted LC-MS/MSPredicted LC-MS/MS Spectrum - Fumigaclavine A 40V, Positive-QTOFsplash10-0fki-1930000000-6d5d1720775ae299602c2021-09-22Wishart LabView Spectrum
Biological Properties
Cellular Locations
  • Membrane
Biospecimen LocationsNot Available
Tissue LocationsNot Available
Pathways
Normal Concentrations
Not Available
Abnormal Concentrations
Not Available
Associated Disorders and Diseases
Disease ReferencesNone
Associated OMIM IDsNone
DrugBank IDNot Available
Phenol Explorer Compound IDNot Available
FooDB IDFDB002020
KNApSAcK IDC00011246
Chemspider ID28581575
KEGG Compound IDNot Available
BioCyc IDNot Available
BiGG IDNot Available
Wikipedia LinkFumigaclavine A
METLIN IDNot Available
PubChem Compound12309935
PDB IDNot Available
ChEBI IDNot Available
Food Biomarker OntologyNot Available
VMH IDNot Available
MarkerDB IDNot Available
Good Scents IDNot Available
References
Synthesis ReferenceNot Available
Material Safety Data Sheet (MSDS)Not Available
General References
  1. (). Yannai, Shmuel. (2004) Dictionary of food compounds with CD-ROM: Additives, flavors, and ingredients. Boca Raton: Chapman & Hall/CRC.. .